BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00015825
         (2051 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-...   411   e-155
emb|CBI40014.3| unnamed protein product [Vitis vinifera]              408   e-154
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...   360   e-139
ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-...   350   e-138
ref|XP_002325455.1| predicted protein [Populus trichocarpa] gi|2...   366   e-138

>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 578

 Score =  411 bits (1057), Expect(2) = e-155
 Identities = 235/486 (48%), Positives = 283/486 (58%), Gaps = 4/486 (0%)
 Frame = -1

Query: 1928 MACLLPQFKCPXXXXXXXXXXXXXXXFLKTRQPVCFRVQCSL----PMTTTMATTVXXXX 1761
            M+CLLPQFKCP                 K R+ + FRVQC+L    P  +T  T V    
Sbjct: 1    MSCLLPQFKCPPDTFSTHPKLHILCKSPKNREAIYFRVQCALSTTSPPLSTSTTAVLDIE 60

Query: 1760 XXXXXXXXXXXXSVAAERPLTYTGAIGPPIQGNFKSTLPIEIIPTGXXXXXXXXXXXXXX 1581
                        SVAA RP TY G +GPP + NF++TL  E + T               
Sbjct: 61   KLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEAVA 120

Query: 1580 XXXXXXXXXXXXXLMFGSEISANSDHKAPDFLSETDFNKNKQTMVVDMERVATLGLNPLG 1401
                          + G   SA S+ K   FLS  D ++ ++    + ER+  LG + +G
Sbjct: 121  LAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILG-DSVG 179

Query: 1400 VKDIKEEENSVELSTEDFENLDPTXXXXXXXXXXXXXSIAXXXXXXXXXXXXXXXXXXXX 1221
             +    + NS++  TED ++L+PT             SI                     
Sbjct: 180  AETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAEKA 239

Query: 1220 XXXXXXXXXXXXXXXXXXTVQDVDYSDPXXXXXXXXXXXXXXXSNEELEFSEGIQDLLKL 1041
                              ++Q+VDYSDP               + EELE SEGIQDLLKL
Sbjct: 240  SAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKL 299

Query: 1040 ESLHDELAERCGSEPTFXXXXXXXXADQRTLRKRLNHGIQCKDKMIKSNIRLVISIAKNY 861
            E L ++L ER G +PTF         DQ+TLR+R N+GI+CKDKMIKSNIRLVISIAKNY
Sbjct: 300  EKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNY 359

Query: 860  QGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 681
            QGAGMN+QDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF
Sbjct: 360  QGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 419

Query: 680  HMVEATYRVREAKKQLYNENGRHPNDKEVAEAAGLTMKRLSAVMLTPKAPRSLDQKIGFN 501
            HMVEATYRV+EA+KQLY+ENGRHPN++EVAEA GL+MKRL+AV+LTPKAPRSLDQKIG N
Sbjct: 420  HMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGIN 479

Query: 500  LNMKPS 483
             N+KPS
Sbjct: 480  QNLKPS 485



 Score =  166 bits (421), Expect(2) = e-155
 Identities = 79/93 (84%), Positives = 90/93 (96%)
 Frame = -3

Query: 465 EVIADPEAETAEDILIKQFMKQDLDKVLNSLNPRENQVVRWRFGLEDGRMKTLQEIGELM 286
           EVIADP+AETAE++LIKQFM++DL+KVLNSLNPRE QV+RWR+GLEDGR KTLQEIGELM
Sbjct: 486 EVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELM 545

Query: 285 GVSRERVRQIESCAFRKLKNKKRTKHLQQYVDS 187
           GVSRER+RQIESCAFRKLKNK+RTKHLQQY+ S
Sbjct: 546 GVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 578


>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
          Length = 575

 Score =  408 bits (1048), Expect(2) = e-154
 Identities = 235/486 (48%), Positives = 283/486 (58%), Gaps = 4/486 (0%)
 Frame = -1

Query: 1928 MACLLPQFKCPXXXXXXXXXXXXXXXFLKTRQPVCFRVQCSL----PMTTTMATTVXXXX 1761
            M+CLLPQFKCP                 K R+ + FRVQC+L    P  +T  T V    
Sbjct: 1    MSCLLPQFKCPPDTFSTHPKLHILS---KNREAIYFRVQCALSTTSPPLSTSTTAVLDIE 57

Query: 1760 XXXXXXXXXXXXSVAAERPLTYTGAIGPPIQGNFKSTLPIEIIPTGXXXXXXXXXXXXXX 1581
                        SVAA RP TY G +GPP + NF++TL  E + T               
Sbjct: 58   KLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEAVA 117

