BLASTX nr result
ID: Coptis21_contig00015895
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00015895
(611 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002273351.1| PREDICTED: transcription initiation factor T... 294 7e-78
ref|XP_002273382.1| PREDICTED: transcription initiation factor T... 294 7e-78
emb|CBI15409.3| unnamed protein product [Vitis vinifera] 287 9e-76
ref|XP_003549807.1| PREDICTED: transcription initiation factor T... 275 6e-72
ref|XP_003549806.1| PREDICTED: transcription initiation factor T... 275 6e-72
>ref|XP_002273351.1| PREDICTED: transcription initiation factor TFIID subunit 2-like
isoform 1 [Vitis vinifera]
Length = 1325
Score = 294 bits (753), Expect = 7e-78
Identities = 143/203 (70%), Positives = 165/203 (81%)
Frame = +2
Query: 2 SGEVKQNVKLIRIDYWIEKAETGIHFDRNVLHTDNQIRRAQCWFPCMNNSSQRYXXXXXX 181
SGE KQNVKL+R+DYW+E+AETGIHF+ NVLHTDNQIRRA+CWFPCM+++SQ
Sbjct: 148 SGEPKQNVKLVRVDYWVERAETGIHFEDNVLHTDNQIRRARCWFPCMDDTSQ-------- 199
Query: 182 XXXXXXXXXVAQNFVAVSNGTLLYQVLSKDDPPRKTFVYSLSVPVAARWISLVVAQFEIL 361
VA N VAVS G+LLYQVLSKDDPPRKT+VY L+VPV ARWI L VA FE+L
Sbjct: 200 CCCYDLEFTVAHNLVAVSTGSLLYQVLSKDDPPRKTYVYKLNVPVTARWIQLAVAPFEVL 259
Query: 362 VDSHNGIISHMCLSPDILKLRNTASFFHSAFSHYEDYLSAPFPFGSYKQVFIAPEMTISS 541
D H+G++S++CL ++ KL NT FFHSAFSHYEDYLSA FPFGSYKQVFIAPEM ISS
Sbjct: 260 PDRHSGLLSYLCLPANLPKLWNTVGFFHSAFSHYEDYLSASFPFGSYKQVFIAPEMAISS 319
Query: 542 LCIGASMSIFSSQVLFDEKVIDQ 610
L +GASMSIFSSQ+LFDEKVIDQ
Sbjct: 320 LTLGASMSIFSSQILFDEKVIDQ 342
>ref|XP_002273382.1| PREDICTED: transcription initiation factor TFIID subunit 2-like
isoform 2 [Vitis vinifera]
Length = 1345
Score = 294 bits (753), Expect = 7e-78
Identities = 143/203 (70%), Positives = 165/203 (81%)
Frame = +2
Query: 2 SGEVKQNVKLIRIDYWIEKAETGIHFDRNVLHTDNQIRRAQCWFPCMNNSSQRYXXXXXX 181
SGE KQNVKL+R+DYW+E+AETGIHF+ NVLHTDNQIRRA+CWFPCM+++SQ
Sbjct: 148 SGEPKQNVKLVRVDYWVERAETGIHFEDNVLHTDNQIRRARCWFPCMDDTSQ-------- 199
Query: 182 XXXXXXXXXVAQNFVAVSNGTLLYQVLSKDDPPRKTFVYSLSVPVAARWISLVVAQFEIL 361
VA N VAVS G+LLYQVLSKDDPPRKT+VY L+VPV ARWI L VA FE+L
Sbjct: 200 CCCYDLEFTVAHNLVAVSTGSLLYQVLSKDDPPRKTYVYKLNVPVTARWIQLAVAPFEVL 259
Query: 362 VDSHNGIISHMCLSPDILKLRNTASFFHSAFSHYEDYLSAPFPFGSYKQVFIAPEMTISS 541
D H+G++S++CL ++ KL NT FFHSAFSHYEDYLSA FPFGSYKQVFIAPEM ISS
Sbjct: 260 PDRHSGLLSYLCLPANLPKLWNTVGFFHSAFSHYEDYLSASFPFGSYKQVFIAPEMAISS 319
Query: 542 LCIGASMSIFSSQVLFDEKVIDQ 610
L +GASMSIFSSQ+LFDEKVIDQ
Sbjct: 320 LTLGASMSIFSSQILFDEKVIDQ 342
>emb|CBI15409.3| unnamed protein product [Vitis vinifera]
Length = 1245
Score = 287 bits (735), Expect = 9e-76
Identities = 139/198 (70%), Positives = 161/198 (81%)
