BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00014912
         (1005 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_174336.1| DNA-damage-repair/toleration protein DRT111 [Ar...   118   2e-24
ref|XP_002890874.1| hypothetical protein ARALYDRAFT_473276 [Arab...   118   2e-24
ref|XP_003529447.1| PREDICTED: DNA-damage-repair/toleration prot...   118   3e-24
ref|XP_003556542.1| PREDICTED: DNA-damage-repair/toleration prot...   115   1e-23
ref|XP_002281743.1| PREDICTED: DNA-damage-repair/toleration prot...   115   2e-23

>ref|NP_174336.1| DNA-damage-repair/toleration protein DRT111 [Arabidopsis thaliana]
           gi|20141383|sp|P42698.2|DR111_ARATH RecName:
           Full=DNA-damage-repair/toleration protein DRT111,
           chloroplastic; Flags: Precursor
           gi|6634771|gb|AAF19751.1|AC009917_10 Strong similarity
           to gi|1169200 DNA-Damage-Repair/Toleration protein
           (DRT111) precurser, and contains a G-patch PF|01585
           domain and RNA recognition PF|00076 motif. EST
           gb|AA395591 comes from this gene [Arabidopsis thaliana]
           gi|15028005|gb|AAK76533.1| putative DNA damage repair
           protein [Arabidopsis thaliana]
           gi|20259641|gb|AAM14338.1| putative DNA damage repair
           protein [Arabidopsis thaliana]
           gi|332193110|gb|AEE31231.1| DNA-damage-repair/toleration
           protein DRT111 [Arabidopsis thaliana]
          Length = 387

 Score =  118 bits (296), Expect = 2e-24
 Identities = 66/104 (63%), Positives = 68/104 (65%)
 Frame = -2

Query: 314 DSRSSSLNISGEDAWKRRAAMXXXXXXXXXXXXXXXXXGDGFSIXXXXXXXXXXXXXGQM 135
           +S  S LNISGE+AWKRRAAM                  DGFSI             GQM
Sbjct: 156 NSDPSRLNISGEEAWKRRAAMSGGGSGGKGRSSSPPGNVDGFSIGKSETSGLGVGAGGQM 215

Query: 134 TAAQRMMAKMGWKAGQGLGKQEQGITTPLMAKKTDRRAGVIVNA 3
           TAAQRMMAKMGWK GQGLGK EQGITTPLMAKKTDRRAGVIVNA
Sbjct: 216 TAAQRMMAKMGWKQGQGLGKSEQGITTPLMAKKTDRRAGVIVNA 259



 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 51/114 (44%), Positives = 58/114 (50%)
 Frame = -2

Query: 827 MLGGLYGDLXXXXXXXXXXXXXXXXXXXSAKMAPPTLRKPSSLFAPPQSVLKTQQQSQIK 648
           MLGGLYGDL                   S KMAPPTLRKP + FAPPQ++L+       K
Sbjct: 1   MLGGLYGDLPPPTDDEKPSGNSSSVWSSSTKMAPPTLRKPPA-FAPPQTILRPLN----K 55

Query: 647 PKNVVSSSPIVVKALXXXXXXXXXXXXXXXXSQPGLVGVTSNVIEEYDPARPND 486
           PK +VS+                         QP LVGVTS+VIEEYDPARPND
Sbjct: 56  PKPIVSAPYKPPPPSNSSQSVLIPANESAPSHQPALVGVTSSVIEEYDPARPND 109


>ref|XP_002890874.1| hypothetical protein ARALYDRAFT_473276 [Arabidopsis lyrata subsp.
           lyrata] gi|297336716|gb|EFH67133.1| hypothetical protein
           ARALYDRAFT_473276 [Arabidopsis lyrata subsp. lyrata]
          Length = 385

 Score =  118 bits (296), Expect = 2e-24
 Identities = 66/104 (63%), Positives = 68/104 (65%)
 Frame = -2