Query: 1580 XXXXXXXXXXXXXLMFGSEISANSDHKAPDFLSETDFNKNKQTMVVDMERVATLGLNPLG 1401
                          + G   SA S+ K   FLS  D ++ ++    + ER+  LG + +G
Sbjct: 118  LAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILG-DSVG 176

Query: 1400 VKDIKEEENSVELSTEDFENLDPTXXXXXXXXXXXXXSIAXXXXXXXXXXXXXXXXXXXX 1221
             +    + NS++  TED ++L+PT             SI                     
Sbjct: 177  AETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAEKA 236

Query: 1220 XXXXXXXXXXXXXXXXXXTVQDVDYSDPXXXXXXXXXXXXXXXSNEELEFSEGIQDLLKL 1041
                              ++Q+VDYSDP               + EELE SEGIQDLLKL
Sbjct: 237  SAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKL 296

Query: 1040 ESLHDELAERCGSEPTFXXXXXXXXADQRTLRKRLNHGIQCKDKMIKSNIRLVISIAKNY 861
            E L ++L ER G +PTF         DQ+TLR+R N+GI+CKDKMIKSNIRLVISIAKNY
Sbjct: 297  EKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNY 356

Query: 860  QGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 681
            QGAGMN+QDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF
Sbjct: 357  QGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF 416

Query: 680  HMVEATYRVREAKKQLYNENGRHPNDKEVAEAAGLTMKRLSAVMLTPKAPRSLDQKIGFN 501
            HMVEATYRV+EA+KQLY+ENGRHPN++EVAEA GL+MKRL+AV+LTPKAPRSLDQKIG N
Sbjct: 417  HMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGIN 476

Query: 500  LNMKPS 483
             N+KPS
Sbjct: 477  QNLKPS 482



 Score =  166 bits (421), Expect(2) = e-154
 Identities = 79/93 (84%), Positives = 90/93 (96%)
 Frame = -3

Query: 465 EVIADPEAETAEDILIKQFMKQDLDKVLNSLNPRENQVVRWRFGLEDGRMKTLQEIGELM 286
           EVIADP+AETAE++LIKQFM++DL+KVLNSLNPRE QV+RWR+GLEDGR KTLQEIGELM
Sbjct: 483 EVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELM 542

Query: 285 GVSRERVRQIESCAFRKLKNKKRTKHLQQYVDS 187
           GVSRER+RQIESCAFRKLKNK+RTKHLQQY+ S
Sbjct: 543 GVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 575


>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
            gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
            rpoD1, putative [Ricinus communis]
          Length = 569

 Score =  360 bits (923), Expect(2) = e-139
 Identities = 221/488 (45%), Positives = 269/488 (55%), Gaps = 6/488 (1%)
 Frame = -1

Query: 1928 MACLLPQFKCPXXXXXXXXXXXXXXXF-----LKTRQPVCFRVQCSLPMTT-TMATTVXX 1767
            M+CLLPQFKC                       K+R+P+ +R QC L  T+ + +T V  
Sbjct: 2    MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTAVLD 61

Query: 1766 XXXXXXXXXXXXXXSVAAERPLTYTGAIGPPIQGNFKSTLPIEIIPTGXXXXXXXXXXXX 1587
                          S+A   P TY           F STL  E + T             
Sbjct: 62   LEKLRLPSFEAPSDSIAPNSPWTYA---------TFGSTLATETLITSDEAVIAAAAAEA 112

Query: 1586 XXXXXXXXXXXXXXXLMFGSEISANSDHKAPDFLSETDFNKNKQTMVVDMERVATLGLNP 1407
                           L+  +  SA ++ K     S +  + ++     + ER   +G + 
Sbjct: 113  VALARAAVKVAKDAALLVKNFPSAETESK---LTSPSTIDASRWPQFTETERARIIG-DS 168

Query: 1406 LGVKDIKEEENSVELSTEDFENLDPTXXXXXXXXXXXXXSIAXXXXXXXXXXXXXXXXXX 1227
            +  +    EE+S++ S ++ + L+ T              IA                  
Sbjct: 169  VATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAVE 228

Query: 1226 XXXXXXXXXXXXXXXXXXXXTVQDVDYSDPXXXXXXXXXXXXXXXSNEELEFSEGIQDLL 1047
                                ++Q+VDYSDP               ++EELE S  IQDLL
Sbjct: 229  KAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDLL 288

Query: 1046 KLESLHDELAERCGSEPTFXXXXXXXXADQRTLRKRLNHGIQCKDKMIKSNIRLVISIAK 867
            KLE L +ELAER G +PTF         DQRTLRKR+NHG  CKDKMIKSNIRLVISIAK
Sbjct: 289  KLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIAK 348

Query: 866  NYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 687
            NYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL
Sbjct: 349  NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 408

