BLASTX nr result

ID: Coptis21_contig00016114 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00016114
         (1108 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI39732.3| unnamed protein product [Vitis vinifera]              289   1e-75
ref|XP_002265434.1| PREDICTED: probable helicase DDB_G0274399-li...   289   1e-75
ref|XP_002323788.1| predicted protein [Populus trichocarpa] gi|2...   244   3e-62
ref|XP_002519473.1| conserved hypothetical protein [Ricinus comm...   239   7e-61
ref|NP_001146818.1| uncharacterized protein LOC100280423 [Zea ma...   226   6e-57

>emb|CBI39732.3| unnamed protein product [Vitis vinifera]
          Length = 332

 Score =  289 bits (739), Expect = 1e-75
 Identities = 143/191 (74%), Positives = 170/191 (89%)
 Frame = -3

Query: 1106 WVNVDEVEFIFLMYNKLVTNYPELKSSSRLAIISPYRHQVKLFRDRFRNTFGVESDKLVD 927
            WVNVDEVEF+ LMY+KLVT YPELKSSSRLAIISPYRHQVKLFR+RF++TFGVESDK+VD
Sbjct: 121  WVNVDEVEFVLLMYHKLVTRYPELKSSSRLAIISPYRHQVKLFRERFQDTFGVESDKVVD 180

Query: 926  INTVDGFQGREKDVAIFSCVRASKDKGIGFVADFRRMNVGITRARSSVLVVGSASTLKRD 747
            INTVDGFQGREKDVAIFSCVRASKDKGIGFVADFRRMNVGITRAR+SVLVVGSASTLK+D
Sbjct: 181  INTVDGFQGREKDVAIFSCVRASKDKGIGFVADFRRMNVGITRARASVLVVGSASTLKKD 240

Query: 746  KHWANLVQSAEQRSCLFKVSRPYASFFNDKNLKTLQVKDETMIDAVESHPGETEDTAAMY 567
            +HW NL++SAE+R+CL KVS+PY +FF+D+NLK++  KD++M +  E      ++ A +Y
Sbjct: 241  EHWNNLLESAEKRNCLLKVSKPYTAFFSDENLKSMVAKDQSMPEDAEGGMA-VDNNAPIY 299

Query: 566  GNPVGEPEQGQ 534
             N +G+ EQGQ
Sbjct: 300  SN-LGDAEQGQ 309


>ref|XP_002265434.1| PREDICTED: probable helicase DDB_G0274399-like [Vitis vinifera]
          Length = 831

 Score =  289 bits (739), Expect = 1e-75
 Identities = 143/191 (74%), Positives = 170/191 (89%)
 Frame = -3

Query: 1106 WVNVDEVEFIFLMYNKLVTNYPELKSSSRLAIISPYRHQVKLFRDRFRNTFGVESDKLVD 927
            WVNVDEVEF+ LMY+KLVT YPELKSSSRLAIISPYRHQVKLFR+RF++TFGVESDK+VD
Sbjct: 620  WVNVDEVEFVLLMYHKLVTRYPELKSSSRLAIISPYRHQVKLFRERFQDTFGVESDKVVD 679

Query: 926  INTVDGFQGREKDVAIFSCVRASKDKGIGFVADFRRMNVGITRARSSVLVVGSASTLKRD 747
            INTVDGFQGREKDVAIFSCVRASKDKGIGFVADFRRMNVGITRAR+SVLVVGSASTLK+D
Sbjct: 680  INTVDGFQGREKDVAIFSCVRASKDKGIGFVADFRRMNVGITRARASVLVVGSASTLKKD 739

Query: 746  KHWANLVQSAEQRSCLFKVSRPYASFFNDKNLKTLQVKDETMIDAVESHPGETEDTAAMY 567
            +HW NL++SAE+R+CL KVS+PY +FF+D+NLK++  KD++M +  E      ++ A +Y
Sbjct: 740  EHWNNLLESAEKRNCLLKVSKPYTAFFSDENLKSMVAKDQSMPEDAEGGMA-VDNNAPIY 798

Query: 566  GNPVGEPEQGQ 534
             N +G+ EQGQ
Sbjct: 799  SN-LGDAEQGQ 808


>ref|XP_002323788.1| predicted protein [Populus trichocarpa] gi|222866790|gb|EEF03921.1|
            predicted protein [Populus trichocarpa]
          Length = 565

 Score =  244 bits (623), Expect = 3e-62
 Identities = 117/158 (74%), Positives = 142/158 (89%)
 Frame = -3

