BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00015501
         (225 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containi...   132   4e-29
emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]   132   4e-29
ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containi...   129   3e-28
ref|XP_002316075.1| predicted protein [Populus trichocarpa] gi|2...   128   6e-28
ref|NP_187294.1| pentatricopeptide repeat-containing protein [Ar...   127   7e-28

>ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic [Vitis vinifera]
          Length = 498

 Score =  132 bits (331), Expect = 4e-29
 Identities = 63/74 (85%), Positives = 68/74 (91%)
 Frame = +3

Query: 3   VIEAFADVGDAKNMEYTFDQMRSERMRMDTKTLCCLIRGYGNAGMFHKVVSSVQLAEKLE 182
           VIEAF+DVGDAKNMEYTFDQMR+E M+ DTKT CCLIRGY NAG+FHKVVSSVQLA K E
Sbjct: 362 VIEAFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGLFHKVVSSVQLAGKFE 421

Query: 183 IPENTSFYNAVLSA 224
           IPENTSFYNAV+SA
Sbjct: 422 IPENTSFYNAVISA 435


>emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]
          Length = 525

 Score =  132 bits (331), Expect = 4e-29
 Identities = 63/74 (85%), Positives = 68/74 (91%)
 Frame = +3

Query: 3   VIEAFADVGDAKNMEYTFDQMRSERMRMDTKTLCCLIRGYGNAGMFHKVVSSVQLAEKLE 182
           VIEAF+DVGDAKNMEYTFDQMR+E M+ DTKT CCLIRGY NAG+FHKVVSSVQLA K E
Sbjct: 362 VIEAFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGLFHKVVSSVQLAGKFE 421

Query: 183 IPENTSFYNAVLSA 224
           IPENTSFYNAV+SA
Sbjct: 422 IPENTSFYNAVISA 435


>ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Cucumis sativus]
           gi|449522692|ref|XP_004168360.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Cucumis sativus]
          Length = 496

 Score =  129 bits (323), Expect = 3e-28
 Identities = 61/74 (82%), Positives = 67/74 (90%)
 Frame = +3

Query: 3   VIEAFADVGDAKNMEYTFDQMRSERMRMDTKTLCCLIRGYGNAGMFHKVVSSVQLAEKLE 182
           VIEAFADVGDAKNMEYTF+QMR+E MR DTKT CCLI GY NAG+FHKV+ SV+LA KLE
Sbjct: 360 VIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVIGSVKLAGKLE 419

Query: 183 IPENTSFYNAVLSA 224
           IPENTSFYNAV+SA
Sbjct: 420 IPENTSFYNAVISA 433


>ref|XP_002316075.1| predicted protein [Populus trichocarpa] gi|222865115|gb|EEF02246.1|
           predicted protein [Populus trichocarpa]
          Length = 434

 Score =  128 bits (321), Expect = 6e-28
 Identities = 60/74 (81%), Positives = 66/74 (89%)
 Frame = +3

Query: 3   VIEAFADVGDAKNMEYTFDQMRSERMRMDTKTLCCLIRGYGNAGMFHKVVSSVQLAEKLE 182
           VIEAFADVGDAKNMEY FDQMR+E M+ DTKT CCLI GY NAG+FHKV+SSVQLA K E
Sbjct: 305 VIEAFADVGDAKNMEYAFDQMRAESMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFE 364

Query: 183 IPENTSFYNAVLSA 224
           IPENTSF+NAV+SA
Sbjct: 365 IPENTSFFNAVISA 378


>ref|NP_187294.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75207273|sp|Q9SQU6.1|PP216_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g06430, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2750; Flags: Precursor
           gi|6437546|gb|AAF08573.1|AC011623_6 unknown protein
           [Arabidopsis thaliana] gi|20466300|gb|AAM20467.1|
           unknown protein [Arabidopsis thaliana]
           gi|30387593|gb|AAP31962.1| At3g06430 [Arabidopsis
           thaliana] gi|332640870|gb|AEE74391.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 486

 Score =  127 bits (320), Expect = 7e-28
 Identities = 60/74 (81%), Positives = 66/74 (89%)
 Frame = +3

Query: 3   VIEAFADVGDAKNMEYTFDQMRSERMRMDTKTLCCLIRGYGNAGMFHKVVSSVQLAEKLE 182
           +IEAFADVGDAKNME TFDQMRSE M+ DTKT CCLI GY NAG+FHKV+SSVQLA K E
Sbjct: 342 IIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFE 401

Query: 183 IPENTSFYNAVLSA 224
           IPENT+FYNAV+SA
Sbjct: 402 IPENTAFYNAVISA 415