Query: 686  PFHMVEATYRVREAKKQLYNENGRHPNDKEVAEAAGLTMKRLSAVMLTPKAPRSLDQKIG 507
            PFHMVEATYRV+EA+KQLY+ENGRHP+D+EVAEAAGL+MKRLSAV+LTPKAPRSLDQKIG
Sbjct: 409  PFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIG 468

Query: 506  FNLNMKPS 483
             N+++KPS
Sbjct: 469  MNMDLKPS 476



 Score =  163 bits (412), Expect(2) = e-139
 Identities = 79/91 (86%), Positives = 88/91 (96%)
 Frame = -3

Query: 465 EVIADPEAETAEDILIKQFMKQDLDKVLNSLNPRENQVVRWRFGLEDGRMKTLQEIGELM 286
           EVIADPEAETAE++L+KQFMKQDL+KVLN+LNPRE QVVRWRFGLEDGRMKTLQEIGE+M
Sbjct: 477 EVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIM 536

Query: 285 GVSRERVRQIESCAFRKLKNKKRTKHLQQYV 193
           GVSRER+RQIES AFRKLKNKKRTK L+QY+
Sbjct: 537 GVSRERIRQIESSAFRKLKNKKRTKQLKQYL 567


>ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
            gi|449473951|ref|XP_004154029.1| PREDICTED: RNA
            polymerase sigma factor sigB-like [Cucumis sativus]
          Length = 580

 Score =  350 bits (899), Expect(2) = e-138
 Identities = 218/498 (43%), Positives = 263/498 (52%), Gaps = 16/498 (3%)
 Frame = -1

Query: 1928 MACLLPQFKC------------PXXXXXXXXXXXXXXXFLKTRQPVCFRVQCSL----PM 1797
            M+CLLPQFKC                            + K R P   R QC L    P 
Sbjct: 1    MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 1796 TTTMATTVXXXXXXXXXXXXXXXXSVAAERPLTYTGAIGPPIQGNFKSTLPIEIIPTGXX 1617
            T+T   T                 SV+ ER  +Y GA+   +     ++    I      
Sbjct: 61   TSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEASIAAAAAE 120

Query: 1616 XXXXXXXXXXXXXXXXXXXXXXXXXLMFGSEISANSDHKAPDFLSETDFNKNKQTMVVDM 1437
                                      +  + I+++          + D    K    ++ 
Sbjct: 121  AVTLAKAAVKVARDAA----------LLANNINSSRAGTKSQSSPKPDALHFKWAQFMES 170

Query: 1436 ERVATLGLNPLGVKDIKEEENSVELSTEDFENLDPTXXXXXXXXXXXXXSIAXXXXXXXX 1257
            ER   +G  P+GV     E +++E ST + ++++PT             SI         
Sbjct: 171  ERADIIG-EPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTE 229

Query: 1256 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVQDVDYSDPXXXXXXXXXXXXXXXSNEEL 1077
                                          +VQ+VDYSDP               + EEL
Sbjct: 230  RKARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEEL 289

Query: 1076 EFSEGIQDLLKLESLHDELAERCGSEPTFXXXXXXXXADQRTLRKRLNHGIQCKDKMIKS 897
            E SEGIQDLLKLE L +EL ER G+EPTF         +QRTLRKRLN+G  CKDKMIKS
Sbjct: 290  ELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKS 349

Query: 896  NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKS 717
            NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRK 
Sbjct: 350  NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKF 409

Query: 716  LSDQSRTIRLPFHMVEATYRVREAKKQLYNENGRHPNDKEVAEAAGLTMKRLSAVMLTPK 537
            LSDQSRTIRLPFHMVEATYRV+EA+KQL +ENGRHP+DKE+AEAAGL+MKRL+AV++TPK
Sbjct: 410  LSDQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPK 469

Query: 536  APRSLDQKIGFNLNMKPS 483
            APRSL+QKIG N N+KPS
Sbjct: 470  APRSLEQKIGINQNLKPS 487



 Score =  171 bits (432), Expect(2) = e-138
 Identities = 82/93 (88%), Positives = 90/93 (96%)
 Frame = -3

Query: 465 EVIADPEAETAEDILIKQFMKQDLDKVLNSLNPRENQVVRWRFGLEDGRMKTLQEIGELM 286
           EVI+DPEAET ED+LIKQFMKQDL+KVL+SLNPRE QV+RWRFG+EDGRMKTLQEIGE+M
Sbjct: 488 EVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIM 547

Query: 285 GVSRERVRQIESCAFRKLKNKKRTKHLQQYVDS 187
           GVSRER+RQIESCAFRKLKNKKRTKHLQQYV S
Sbjct: 548 GVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 580


