BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00014851
         (308 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containi...   137   7e-31
ref|XP_002511573.1| pentatricopeptide repeat-containing protein,...   118   4e-25
ref|XP_003576524.1| PREDICTED: pentatricopeptide repeat-containi...    93   2e-17
ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arab...    91   1e-16
gb|EAZ09087.1| hypothetical protein OsI_31353 [Oryza sativa Indi...    91   1e-16

>ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
           gi|297733984|emb|CBI15231.3| unnamed protein product
           [Vitis vinifera]
          Length = 893

 Score =  137 bits (346), Expect = 7e-31
 Identities = 65/100 (65%), Positives = 78/100 (78%)
 Frame = -3

Query: 306 YSYGYVRTGMIHLFMKSFCFEEGLRLFSDVLCENVVCWNAIISGAVRNRENFVALEVFSQ 127
           +S GYVR GMI LF K   FE+ LR+F DVLCENVVCWNAIISGAV+NREN+VAL++F Q
Sbjct: 179 FSNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQ 238

Query: 126 MLRGNLMPNNHTYPSVLSACTALGELELGKQVHGWVLKCG 7
           M     MPN+ T+ S+L+AC AL ELE G+ V GWV+KCG
Sbjct: 239 MCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCG 278



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 32/96 (33%), Positives = 51/96 (53%)
 Frame = -3

Query: 294 YVRTGMIHLFMKSFCFEEGLRLFSDVLCENVVCWNAIISGAVRNRENFVALEVFSQMLRG 115
           +V T +I L+ K    ++ ++ F  +   NVV W  IISG V+  ++  A   F +M + 
Sbjct: 284 FVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKV 343

Query: 114 NLMPNNHTYPSVLSACTALGELELGKQVHGWVLKCG 7
               NN+T  SVL+ACT    ++   Q+H W+ K G
Sbjct: 344 GEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTG 379



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 35/96 (36%), Positives = 47/96 (48%)
 Frame = -3

Query: 294 YVRTGMIHLFMKSFCFEEGLRLFSDVLCENVVCWNAIISGAVRNRENFVALEVFSQMLRG 115
           ++   ++  + KS      LRLF      NV+ WN +ISG  +N     +   F +M   
Sbjct: 82  FMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFSFEDSWRNFCKMRFS 141

Query: 114 NLMPNNHTYPSVLSACTALGELELGKQVHGWVLKCG 7
              PN  TY SVLSACTALG    G+ V+   LK G
Sbjct: 142 GFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNG 177



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 28/93 (30%), Positives = 52/93 (55%)
 Frame = -3

Query: 291 VRTGMIHLFMKSFCFEEGLRLFSDVLCENVVCWNAIISGAVRNRENFVALEVFSQMLRGN 112
           V + +  ++ K    EE   +F  +  ++ V W ++I+G   +     A+++F +ML   
Sbjct: 485 VGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEE 544

Query: 111 LMPNNHTYPSVLSACTALGELELGKQVHGWVLK 13
           + P+  T  + L+AC+AL  LE GK+VHG+ L+
Sbjct: 545 IRPDQMTLTAALTACSALHSLEKGKEVHGYALR 577


>ref|XP_002511573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550688|gb|EEF52175.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 954

 Score =  118 bits (296), Expect = 4e-25
 Identities = 54/99 (54%), Positives = 76/99 (76%)
 Frame = -3

Query: 306 YSYGYVRTGMIHLFMKSFCFEEGLRLFSDVLCENVVCWNAIISGAVRNRENFVALEVFSQ 127
           YS G+VR GMI L  ++  F + LR+F DV CENVVCWN+IISGAV++ E ++AL++F Q
Sbjct: 183 YSNGHVRAGMIDLLARNGRFGDALRVFYDVSCENVVCWNSIISGAVKSGEYWIALDIFYQ 242

Query: 126 MLRGNLMPNNHTYPSVLSACTALGELELGKQVHGWVLKC 10
           M R  ++PN+ T+ S+L+AC +L E+ELGK + GWV+KC
Sbjct: 243 MSRRFVVPNSFTFSSILTACASLEEVELGKGIQGWVIKC 281



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 29/96 (30%), Positives = 53/96 (55%)
 Frame = -3

Query: 294 YVRTGMIHLFMKSFCFEEGLRLFSDVLCENVVCWNAIISGAVRNRENFVALEVFSQMLRG 115
           +V T +++++ K     + ++ FS +   NVV W AI+SG ++  ++  AL+ F +M + 
Sbjct: 287 FVGTAIVNMYAKCGDIVDAVKEFSRMPVRNVVSWTAIVSGFIKRDDSISALKFFKEMRKM 346

Query: 114 NLMPNNHTYPSVLSACTALGELELGKQVHGWVLKCG 7
               N  T  +V+SAC     ++   Q+H W+LK G
Sbjct: 347 KEETNKFTVTTVISACAKPHFIKEAIQIHCWILKTG 382



