BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00015513
         (330 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28010.3| unnamed protein product [Vitis vinifera]              143   2e-32
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   143   2e-32
emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]   137   1e-30
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   122   2e-26
ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Ar...   119   3e-25

>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  143 bits (360), Expect = 2e-32
 Identities = 66/109 (60%), Positives = 84/109 (77%)
 Frame = -1

Query: 330  SNQIGSAADSWLAFMDRLLTLGDECASEKQCLREKMVHLIDIYYDSLDAPKTGKKVEVPK 151
            S+ IG AAD+WL FMDRLLTL D+C+ EK+CL+ KM+ L DIYYD+LDAPK+G KV V K
Sbjct: 695  SSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSK 754

Query: 150  QLKAEKFPHFMERQNSYCSKSVLGLIYDEVDLFRTTELQSNDEWKLPCF 4
            +LKAEKFPHFM R++SY S S+LG IYD V+ F+     + + W+LP F
Sbjct: 755  ELKAEKFPHFMGRESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPLF 803


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  143 bits (360), Expect = 2e-32
 Identities = 66/109 (60%), Positives = 84/109 (77%)
 Frame = -1

Query: 330  SNQIGSAADSWLAFMDRLLTLGDECASEKQCLREKMVHLIDIYYDSLDAPKTGKKVEVPK 151
            S+ IG AAD+WL FMDRLLTL D+C+ EK+CL+ KM+ L DIYYD+LDAPK+G KV V K
Sbjct: 709  SSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSK 768

Query: 150  QLKAEKFPHFMERQNSYCSKSVLGLIYDEVDLFRTTELQSNDEWKLPCF 4
            +LKAEKFPHFM R++SY S S+LG IYD V+ F+     + + W+LP F
Sbjct: 769  ELKAEKFPHFMGRESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPLF 817


>emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
          Length = 1202

 Score =  137 bits (344), Expect = 1e-30
 Identities = 65/110 (59%), Positives = 81/110 (73%)
 Frame = -1

Query: 330  SNQIGSAADSWLAFMDRLLTLGDECASEKQCLREKMVHLIDIYYDSLDAPKTGKKVEVPK 151
            S+ IG AAD+WL FMDRLLTL D+C+ EK+CL+ KM+ L DIYYD+LDAPK+G KV V K
Sbjct: 978  SSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSK 1037

Query: 150  QLKAEKFPHFMERQNSYCSKSVLGLIYDEVDLFRTTELQSNDEWKLPCFR 1
            +LKAEKFPHFM R++SY S S+LG IYD V+ F+     + D     C R
Sbjct: 1038 ELKAEKFPHFMGRESSYHSTSILGQIYDAVESFQPENQSTKDAVPQACLR 1087


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  122 bits (307), Expect = 2e-26
 Identities = 64/110 (58%), Positives = 79/110 (71%), Gaps = 1/110 (0%)
 Frame = -1

Query: 330  SNQIGSAADSWLAFMDRLLTLGDECASEKQCLREKMVHLIDIYYDSLDAPKTGKKVEVPK 151
            SN IG AADSWL  MDRLL LGDE A EK  +++KM+ LIDIYYD+LDAPK G KV +P 
Sbjct: 749  SNVIGIAADSWLTIMDRLLILGDERAEEKAEMKKKMLKLIDIYYDALDAPKKGDKVYLPN 808

Query: 150  QLKAEKFPHFMERQNSYCSKSVLGLIYDEVDLFRTTE-LQSNDEWKLPCF 4
            +L+ + FPH+MER+  + S S+LGLIYD V    T E   S++  KLPCF
Sbjct: 809  ELRPDIFPHYMEREKKFKSTSILGLIYDFVKSQTTEEPTPSSEISKLPCF 858


>ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
            gi|322967571|sp|O82189.2|RDR4_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 4;
            Short=AtRDRP4; AltName: Full=RNA-directed RNA polymerase
            4 gi|330251849|gb|AEC06943.1| RNA-dependent RNA
            polymerase family protein [Arabidopsis thaliana]
          Length = 927

 Score =  119 bits (298), Expect = 3e-25
 Identities = 57/109 (52%), Positives = 75/109 (68%)
 Frame = -1

Query: 330  SNQIGSAADSWLAFMDRLLTLGDECASEKQCLREKMVHLIDIYYDSLDAPKTGKKVEVPK 151
            S+ IG AADSWLA MDR LTLGDE   EK  +++KM+ L DIYYD++DAPKTG +V +P 
Sbjct: 745  SSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAPKTGTEVNLPL 804

Query: 150  QLKAEKFPHFMERQNSYCSKSVLGLIYDEVDLFRTTELQSNDEWKLPCF 4
             +K + FPH+MER  ++ S S+LGLI+D VD     +   +   KL CF
Sbjct: 805  DVKVDLFPHYMERNKTFKSTSILGLIFDTVDFHNAEDTTPSGISKLQCF 853