BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00015780
         (599 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACJ84185.1| unknown [Medicago truncatula] gi|388516619|gb|AFK...   144   1e-32
ref|XP_003625462.1| Photosystem I reaction center subunit IV A [...   144   1e-32
ref|XP_002521161.1| photosystem I reaction center subunit IV A, ...   141   1e-31
ref|XP_002301832.1| hypothetical protein POPTRDRAFT_711610 [Popu...   140   1e-31
ref|XP_002266424.1| PREDICTED: photosystem I reaction center sub...   140   2e-31

>gb|ACJ84185.1| unknown [Medicago truncatula] gi|388516619|gb|AFK46371.1| unknown
           [Medicago truncatula]
          Length = 138

 Score =  144 bits (363), Expect = 1e-32
 Identities = 82/140 (58%), Positives = 91/140 (65%), Gaps = 4/140 (2%)
 Frame = +1

Query: 100 MATCNMASAASGFVMXXXXXXXXXXXXX---RINLVFFPTKSN-NSRLVVRXXXXXXXXX 267
           MA+CNMASAASGFV+                R+N+V +PT  N NSRLVVR         
Sbjct: 1   MASCNMASAASGFVLSPNNVSCNTNTNLLVSRMNMVMYPTTRNTNSRLVVRASEEAAATP 60

Query: 268 XXXXXXXXXXXXXXXXXXGPKRGTKVKILRKESYWFNGIGSVVAVDQDPSSRYPVVVRFN 447
                             GPKRG KVK+LRKESYWFNGIGSVVAVDQDP++RYPVVVRFN
Sbjct: 61  TVEGEAAPKTKPPPI---GPKRGAKVKVLRKESYWFNGIGSVVAVDQDPNTRYPVVVRFN 117

Query: 448 KVNYANVSTNNYAFDEIQEV 507
           KVNYANVSTNNYA DEI+EV
Sbjct: 118 KVNYANVSTNNYALDEIEEV 137


>ref|XP_003625462.1| Photosystem I reaction center subunit IV A [Medicago truncatula]
           gi|355500477|gb|AES81680.1| Photosystem I reaction
           center subunit IV A [Medicago truncatula]
           gi|388502410|gb|AFK39271.1| unknown [Medicago
           truncatula]
          Length = 138

 Score =  144 bits (363), Expect = 1e-32
 Identities = 82/140 (58%), Positives = 91/140 (65%), Gaps = 4/140 (2%)
 Frame = +1

Query: 100 MATCNMASAASGFVMXXXXXXXXXXXXX---RINLVFFPTKSN-NSRLVVRXXXXXXXXX 267
           MA+CNMASAASGFV+                R+N+V +PT  N NSRLVVR         
Sbjct: 1   MASCNMASAASGFVLSPNNVSGNTNTNLLVSRMNMVMYPTTRNTNSRLVVRASEEAAATP 60

Query: 268 XXXXXXXXXXXXXXXXXXGPKRGTKVKILRKESYWFNGIGSVVAVDQDPSSRYPVVVRFN 447
                             GPKRG KVK+LRKESYWFNGIGSVVAVDQDP++RYPVVVRFN
Sbjct: 61  TVEGEAAPKTKPPPI---GPKRGAKVKVLRKESYWFNGIGSVVAVDQDPNTRYPVVVRFN 117

Query: 448 KVNYANVSTNNYAFDEIQEV 507
           KVNYANVSTNNYA DEI+EV
Sbjct: 118 KVNYANVSTNNYALDEIEEV 137


>ref|XP_002521161.1| photosystem I reaction center subunit IV A, chloroplast precursor
           [Ricinus communis] gi|223539730|gb|EEF41312.1|
           photosystem I reaction center subunit IV A, chloroplast
           precursor [Ricinus communis]
          Length = 141

 Score =  141 bits (355), Expect = 1e-31
 Identities = 80/141 (56%), Positives = 93/141 (65%), Gaps = 5/141 (3%)
 Frame = +1

