BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00015607
         (362 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35191.3| unnamed protein product [Vitis vinifera]               57   1e-06
ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat...    56   3e-06
ref|XP_002526170.1| pentatricopeptide repeat-containing protein,...    56   3e-06
ref|XP_002525805.1| pentatricopeptide repeat-containing protein,...    55   8e-06

>emb|CBI35191.3| unnamed protein product [Vitis vinifera]
          Length = 248

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 29/77 (37%), Positives = 48/77 (62%)
 Frame = -1

Query: 359 LYCEMQEKGIAADDLTFNILVQGFLDQKNDTHKAMQLLNTMIDKGFSPNAKTTSLLADLF 180
           L+ EM E   +AD  T+N + QGFL + N+T +A+QLL  M+ +GFS +  TT+LL  + 
Sbjct: 172 LFMEMDENACSADGCTYNTITQGFL-RNNETSRAIQLLEEMLARGFSCDVSTTTLLVGML 230

Query: 179 VEGGPNCKEMEMLLKHL 129
            + G +    ++L K++
Sbjct: 231 SDDGLDQSVKQILCKYV 247


>ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
 Frame = -1

Query: 359 LYCEMQEKGIAADDLTFNILVQGFLDQKNDTHKAMQLLNTMIDKGFSPNAKTTSLLADLF 180
           L+ EM E   +AD  T+N + QGFL + N+T +A+QLL  M+ +GFS +  TT+LL  + 
Sbjct: 516 LFMEMDENACSADGCTYNTITQGFL-RNNETSRAIQLLEEMLARGFSCDVSTTTLLVGML 574

Query: 179 VEGGPNCKE---MEMLLKHL 129
            + G +  E   +E +  HL
Sbjct: 575 SDDGLDQSEAHKLEDMFPHL 594


>ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534547|gb|EEF36246.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 25/60 (41%), Positives = 40/60 (66%)
 Frame = -1

Query: 359 LYCEMQEKGIAADDLTFNILVQGFLDQKNDTHKAMQLLNTMIDKGFSPNAKTTSLLADLF 180
           L+ +M+E G   D+++FN +++GFL Q+N   KAM+ L  M +K FSPN   T +L +L+
Sbjct: 416 LFVQMEESGCEQDEISFNFIIRGFL-QENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLY 474


>ref|XP_002525805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534892|gb|EEF36579.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 182

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 28/63 (44%), Positives = 41/63 (65%)
 Frame = -1

Query: 359 LYCEMQEKGIAADDLTFNILVQGFLDQKNDTHKAMQLLNTMIDKGFSPNAKTTSLLADLF 180
           ++ EM+E G   D  ++N+++QGFL + ND   A QL++ MIDKGFS +  T SL+AD  
Sbjct: 117 VFREMEEGGSLPDGCSYNVIIQGFL-RHNDLSGATQLIHEMIDKGFSADVTTPSLVADSV 175

Query: 179 VEG 171
             G
Sbjct: 176 SNG 178