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 35/95 (36%), Positives = 47/95 (49%)
 Frame = -3

Query: 291 VRTGMIHLFMKSFCFEEGLRLFSDVLCENVVCWNAIISGAVRNRENFVALEVFSQMLRGN 112
           V   ++  + KS      L++F  +  +NV+ WN IISG  RN     +   FS M    
Sbjct: 87  VANSLLDWYCKSGALFYALKVFDTIPNKNVISWNVIISGYNRNSLFEDSWRFFSMMHFSG 146

Query: 111 LMPNNHTYPSVLSACTALGELELGKQVHGWVLKCG 7
             PN+ TY  VLSAC AL    LG+QV+    K G
Sbjct: 147 FDPNDITYGCVLSACAALETPNLGEQVYSLATKNG 181


>ref|XP_003576524.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic-like [Brachypodium distachyon]
          Length = 809

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 47/94 (50%), Positives = 64/94 (68%)
 Frame = -3

Query: 294 YVRTGMIHLFMKSFCFEEGLRLFSDVLCENVVCWNAIISGAVRNRENFVALEVFSQMLRG 115
           YV +GMI L  KS  FE+ L+ F D    + VCWN +ISGAVRN ++ +A+++FS M+RG
Sbjct: 105 YVCSGMIDLLAKSGRFEDALKAFEDGDRGSAVCWNTVISGAVRNDQDRLAIDMFSDMVRG 164

Query: 114 NLMPNNHTYPSVLSACTALGELELGKQVHGWVLK 13
           +  PN+ TY  VLSAC    EL +G+ VHG VL+
Sbjct: 165 SCEPNSFTYSGVLSACAMGAELCVGRAVHGLVLR 198


>ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata] gi|297334827|gb|EFH65245.1| hypothetical protein
           ARALYDRAFT_476599 [Arabidopsis lyrata subsp. lyrata]
          Length = 717

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 42/102 (41%), Positives = 63/102 (61%)
 Frame = -3

Query: 306 YSYGYVRTGMIHLFMKSFCFEEGLRLFSDVLCENVVCWNAIISGAVRNRENFVALEVFSQ 127
           + Y  V++ +I  F K+  FE+  ++F D L  NV CWN II+GA+RN+      ++F +
Sbjct: 4   FFYEVVQSSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHE 63

Query: 126 MLRGNLMPNNHTYPSVLSACTALGELELGKQVHGWVLKCGLQ 1
           M  G   P+++TY SVL+AC +L EL  GK V   V+KCG +
Sbjct: 64  MCNGFQKPDSYTYSSVLAACASLEELRFGKVVQARVIKCGAE 105



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 32/96 (33%), Positives = 50/96 (52%)
 Frame = -3

Query: 294 YVRTGMIHLFMKSFCFEEGLRLFSDVLCENVVCWNAIISGAVRNRENFVALEVFSQMLRG 115
           +V T ++ L+ K     E   +FS +   +VV W  ++SG  ++ + F ALE+F +M   
Sbjct: 108 FVCTSIVDLYAKCGHMAEAREVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHS 167

Query: 114 NLMPNNHTYPSVLSACTALGELELGKQVHGWVLKCG 7
            +  N+ T  SV+SAC     +    QVH WV K G
Sbjct: 168 GVEINSCTVTSVISACGRPSMVCEASQVHAWVFKSG 203



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 28/96 (29%), Positives = 51/96 (53%)
 Frame = -3

Query: 291 VRTGMIHLFMKSFCFEEGLRLFSDVLCENVVCWNAIISGAVRNRENFVALEVFSQMLRGN 112
           V + +  ++ K    EE   LF ++  ++  CW ++ISG         A+ +FS+ML   
Sbjct: 309 VGSSLFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDEG 368

Query: 111 LMPNNHTYPSVLSACTALGELELGKQVHGWVLKCGL 4
             P+  T  +VL+ C++L  L   K++HG+ L+ G+
Sbjct: 369 TSPDESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGI 404


>gb|EAZ09087.1| hypothetical protein OsI_31353 [Oryza sativa Indica Group]
          Length = 810

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 46/94 (48%), Positives = 61/94 (64%)
 Frame = -3

Query: 294 YVRTGMIHLFMKSFCFEEGLRLFSDVLCENVVCWNAIISGAVRNRENFVALEVFSQMLRG 115
           YV TGM+ L  KS    + LR+F+D    + VCWNA +SGAVRN E  +A+E+F  M+ G
Sbjct: 105 YVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMVWG 164

Query: 114 NLMPNNHTYPSVLSACTALGELELGKQVHGWVLK 13
           +  PN+ TY   LSAC A  EL +G+ VHG VL+
Sbjct: 165 SCEPNSFTYSGALSACAAGEELSVGRAVHGLVLR 198