Query: 314 DSRSSSLNISGEDAWKRRAAMXXXXXXXXXXXXXXXXXGDGFSIXXXXXXXXXXXXXGQM 135
           +S  S LNISGE+AWKRRAAM                  DGFSI             GQM
Sbjct: 155 NSDPSRLNISGEEAWKRRAAMSGGGSGGKRRSSSPPGNVDGFSIGKSETSGLGVGAGGQM 214

Query: 134 TAAQRMMAKMGWKAGQGLGKQEQGITTPLMAKKTDRRAGVIVNA 3
           TAAQRMMAKMGWK GQGLGK EQGITTPLMAKKTDRRAGVIVNA
Sbjct: 215 TAAQRMMAKMGWKQGQGLGKSEQGITTPLMAKKTDRRAGVIVNA 258



 Score = 70.9 bits (172), Expect = 5e-10
 Identities = 50/116 (43%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
 Frame = -2

Query: 827 MLGGLYGDLXXXXXXXXXXXXXXXXXXXSAKMAPPTLRKPSSLFAPPQSVLKTQQQSQIK 648
           MLGGLYGDL                   S KMAPPTLRKP + FAPPQ++L+ Q     K
Sbjct: 1   MLGGLYGDLPPPSDDEKPSGNSSSVWSSSTKMAPPTLRKPPA-FAPPQTILRPQN----K 55

Query: 647 PKNVVSSS--PIVVKALXXXXXXXXXXXXXXXXSQPGLVGVTSNVIEEYDPARPND 486
           PK +VSS   P    +                  QP LV   ++VIEEYDPARPND
Sbjct: 56  PKPIVSSQYKPPPPSSTNSSQSVLTPANESAPSHQPALV---ASVIEEYDPARPND 108


>ref|XP_003529447.1| PREDICTED: DNA-damage-repair/toleration protein DRT111,
           chloroplastic-like [Glycine max]
          Length = 384

 Score =  118 bits (295), Expect = 3e-24
 Identities = 68/106 (64%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
 Frame = -2

Query: 314 DSRSSSLNISGEDAWKRRAAMXXXXXXXXXXXXXXXXXG--DGFSIXXXXXXXXXXXXXG 141
           DS SS LN+SGE+AW+RRAAM                 G  DGFSI             G
Sbjct: 153 DSSSSRLNVSGEEAWRRRAAMSGAAAGAPPRSPSPPLPGNSDGFSIGKSETGGLGVGAGG 212

Query: 140 QMTAAQRMMAKMGWKAGQGLGKQEQGITTPLMAKKTDRRAGVIVNA 3
           QMTAAQRMMAKMGWK GQGLGKQEQGITTPLMAKKTDRRAGVIVNA
Sbjct: 213 QMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNA 258



 Score = 79.7 bits (195), Expect = 1e-12
 Identities = 49/114 (42%), Positives = 59/114 (51%)
 Frame = -2

Query: 827 MLGGLYGDLXXXXXXXXXXXXXXXXXXXSAKMAPPTLRKPSSLFAPPQSVLKTQQQSQIK 648
           MLGGLYGDL                   S KMAP TLRKP+SLFAPPQ++L+   + +  
Sbjct: 1   MLGGLYGDLPPPSSAEEDNKPTPNVWSSSTKMAPATLRKPASLFAPPQTLLRAHPKPKPT 60

Query: 647 PKNVVSSSPIVVKALXXXXXXXXXXXXXXXXSQPGLVGVTSNVIEEYDPARPND 486
            K V+SS+   +                    QP LVGV S V+EEYDPARPND
Sbjct: 61  AKPVLSSTTPAL-------------PPEDSPLQPALVGVQSTVLEEYDPARPND 101


>ref|XP_003556542.1| PREDICTED: DNA-damage-repair/toleration protein DRT111,
           chloroplastic-like [Glycine max]
          Length = 392

