BLASTX nr result

ID: Coptis21_contig00015880 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00015880
         (485 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517005.1| conserved hypothetical protein [Ricinus comm...    58   7e-07
ref|XP_003590109.1| hypothetical protein MTR_1g044470 [Medicago ...    56   3e-06
ref|XP_002319090.1| predicted protein [Populus trichocarpa] gi|2...    55   4e-06

>ref|XP_002517005.1| conserved hypothetical protein [Ricinus communis]
           gi|223543640|gb|EEF45168.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 103

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
 Frame = +1

Query: 112 HNATRTLYEEEEKWMMKRSLISESLQKGPIPPSGPSGCTYIPGNGGPSCH--IKGKMVAG 285
           + A+R LY+++    + + L  +SLQ+G  P +G SGCT IP  GGPSC   I    VAG
Sbjct: 22  YQASRILYDQD----VNKELGVQSLQRGDTPSTGASGCTNIPNTGGPSCPSVINSMNVAG 77

Query: 286 YVFARARAYRHLIRPFGVAA 345
              + A AY  L   FG AA
Sbjct: 78  NGLSHASAYPRLTVEFGAAA 97


>ref|XP_003590109.1| hypothetical protein MTR_1g044470 [Medicago truncatula]
           gi|355479157|gb|AES60360.1| hypothetical protein
           MTR_1g044470 [Medicago truncatula]
          Length = 83

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 23/42 (54%), Positives = 32/42 (76%)
 Frame = +1

Query: 163 RSLISESLQKGPIPPSGPSGCTYIPGNGGPSCHIKGKMVAGY 288
           + L  ++L KGP+ PSGPSGCT+IPG+GG  C I+ + VAG+
Sbjct: 32  KELRLQALDKGPVAPSGPSGCTFIPGSGGTHCPIEERNVAGH 73


>ref|XP_002319090.1| predicted protein [Populus trichocarpa] gi|222857466|gb|EEE95013.1|
           predicted protein [Populus trichocarpa]
          Length = 116

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
 Frame = +1

Query: 139 EEEKWMMKRSLISESLQKGPIPPSGPSGCTYIPGNGGPSCHIKGKMVAGYVFARA-RAYR 315
           E E+W  K     +SLQ+GP+PPSG S CT+IPG G   C +     AG+  A A  A+ 
Sbjct: 34  EGERWSEKIVGNIQSLQRGPVPPSGGSPCTHIPGRGSGKCSLGEMNFAGHTVALAPPAFP 93

Query: 316 HLIRPFGVAA 345
             I  FG AA
Sbjct: 94  DAIMNFGAAA 103


Top