>ref|XP_002325455.1| predicted protein [Populus trichocarpa] gi|222862330|gb|EEE99836.1|
            predicted protein [Populus trichocarpa]
          Length = 564

 Score =  366 bits (940), Expect(2) = e-138
 Identities = 220/483 (45%), Positives = 266/483 (55%), Gaps = 1/483 (0%)
 Frame = -1

Query: 1928 MACLLPQFKCPXXXXXXXXXXXXXXXFLKTRQPVCFRVQCSLPMTT-TMATTVXXXXXXX 1752
            M+CLLPQFKC                     +P CFR QC+L   + + +T V       
Sbjct: 1    MSCLLPQFKCQPDSFSIH----------SNGEPFCFRAQCALSSASPSTSTAVLNLEKLR 50

Query: 1751 XXXXXXXXXSVAAERPLTYTGAIGPPIQGNFKSTLPIEIIPTGXXXXXXXXXXXXXXXXX 1572
                     S+AA RP TY G IGPP +  F ++L  E +                    
Sbjct: 51   LPSLESHSDSIAANRPWTYIGGIGPPKEPLFGTSLATETLIINDEAVIAAAAAEAVALAR 110

Query: 1571 XXXXXXXXXXLMFGSEISANSDHKAPDFLSETDFNKNKQTMVVDMERVATLGLNPLGVKD 1392
                       M  +  S N++ K P   S  D   +  +++   ER   +G++      
Sbjct: 111  AAVKVAKDAAEMAKNYCSVNTETKIP-IASTADSFSSMWSLLTGKERADIIGVSFSAETG 169

Query: 1391 IKEEENSVELSTEDFENLDPTXXXXXXXXXXXXXSIAXXXXXXXXXXXXXXXXXXXXXXX 1212
            ++EE  S +  TE+ +   PT             SI                        
Sbjct: 170  LREE-CSTQYPTEESDCFGPTHEELALLEKQLSESIVVRSKRQTQRKAKRARAAEKAAAN 228

Query: 1211 XXXXXXXXXXXXXXXTVQDVDYSDPXXXXXXXXXXXXXXXSNEELEFSEGIQDLLKLESL 1032
                            VQ+VD SDP               + EE+E SEGIQDLLKLE +
Sbjct: 229  FVFMKSGSACKKKRVPVQEVDQSDPLRFFRGASTSSRLLSATEEVELSEGIQDLLKLERI 288

Query: 1031 HDELAERCGSEPTFXXXXXXXXADQRTLRKRLNHGIQCKDKMIKSNIRLVISIAKNYQGA 852
             +EL ER G +PTF         DQ TLRKRLN+ I CKDKMIKSNIRLVISIAKNYQGA
Sbjct: 289  EEELKERFGGKPTFAQWAAAARVDQITLRKRLNYAILCKDKMIKSNIRLVISIAKNYQGA 348

Query: 851  GMNLQDLVQEGCRGLVRGTEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV 672
            GMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWI+QAVR+SLSDQSRTIRLPFHMV
Sbjct: 349  GMNLQDLVQEGCRGLVRGVEKFDASKGFKFSTYAHWWIRQAVRRSLSDQSRTIRLPFHMV 408

Query: 671  EATYRVREAKKQLYNENGRHPNDKEVAEAAGLTMKRLSAVMLTPKAPRSLDQKIGFNLNM 492
            +ATYRV+EA+KQ Y+ENGRHP+DKEVAEA GL+MKRLSAV+LTPKAPRSLDQK+GFN+++
Sbjct: 409  DATYRVKEARKQFYSENGRHPDDKEVAEATGLSMKRLSAVLLTPKAPRSLDQKMGFNMDL 468

Query: 491  KPS 483
            K S
Sbjct: 469  KLS 471



 Score =  154 bits (388), Expect(2) = e-138
 Identities = 74/93 (79%), Positives = 86/93 (92%)
 Frame = -3

Query: 465 EVIADPEAETAEDILIKQFMKQDLDKVLNSLNPRENQVVRWRFGLEDGRMKTLQEIGELM 286
           EV ADPEAETAED+L+K+FMK+DL++VL SL+PRENQV+RWRFG+EDGRMKTLQEIGELM
Sbjct: 472 EVTADPEAETAEDLLMKEFMKKDLERVLESLSPRENQVIRWRFGMEDGRMKTLQEIGELM 531

Query: 285 GVSRERVRQIESCAFRKLKNKKRTKHLQQYVDS 187
           GVSRER+RQIE  AFRKLKNK RTK L+QY+ S
Sbjct: 532 GVSRERIRQIELSAFRKLKNKNRTKQLRQYLVS 564