BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00014865
         (1156 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containi...   500   e-139
emb|CBI17575.3| unnamed protein product [Vitis vinifera]              494   e-137
ref|XP_003631109.1| Pentatricopeptide repeat-containing protein ...   475   e-131
ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containi...   469   e-130
ref|XP_003532540.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   436   e-120

>ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01390-like
            [Vitis vinifera]
          Length = 519

 Score =  500 bits (1287), Expect = e-139
 Identities = 243/390 (62%), Positives = 307/390 (78%), Gaps = 6/390 (1%)
 Frame = +2

Query: 5    MRNTIGMISNILRYSTWDSAQEQLDKLSIKWDSYTINQVLKTHPPMEKAWLFFNWASRLR 184
            MR+TIG IS ILRY TWDSAQEQL+KLSI+WDSYT+NQVLK+HPPMEKAWLFFNWASRL+
Sbjct: 1    MRDTIGNISKILRYLTWDSAQEQLEKLSIRWDSYTVNQVLKSHPPMEKAWLFFNWASRLK 60

Query: 185  GFKHDQYTYTTMLDIFGEAGRISSMKLVFQQMQEKGIIVDAVTYTALLHWLSKSGDLEGS 364
            GFKHDQ+TYTTMLDIFGEA RI SM  VFQQMQEKGI  DAVTYT+L+HW S  GD+E +
Sbjct: 61   GFKHDQFTYTTMLDIFGEARRIESMNYVFQQMQEKGIKTDAVTYTSLMHWFSNDGDIERA 120

Query: 365  LEMWEEMKVKECSPTVVTYTAVMKVLFDNNRAKDATEVYKEMLESGCSPNCYTYTVLMEY 544
            + +W+EMK K C  TVV+YTA MK+LFDN R K+A +VYKEML+SGC+PNCYTYTVLME+
Sbjct: 121  VRVWKEMKAKGCCLTVVSYTAYMKILFDNKRVKEAADVYKEMLQSGCAPNCYTYTVLMEH 180

Query: 545  LISTGRFKEALEIMSKMQEAGVQPDKATCNILVQKFSRTGEIWAVNHILKYMKEHKLVLR 724
            L  +G++K ALEI S+MQEAGVQPDKATCNIL++KF +TG+ WA+  IL YMK++ LVLR
Sbjct: 181  LTGSGKYKAALEIFSRMQEAGVQPDKATCNILIEKFCKTGQTWAITQILLYMKDNFLVLR 240

Query: 725  HPVYVQALQALKVAGESNELLKEANRHLSL------EGTDAEEVTADFHSTVDTAIVKNL 886
            +PVY++ALQ LKVAGES+ LL++ N HL++      E  + +E  AD HST+D   V   
Sbjct: 241  YPVYLEALQTLKVAGESDILLRQVNPHLNVGLSSKEEIVEFKETVADVHSTIDRGFVLLF 300

Query: 887  LAKRNFIAVEHIIDGMISTNIQVSSKLISAIIQSSCVNNRPTCAVSAYNYGIKMGICIER 1066
            L K+NF A++ ++ GMI  N ++ S +IS II+ +C + R   A+ A+ Y +KMGI IER
Sbjct: 301  LTKQNFYAIDCLLTGMIHKNTRLDSVIISQIIEVNCAHCRINGALLAFEYSVKMGINIER 360

Query: 1067 RACLSLIGFMIRSNLFSELVEIVENMVGSG 1156
             A L+L+G  IR+N F ++ +IVE MV +G
Sbjct: 361  IAYLALMGVFIRANSFPKVADIVEKMVRAG 390


>emb|CBI17575.3| unnamed protein product [Vitis vinifera]
          Length = 656

 Score =  494 bits (1272), Expect = e-137
 Identities = 244/402 (60%), Positives = 308/402 (76%), Gaps = 17/402 (4%)
 Frame = +2

Query: 2    YMRNTIGMISNILRYSTWDSAQEQLDKLSIKWDSYTINQVLKTHPPMEKAWLFFNWASRL 181
            YMR+TIG IS ILRY TWDSAQEQL+KLSI+WDSYT+NQVLK+HPPMEKAWLFFNWASRL
Sbjct: 126  YMRDTIGNISKILRYLTWDSAQEQLEKLSIRWDSYTVNQVLKSHPPMEKAWLFFNWASRL 185