Query: 1106 WVNVDEVEFIFLMYNKLVTNYPELKSSSRLAIISPYRHQVKLFRDRFRNTFGVESDKLVD 927
            WVNVDEVEF+ L+Y+KLVT YPEL+SSS+ AIISPYRHQVKLF+DRFR+ FG ES K VD
Sbjct: 360  WVNVDEVEFVLLLYHKLVTMYPELRSSSQFAIISPYRHQVKLFQDRFRDAFGQESKKFVD 419

Query: 926  INTVDGFQGREKDVAIFSCVRASKDKGIGFVADFRRMNVGITRARSSVLVVGSASTLKRD 747
            I TVDGFQGREKDVAIFSCVR++ D+ IGFV+D RRMNVGITRA+S+VLVVGSASTL+ D
Sbjct: 420  IQTVDGFQGREKDVAIFSCVRSNDDRRIGFVSDARRMNVGITRAKSAVLVVGSASTLRND 479

Query: 746  KHWANLVQSAEQRSCLFKVSRPYASFFNDKNLKTLQVK 633
            +HW NLV+SAE+R+ LFKVS+PY+SFF+D NL +++V+
Sbjct: 480  EHWNNLVESAEKRNVLFKVSKPYSSFFSDSNLNSMKVE 517


>ref|XP_002519473.1| conserved hypothetical protein [Ricinus communis]
            gi|223541336|gb|EEF42887.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 826

 Score =  239 bits (611), Expect = 7e-61
 Identities = 122/191 (63%), Positives = 152/191 (79%)
 Frame = -3

Query: 1106 WVNVDEVEFIFLMYNKLVTNYPELKSSSRLAIISPYRHQVKLFRDRFRNTFGVESDKLVD 927
            WVN DEV+F+  MY+KLVT +P+L+SSS+ AIISPYR+QVKL +DRFR+ FG ES++ VD
Sbjct: 620  WVNNDEVDFVLHMYHKLVTMHPKLRSSSQFAIISPYRNQVKLLQDRFRDMFGQESEQFVD 679

Query: 926  INTVDGFQGREKDVAIFSCVRASKDKGIGFVADFRRMNVGITRARSSVLVVGSASTLKRD 747
            I TVDGFQGREKDVAIFSCVRA+KD+GIGFV+D RRMNVGITRA+S+VLVVGSASTLK D
Sbjct: 680  IQTVDGFQGREKDVAIFSCVRANKDRGIGFVSDSRRMNVGITRAKSTVLVVGSASTLKSD 739

Query: 746  KHWANLVQSAEQRSCLFKVSRPYASFFNDKNLKTLQVKDETMIDAVESHPGETEDTAAMY 567
            + W  LV+SAEQR  LFKV +PY SFF+D NL++++  +   +        E + T AM 
Sbjct: 740  ESWKRLVESAEQRGVLFKVDKPYDSFFSDSNLESMKTTEN--LPGRNDEDQENDMTVAMQ 797

Query: 566  GNPVGEPEQGQ 534
            GN VG+ +QGQ
Sbjct: 798  GN-VGDADQGQ 807


>ref|NP_001146818.1| uncharacterized protein LOC100280423 [Zea mays]
            gi|219888873|gb|ACL54811.1| unknown [Zea mays]
          Length = 399

 Score =  226 bits (577), Expect = 6e-57
 Identities = 105/158 (66%), Positives = 136/158 (86%)
 Frame = -3

Query: 1106 WVNVDEVEFIFLMYNKLVTNYPELKSSSRLAIISPYRHQVKLFRDRFRNTFGVESDKLVD 927
            WVN DEVEFI L+Y++L   YPELKSS  + +ISPYRHQVKL +D FR+TFG +S +L+D
Sbjct: 189  WVNQDEVEFITLLYHQLALRYPELKSSPEVGVISPYRHQVKLLKDSFRSTFGDQSRELID 248

Query: 926  INTVDGFQGREKDVAIFSCVRASKDKGIGFVADFRRMNVGITRARSSVLVVGSASTLKRD 747
            ++TVDGFQGREK++ IFSCVR +K++ IGFV+DFRRMNV ITRA+S+VLVVGSASTLK+D
Sbjct: 249  VSTVDGFQGREKEIVIFSCVRCNKEQKIGFVSDFRRMNVAITRAKSAVLVVGSASTLKQD 308

Query: 746  KHWANLVQSAEQRSCLFKVSRPYASFFNDKNLKTLQVK 633
            KHW NLV+SA++R+CLFKV +P  +FF + NLKT++V+
Sbjct: 309  KHWNNLVESAKERNCLFKVPKPLTAFFAEDNLKTMKVE 346


Top