BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00015522
         (570 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI18915.3| unnamed protein product [Vitis vinifera]              139   3e-31
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...   137   2e-30
gb|AAQ08516.1| RNA polymerase II largest subunit [Magnolia x sou...   136   2e-30
gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron t...   136   3e-30
gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orient...   135   5e-30

>emb|CBI18915.3| unnamed protein product [Vitis vinifera]
          Length = 1565

 Score =  139 bits (350), Expect = 3e-31
 Identities = 70/118 (59%), Positives = 85/118 (72%), Gaps = 10/118 (8%)
 Frame = +3

Query: 246 FMLSQLSTQVQVHSPSHLSLTQLSNWKSL----------TEDSKFKQAQRIRNPKHRLKK 395
           F  S++       +   +S ++ +N KSL          +ED KFKQAQ+IRNPK+RLKK
Sbjct: 107 FNCSKILADELTENVKWISKSKFANMKSLKLGHSLLHCKSEDHKFKQAQKIRNPKNRLKK 166

Query: 396 VLDACKNKLKCEGGDDSEAQVQDLDEPVKKSRGGCGAQQPKITIDGMKMVAEYKAQRK 569
           +LDACKNK KCEGGD+ E Q  D DEPVKKSRGGCGAQQPK+TI+GMKM+AEYK QRK
Sbjct: 167 ILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTIEGMKMIAEYKIQRK 224


>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
           vinifera]
          Length = 1848

 Score =  137 bits (344), Expect = 2e-30
 Identities = 63/78 (80%), Positives = 70/78 (89%)
 Frame = +3

Query: 336 EDSKFKQAQRIRNPKHRLKKVLDACKNKLKCEGGDDSEAQVQDLDEPVKKSRGGCGAQQP 515
           ED KFKQAQ+IRNPK+RLKK+LDACKNK KCEGGD+ E Q  D DEPVKKSRGGCGAQQP
Sbjct: 117 EDHKFKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQP 176

Query: 516 KITIDGMKMVAEYKAQRK 569
           K+TI+GMKM+AEYK QRK
Sbjct: 177 KLTIEGMKMIAEYKIQRK 194


>gb|AAQ08516.1| RNA polymerase II largest subunit [Magnolia x soulangeana]
          Length = 1010

 Score =  136 bits (343), Expect = 2e-30
 Identities = 61/78 (78%), Positives = 71/78 (91%)
 Frame = +3

Query: 336 EDSKFKQAQRIRNPKHRLKKVLDACKNKLKCEGGDDSEAQVQDLDEPVKKSRGGCGAQQP 515
           ED KFKQ+Q+IRNPKHRL+KVLDACKNK KC+GGDD E + QDL+EPVKK RGGCGAQQP
Sbjct: 36  EDHKFKQSQKIRNPKHRLRKVLDACKNKTKCDGGDDIEVRDQDLEEPVKKRRGGCGAQQP 95

Query: 516 KITIDGMKMVAEYKAQRK 569
           K+T++GMKM+AEYKA RK
Sbjct: 96  KLTVEGMKMIAEYKATRK 113


>gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron tulipifera]
          Length = 1010

 Score =  136 bits (342), Expect = 3e-30
 Identities = 61/78 (78%), Positives = 71/78 (91%)
 Frame = +3

Query: 336 EDSKFKQAQRIRNPKHRLKKVLDACKNKLKCEGGDDSEAQVQDLDEPVKKSRGGCGAQQP 515
           E+ KFKQAQ+IRNPKHRL+KVLDACKNK +CEGGDD E + QDL+EPVKK RGGCGAQQP
Sbjct: 36  EEHKFKQAQKIRNPKHRLRKVLDACKNKTRCEGGDDIEVRDQDLEEPVKKRRGGCGAQQP 95

Query: 516 KITIDGMKMVAEYKAQRK 569
           K+T++GMKM+AEYKA RK
Sbjct: 96  KLTVEGMKMIAEYKATRK 113


>gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orientale]
          Length = 1010

 Score =  135 bits (340), Expect = 5e-30
 Identities = 60/78 (76%), Positives = 72/78 (92%)
 Frame = +3

Query: 336 EDSKFKQAQRIRNPKHRLKKVLDACKNKLKCEGGDDSEAQVQDLDEPVKKSRGGCGAQQP 515
           ED KFKQ+QRI+NPKHRL+KVLDACKNK KC+GGD+ + Q +DL++PVKKSRGGCGAQQP
Sbjct: 36  EDHKFKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQP 95

Query: 516 KITIDGMKMVAEYKAQRK 569
           K+TI+GMKM+AEYK QRK
Sbjct: 96  KLTIEGMKMIAEYKIQRK 113