Query: 182  RGFKHDQYTYTTMLDIFGEAGRISSMKLVFQQMQEKGIIVDAVTYTALLHWLSKSGDLEG 361
            +GFKHDQ+TYTTMLDIFGEA RI SM  VFQQMQEKGI  DAVTYT+L+HW S  GD+E 
Sbjct: 186  KGFKHDQFTYTTMLDIFGEARRIESMNYVFQQMQEKGIKTDAVTYTSLMHWFSNDGDIER 245

Query: 362  SLEMWEEMKVKECSPTVVTYTAVMKVLFDNNRAKDATEVYKEMLESGCSPNCYTYTVLME 541
            ++ +W+EMK K C  TVV+YTA MK+LFDN R K+A +VYKEML+SGC+PNCYTYTVLME
Sbjct: 246  AVRVWKEMKAKGCCLTVVSYTAYMKILFDNKRVKEAADVYKEMLQSGCAPNCYTYTVLME 305

Query: 542  YLISTG-----------RFKEALEIMSKMQEAGVQPDKATCNILVQKFSRTGEIWAVNHI 688
            +L  +G           ++K ALEI S+MQEAGVQPDKATCNIL++KF +TG+ WA+  I
Sbjct: 306  HLTGSGKHLLQFSCIACKYKAALEIFSRMQEAGVQPDKATCNILIEKFCKTGQTWAITQI 365

Query: 689  LKYMKEHKLVLRHPVYVQALQALKVAGESNELLKEANRHLSL------EGTDAEEVTADF 850
            L YMK++ LVLR+PVY++ALQ LKVAGES+ LL++ N HL++      E  + +E  AD 
Sbjct: 366  LLYMKDNFLVLRYPVYLEALQTLKVAGESDILLRQVNPHLNVGLSSKEEIVEFKETVADV 425

Query: 851  HSTVDTAIVKNLLAKRNFIAVEHIIDGMISTNIQVSSKLISAIIQSSCVNNRPTCAVSAY 1030
            HST+D   V   L K+NF A++ ++ GMI  N ++ S +IS II+ +C + R   A+ A+
Sbjct: 426  HSTIDRGFVLLFLTKQNFYAIDCLLTGMIHKNTRLDSVIISQIIEVNCAHCRINGALLAF 485

Query: 1031 NYGIKMGICIERRACLSLIGFMIRSNLFSELVEIVENMVGSG 1156
             Y +KMGI IER A L+L+G  IR+N F ++ +IVE MV +G
Sbjct: 486  EYSVKMGINIERIAYLALMGVFIRANSFPKVADIVEKMVRAG 527


>ref|XP_003631109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355525131|gb|AET05585.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 687

 Score =  475 bits (1222), Expect = e-131
 Identities = 232/392 (59%), Positives = 301/392 (76%), Gaps = 7/392 (1%)
 Frame = +2

Query: 2    YMRNTIGMISNILRYSTWDSAQEQLDKLSIKWDSYTINQVLKTHPPMEKAWLFFNWASRL 181
            YMRN IG I   L+YS+WDSAQ+QL  L +KWDSYT+NQVLK+HPPMEKAWLFFNWASRL
Sbjct: 167  YMRNVIGNIYRTLKYSSWDSAQQQLQNLPLKWDSYTVNQVLKSHPPMEKAWLFFNWASRL 226

Query: 182  RGFKHDQYTYTTMLDIFGEAGRISSMKLVFQQMQEKGIIVDAVTYTALLHWLSKSGDLEG 361
            +GFKHDQ+TYTTMLDIFGEAGRISSMK VF QM EKGI +D+VTYT+++HWLS SG+++ 
Sbjct: 227  KGFKHDQFTYTTMLDIFGEAGRISSMKHVFNQMHEKGIKIDSVTYTSMMHWLSTSGNVDE 286