Frame = +2
Query: 17 QNVKLIRIDYWIEKAETGIHFDRNVLHTDNQIRRAQCWFPCMNNSSQRYXXXXXXXXXXX 196
QNVKL+R+DYW+E+AETGIHF+ NVLHTDNQIRRA+CWFPCM+++SQ
Sbjct: 307 QNVKLVRVDYWVERAETGIHFEDNVLHTDNQIRRARCWFPCMDDTSQ--------CCCYD 358
Query: 197 XXXXVAQNFVAVSNGTLLYQVLSKDDPPRKTFVYSLSVPVAARWISLVVAQFEILVDSHN 376
VA N VAVS G+LLYQVLSKDDPPRKT+VY L+VPV ARWI L VA FE+L D H+
Sbjct: 359 LEFTVAHNLVAVSTGSLLYQVLSKDDPPRKTYVYKLNVPVTARWIQLAVAPFEVLPDRHS 418
Query: 377 GIISHMCLSPDILKLRNTASFFHSAFSHYEDYLSAPFPFGSYKQVFIAPEMTISSLCIGA 556
G++S++CL ++ KL NT FFHSAFSHYEDYLSA FPFGSYKQVFIAPEM ISSL +GA
Sbjct: 419 GLLSYLCLPANLPKLWNTVGFFHSAFSHYEDYLSASFPFGSYKQVFIAPEMAISSLTLGA 478
Query: 557 SMSIFSSQVLFDEKVIDQ 610
SMSIFSSQ+LFDEKVIDQ
Sbjct: 479 SMSIFSSQILFDEKVIDQ 496
>ref|XP_003549807.1| PREDICTED: transcription initiation factor TFIID subunit 2-like
isoform 2 [Glycine max]
Length = 1368
Score = 275 bits (702), Expect = 6e-72
Identities = 137/203 (67%), Positives = 157/203 (77%)
Frame = +2
Query: 2 SGEVKQNVKLIRIDYWIEKAETGIHFDRNVLHTDNQIRRAQCWFPCMNNSSQRYXXXXXX 181
S E KQNV+ +RIDYWIEKAETGIHF N+LHTDNQIRRA+CWFPC++++SQR
Sbjct: 149 SAEPKQNVRTVRIDYWIEKAETGIHFRNNLLHTDNQIRRARCWFPCIDDNSQR------- 201
Query: 182 XXXXXXXXXVAQNFVAVSNGTLLYQVLSKDDPPRKTFVYSLSVPVAARWISLVVAQFEIL 361
VA N VAVS G+LLYQVLSKD+PP+KT+VY L VPVAARWISL VA FEIL
Sbjct: 202 -CCYDLEFTVAYNLVAVSTGSLLYQVLSKDNPPQKTYVYKLDVPVAARWISLAVAPFEIL 260
Query: 362 VDSHNGIISHMCLSPDILKLRNTASFFHSAFSHYEDYLSAPFPFGSYKQVFIAPEMTISS 541
D +ISHMC P++ K+RNT FFHSAFS Y+DYLS FPF SY QVFI PEM +SS
Sbjct: 261 PDHQFSLISHMCSLPNLSKMRNTVDFFHSAFSCYKDYLSVDFPFDSYTQVFIEPEMAVSS 320
Query: 542 LCIGASMSIFSSQVLFDEKVIDQ 610
L +GASMS+FSSQVLFDEKVIDQ
Sbjct: 321 LSLGASMSVFSSQVLFDEKVIDQ 343
>ref|XP_003549806.1| PREDICTED: transcription initiation factor TFIID subunit 2-like
isoform 1 [Glycine max]
Length = 1388
Score = 275 bits (702), Expect = 6e-72
Identities = 137/203 (67%), Positives = 157/203 (77%)
Frame = +2
Query: 2 SGEVKQNVKLIRIDYWIEKAETGIHFDRNVLHTDNQIRRAQCWFPCMNNSSQRYXXXXXX 181
S E KQNV+ +RIDYWIEKAETGIHF N+LHTDNQIRRA+CWFPC++++SQR
Sbjct: 149 SAEPKQNVRTVRIDYWIEKAETGIHFRNNLLHTDNQIRRARCWFPCIDDNSQR------- 201
Query: 182 XXXXXXXXXVAQNFVAVSNGTLLYQVLSKDDPPRKTFVYSLSVPVAARWISLVVAQFEIL 361
VA N VAVS G+LLYQVLSKD+PP+KT+VY L VPVAARWISL VA FEIL
Sbjct: 202 -CCYDLEFTVAYNLVAVSTGSLLYQVLSKDNPPQKTYVYKLDVPVAARWISLAVAPFEIL 260
Query: 362 VDSHNGIISHMCLSPDILKLRNTASFFHSAFSHYEDYLSAPFPFGSYKQVFIAPEMTISS 541
D +ISHMC P++ K+RNT FFHSAFS Y+DYLS FPF SY QVFI PEM +SS
Sbjct: 261 PDHQFSLISHMCSLPNLSKMRNTVDFFHSAFSCYKDYLSVDFPFDSYTQVFIEPEMAVSS 320
Query: 542 LCIGASMSIFSSQVLFDEKVIDQ 610
L +GASMS+FSSQVLFDEKVIDQ
Sbjct: 321 LSLGASMSVFSSQVLFDEKVIDQ 343