Query: 100 MATCNMASAASGFVMXXXXXXXXXXXXXRINLVFFPTKSNN---SRLVVRXXXXXXXXXX 270
           MA+C+MASAASGF++             R N+V+FP+K+NN   SRLVVR          
Sbjct: 1   MASCSMASAASGFLLTPNVPANTNSSS-RSNMVYFPSKNNNINNSRLVVRAAEEAAAPAP 59

Query: 271 XXXXXXXXXXXXXXXXX--GPKRGTKVKILRKESYWFNGIGSVVAVDQDPSSRYPVVVRF 444
                              GPKRGTKVKILR+ESYW+NGIGSVVAVDQDP +RYPVVVRF
Sbjct: 60  ATTTAPAEGEAPKPKPPPIGPKRGTKVKILRRESYWYNGIGSVVAVDQDPKTRYPVVVRF 119

Query: 445 NKVNYANVSTNNYAFDEIQEV 507
           +KVNYANVSTNNYA DEI+EV
Sbjct: 120 DKVNYANVSTNNYALDEIEEV 140


>ref|XP_002301832.1| hypothetical protein POPTRDRAFT_711610 [Populus trichocarpa]
           gi|222843558|gb|EEE81105.1| hypothetical protein
           POPTRDRAFT_711610 [Populus trichocarpa]
          Length = 140

 Score =  140 bits (354), Expect = 1e-31
 Identities = 81/140 (57%), Positives = 90/140 (64%), Gaps = 4/140 (2%)
 Frame = +1

Query: 100 MATCNMASAASGFVMXXXXXXXXXXXXXRINLVFFPTKSNN---SRLVVRXXXXXXXXXX 270
           MA+CNMASAASGF +             +  ++FF +K+NN   SRLVVR          
Sbjct: 1   MASCNMASAASGFALAPTVATNTNSTS-KPTMLFFSSKNNNKNYSRLVVRSAEEGASPPA 59

Query: 271 XXXXXXXXXXXXXXXXX-GPKRGTKVKILRKESYWFNGIGSVVAVDQDPSSRYPVVVRFN 447
                             GPKRGTKVKILRKESYWFNG+GSVVAVDQDP SRYPVVVRFN
Sbjct: 60  ATTEPAVAEAPKPKPPPIGPKRGTKVKILRKESYWFNGVGSVVAVDQDPRSRYPVVVRFN 119

Query: 448 KVNYANVSTNNYAFDEIQEV 507
           KVNYANVSTNNYA DEI+EV
Sbjct: 120 KVNYANVSTNNYALDEIEEV 139


>ref|XP_002266424.1| PREDICTED: photosystem I reaction center subunit IV A,
           chloroplastic-like [Vitis vinifera]
          Length = 143

 Score =  140 bits (353), Expect = 2e-31
 Identities = 79/142 (55%), Positives = 86/142 (60%), Gaps = 6/142 (4%)
 Frame = +1

Query: 100 MATCNMASAASGFVMXXXXXXXXXXXXXRINLVFFPTKSNNSRLVVRXXXXXXXXXXXXX 279
           MA+C+MASAASGFV+                ++F P    NSRLVVR             
Sbjct: 1   MASCSMASAASGFVLTPTPNSTTKPTSTPSMVIFSPKNHRNSRLVVRASEGGPPPPPPPP 60

Query: 280 XXXXXXXXXXXXXX------GPKRGTKVKILRKESYWFNGIGSVVAVDQDPSSRYPVVVR 441
                               GPKRGTKVKILRKESYW+NGIGSVVAVDQDP +RYPVVVR
Sbjct: 61  PPAPAPVAEGGAPPPKPPPIGPKRGTKVKILRKESYWYNGIGSVVAVDQDPKTRYPVVVR 120

Query: 442 FNKVNYANVSTNNYAFDEIQEV 507
           FNKVNYANVSTNNYA DEIQEV
Sbjct: 121 FNKVNYANVSTNNYALDEIQEV 142