Query: 362  SLEMWEEMKVKECS-PTVVTYTAVMKVLFDNNRAKDATEVYKEMLESGCSPNCYTYTVLM 538
            ++ +W+EMK K C  PTVV+YTA +K+LFDN+R K+AT +YKEML +GC PNCYTYTVLM
Sbjct: 287  AIALWDEMKSKGCCYPTVVSYTAFIKILFDNHRVKEATAIYKEMLHNGCVPNCYTYTVLM 346

Query: 539  EYLISTGRFKEALEIMSKMQEAGVQPDKATCNILVQKFSRTGEIWAVNHILKYMKEHKLV 718
            ++LI++G+ KEALEI  KMQEAGV+PDKA CNIL+ K S+      +  IL+YMKE++LV
Sbjct: 347  DHLIASGKCKEALEIFQKMQEAGVEPDKAACNILIDKCSKVCGTVFMTKILQYMKENRLV 406

Query: 719  LRHPVYVQALQALKVAGESNELLKEANRHLSLEGT------DAEEVTADFHSTVDTAIVK 880
            LR+ VYV+A++ALK+AGES+ LL++ N H  L+ +      D   V AD  S +D  ++ 
Sbjct: 407  LRYRVYVKAMEALKIAGESDTLLRQVNPHFYLDSSFKEKAHDRNTVIADSSSNIDKELLL 466

Query: 881  NLLAKRNFIAVEHIIDGMISTNIQVSSKLISAIIQSSCVNNRPTCAVSAYNYGIKMGICI 1060
             LL  RN +A++H+I GM+   I V +K+IS II+ +C   RP  A+ A+NY + MGI I
Sbjct: 467  VLLRNRNVVAIDHLIQGMMDKKISVDNKVISTIIEVNCNCCRPDGALLAFNYSVTMGISI 526

Query: 1061 ERRACLSLIGFMIRSNLFSELVEIVENMVGSG 1156
            ER   LSL+G + RSN+FS+LVEIV  M  +G
Sbjct: 527  ERTGYLSLVGLLNRSNMFSKLVEIVGEMTRAG 558


>ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01390-like
            [Glycine max]
          Length = 585

 Score =  469 bits (1206), Expect = e-130
 Identities = 222/391 (56%), Positives = 300/391 (76%), Gaps = 6/391 (1%)
 Frame = +2

Query: 2    YMRNTIGMISNILRYSTWDSAQEQLDKLSIKWDSYTINQVLKTHPPMEKAWLFFNWASRL 181
            YMRN IG I N+L+YS+W+SA++ L+ LS+KWDSYT+NQVLK+HPPMEKAWLFFNW S L
Sbjct: 64   YMRNVIGKIYNMLKYSSWESAEQDLNNLSMKWDSYTVNQVLKSHPPMEKAWLFFNWVSSL 123

Query: 182  RGFKHDQYTYTTMLDIFGEAGRISSMKLVFQQMQEKGIIVDAVTYTALLHWLSKSGDLEG 361
            RGFKHD YTYTTMLDIFGEAGR+SSMK +FQQMQEKGI +D+VTYT+++HWLS SG+ + 
Sbjct: 124  RGFKHDHYTYTTMLDIFGEAGRVSSMKHLFQQMQEKGIKLDSVTYTSMMHWLSSSGNFDE 183

Query: 362  SLEMWEEMKVKECSPTVVTYTAVMKVLFDNNRAKDATEVYKEMLESGCSPNCYTYTVLME 541
            +++MW++MK K   PTVV+YTA +K+LF N R K+AT  YKEM+ S  +PNC+TYTVLM+
Sbjct: 184  AMQMWDQMKSKGFHPTVVSYTAYIKILFHNQRVKEATRAYKEMISSRVAPNCHTYTVLMD 243

Query: 542  YLISTGRFKEALEIMSKMQEAGVQPDKATCNILVQKFSRTGEIWAVNHILKYMKEHKLVL 721
            YLI +G++KEALEI  KMQEAG QPDKA CNIL+++ S+ G    + HIL+YMKE++LVL
Sbjct: 244  YLIGSGQYKEALEIFEKMQEAGAQPDKAACNILIERCSKVGGTEFMTHILQYMKENRLVL 303