 Score =  115 bits (289), Expect = 1e-23
 Identities = 66/109 (60%), Positives = 70/109 (64%), Gaps = 5/109 (4%)
 Frame = -2

Query: 314 DSRSSSLNISGEDAWKRRAAMXXXXXXXXXXXXXXXXXG-----DGFSIXXXXXXXXXXX 150
           DS SS LN+SGE+AW+RRAAM                       DGF+I           
Sbjct: 156 DSSSSRLNVSGEEAWRRRAAMSGAGSGSGAVLVPRSPSPPPGNVDGFTIGKSETGGLGVG 215

Query: 149 XXGQMTAAQRMMAKMGWKAGQGLGKQEQGITTPLMAKKTDRRAGVIVNA 3
             GQMTAAQRMMAKMGWK GQGLGKQEQGITTPLMAKKTDRRAGVIVNA
Sbjct: 216 AGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNA 264



 Score = 80.9 bits (198), Expect = 5e-13
 Identities = 51/118 (43%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
 Frame = -2

Query: 827 MLGGLYGDLXXXXXXXXXXXXXXXXXXXSAKMAPPTLRKPSSLFAPPQSVLKTQQQ---- 660
           MLGGLYGDL                   S KMAP TLRKP+SLFAPPQ++L+ Q +    
Sbjct: 1   MLGGLYGDLPPPSSAEEDNKPTPNVWSSSTKMAPATLRKPASLFAPPQTLLRAQPKPRPT 60

Query: 659 SQIKPKNVVSSSPIVVKALXXXXXXXXXXXXXXXXSQPGLVGVTSNVIEEYDPARPND 486
           +   PK ++SSSP                       QP LVGV S V+EEYDP RPND
Sbjct: 61  TTTIPKPILSSSP--------------APPPDDALLQPALVGVQSTVLEEYDPTRPND 104


>ref|XP_002281743.1| PREDICTED: DNA-damage-repair/toleration protein DRT111,
           chloroplastic [Vitis vinifera]
          Length = 383

 Score =  115 bits (287), Expect = 2e-23
 Identities = 67/107 (62%), Positives = 71/107 (66%)
 Frame = -2

Query: 323 DYKDSRSSSLNISGEDAWKRRAAMXXXXXXXXXXXXXXXXXGDGFSIXXXXXXXXXXXXX 144
           +Y DSR   LNISGE+AW+RRAAM                  DGF+I             
Sbjct: 159 EYGDSR---LNISGEEAWRRRAAMSGAVPRSPSPPTSG----DGFTIGKSETVGLGVGAG 211

Query: 143 GQMTAAQRMMAKMGWKAGQGLGKQEQGITTPLMAKKTDRRAGVIVNA 3
           GQMTAAQRMMAKMGWK GQGLGKQEQGITTPLMAKKTDRRAGVIVNA
Sbjct: 212 GQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNA 258



 Score = 99.0 bits (245), Expect = 2e-18
 Identities = 58/114 (50%), Positives = 65/114 (57%)
 Frame = -2

Query: 827 MLGGLYGDLXXXXXXXXXXXXXXXXXXXSAKMAPPTLRKPSSLFAPPQSVLKTQQQSQIK 648
           MLGGLYGDL                   SAKMAP  LRKPSS+FAPPQSVLKT Q +Q K
Sbjct: 1   MLGGLYGDLPPPSSADEDKPTNSSVWSSSAKMAPAALRKPSSVFAPPQSVLKT-QHAQAK 59

Query: 647 PKNVVSSSPIVVKALXXXXXXXXXXXXXXXXSQPGLVGVTSNVIEEYDPARPND 486
           PK + SS  ++   L                 QP LVGVTS+V+EEYDPARPND
Sbjct: 60  PKTLNSSKILISPGLAPSPSVLPNEGARSPSFQPALVGVTSSVVEEYDPARPND 113