Query: 722  RHPVYVQALQALKVAGESNELLKEANRHLSLE------GTDAEEVTADFHSTVDTAIVKN 883
            R+PV+V+AL+ALK+AGES+ LL++ N    ++       ++   V AD  + +D  ++  
Sbjct: 304  RYPVFVKALEALKIAGESDTLLRQVNPQFYMDCIIRKKASNTITVAADCPTNIDKELLFV 363

Query: 884  LLAKRNFIAVEHIIDGMISTNIQVSSKLISAIIQSSCVNNRPTCAVSAYNYGIKMGICIE 1063
            LL  RN +A++H++ GM+   I +  K++S II+ +C + RP  A+ A+ Y + MGI IE
Sbjct: 364  LLKNRNVVAIDHLLTGMMDKKISLDHKVVSTIIEVNCSHCRPEGALLAFKYSVTMGISIE 423

Query: 1064 RRACLSLIGFMIRSNLFSELVEIVENMVGSG 1156
            R   LSLIG +IRSN+FS+L EIVE M  +G
Sbjct: 424  RTGYLSLIGLLIRSNMFSKLAEIVEKMTRAG 454


>ref|XP_003532540.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At2g01390-like [Glycine max]
          Length = 545

 Score =  436 bits (1120), Expect = e-120
 Identities = 211/391 (53%), Positives = 292/391 (74%), Gaps = 6/391 (1%)
 Frame = +2

Query: 2    YMRNTIGMISNILRYSTWDSAQEQLDKLSIKWDSYTINQVLKTHPPMEKAWLFFNWASRL 181
            YMRN IG I   L+YS+W+SA+++L+ +S++WDSYT+NQVLK+HPPMEKAWLFFNWAS L
Sbjct: 40   YMRNVIGKIYKTLKYSSWESAEQELNNMSLRWDSYTVNQVLKSHPPMEKAWLFFNWASSL 99

Query: 182  RGFKHDQYTYTTMLDIFGEAGRISSMKLVFQQMQEKGIIVDAVTYTALLHWLSKSGDLEG 361
            RGFKHD YTYTTMLDIFGEAGR+SS+KL            D+VTYT+++HWLS SG+++ 
Sbjct: 100  RGFKHDHYTYTTMLDIFGEAGRVSSIKL------------DSVTYTSMMHWLSSSGNVDQ 147

Query: 362  SLEMWEEMKVKECSPTVVTYTAVMKVLFDNNRAKDATEVYKEMLESGCSPNCYTYTVLME 541
            +++MW ++K K    TVV+YTA +K+LF N R K+AT VYKEM+ SG +PNC+TYTVLM+
Sbjct: 148  AMQMWHQIKSK----TVVSYTAYIKILFHNRRLKEATRVYKEMISSGVAPNCHTYTVLMD 203

Query: 542  YLISTGRFKEALEIMSKMQEAGVQPDKATCNILVQKFSRTGEIWAVNHILKYMKEHKLVL 721
            YLI++G+ KEALEI  KMQEAG QPDKA CNIL+Q+ S+ G    + HIL+YMKE++LVL
Sbjct: 204  YLIASGKCKEALEIFEKMQEAGAQPDKAACNILIQRCSKVGGTEFMTHILQYMKENRLVL 263

Query: 722  RHPVYVQALQALKVAGESNELLKEANRHLSL------EGTDAEEVTADFHSTVDTAIVKN 883
            R+PV+V+AL+ALK +GE++ LL++ N    +      + +++  V AD  + +D  ++  
Sbjct: 264  RYPVFVEALEALKXSGETDTLLRQVNPQFYMDCSTRKDASNSITVAADCPTNIDNELLFV 323

Query: 884  LLAKRNFIAVEHIIDGMISTNIQVSSKLISAIIQSSCVNNRPTCAVSAYNYGIKMGICIE 1063
            LL  RN +A++H++ GM+   I +  K++S II+ +C + RP  A+ A+ Y + MGI IE
Sbjct: 324  LLKNRNVVAIDHLLTGMMDKKIYLEHKVVSTIIEVNCSHCRPKGALLAFKYSVTMGISIE 383

Query: 1064 RRACLSLIGFMIRSNLFSELVEIVENMVGSG 1156
            R   LSLIG +IRSN+FS+LVEIVE M  +G
Sbjct: 384  RTGYLSLIGLLIRSNMFSKLVEIVEEMTRAG 414