BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00014846
         (489 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002339506.1| predicted protein [Populus trichocarpa] gi|2...    60   3e-14
ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I sub...    57   1e-13
emb|CBI35920.3| unnamed protein product [Vitis vinifera]               57   1e-13
ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypep...    62   8e-13
ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I sub...    63   1e-10

>ref|XP_002339506.1| predicted protein [Populus trichocarpa] gi|222839699|gb|EEE78022.1|
           predicted protein [Populus trichocarpa]
          Length = 472

 Score = 60.5 bits (145), Expect(2) = 3e-14
 Identities = 26/44 (59%), Positives = 37/44 (84%)
 Frame = -3

Query: 484 INKKALETTDGNLSRNIPPHDTNADTPERAYPVD*IILSREWDY 353
           INK ALE+T G+ +RNIPP++++A TP+ AYP+D IIL+ EWD+
Sbjct: 260 INKDALESTSGHSARNIPPYNSSAITPQEAYPLDGIILTGEWDF 303



 Score = 42.7 bits (99), Expect(2) = 3e-14
 Identities = 17/31 (54%), Positives = 26/31 (83%)
 Frame = -1

Query: 354 ILELMQSGAKISSDAYPSFVCNRIHKLMEIE 262
           I +++Q G +++S+AYP+FVCNRI KL EI+
Sbjct: 307 IYKILQVGGEVASNAYPTFVCNRIQKLREIQ 337


>ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Vitis
           vinifera]
          Length = 421

 Score = 56.6 bits (135), Expect(2) = 1e-13
 Identities = 25/44 (56%), Positives = 32/44 (72%)
 Frame = -3

Query: 484 INKKALETTDGNLSRNIPPHDTNADTPERAYPVD*IILSREWDY 353
           INK+ALE+T  + +RNIPP+D  A TP+ AY +D II   EWDY
Sbjct: 209 INKEALESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDY 252



 Score = 44.7 bits (104), Expect(2) = 1e-13
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = -1

Query: 354 ILELMQSGAKISSDAYPSFVCNRIHKLMEIE 262
           IL+L+Q+G ++ S AY SFVCNRI KL E+E
Sbjct: 256 ILDLLQAGVEVESSAYSSFVCNRIQKLKELE 286


>emb|CBI35920.3| unnamed protein product [Vitis vinifera]
          Length = 391

 Score = 56.6 bits (135), Expect(2) = 1e-13
 Identities = 25/44 (56%), Positives = 32/44 (72%)
 Frame = -3

Query: 484 INKKALETTDGNLSRNIPPHDTNADTPERAYPVD*IILSREWDY 353
           INK+ALE+T  + +RNIPP+D  A TP+ AY +D II   EWDY
Sbjct: 179 INKEALESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDY 222



 Score = 44.7 bits (104), Expect(2) = 1e-13
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = -1

Query: 354 ILELMQSGAKISSDAYPSFVCNRIHKLMEIE 262
           IL+L+Q+G ++ S AY SFVCNRI KL E+E
Sbjct: 226 ILDLLQAGVEVESSAYSSFVCNRIQKLKELE 256


>ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus
           communis] gi|223539445|gb|EEF41035.1| DNA-directed RNA
           polymerase I 49 kDa polypeptide, putative [Ricinus
           communis]
          Length = 481

 Score = 61.6 bits (148), Expect(2) = 8e-13
 Identities = 26/44 (59%), Positives = 35/44 (79%)
 Frame = -3

Query: 484 INKKALETTDGNLSRNIPPHDTNADTPERAYPVD*IILSREWDY 353
           +NK ALE T  +++RNIPPH+T+A TP+ AYP+  IIL+ EWDY
Sbjct: 269 VNKAALEDTSAHVARNIPPHNTSATTPQEAYPLGRIILTGEWDY 312



 Score = 36.6 bits (83), Expect(2) = 8e-13
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = -1

Query: 354 ILELMQSGAKISSDAYPSFVCNRIHKLMEIE 262
           + E++Q+G   + +AYP FV NRIHKL EI+
Sbjct: 316 LYEILQAGEGAAINAYPVFVRNRIHKLREIQ 346


>ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like
           [Glycine max]
          Length = 424

 Score = 62.8 bits (151), Expect(2) = 1e-10
 Identities = 27/44 (61%), Positives = 36/44 (81%)
 Frame = -3

Query: 484 INKKALETTDGNLSRNIPPHDTNADTPERAYPVD*IILSREWDY 353
           +NKKALE+T+ ++SRNIPP+D +A TP+ AY +D IIL  EWDY
Sbjct: 212 VNKKALESTESHVSRNIPPYDASATTPQEAYILDKIILKGEWDY 255



 Score = 28.1 bits (61), Expect(2) = 1e-10
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 342 MQSGAKISSDAYPSFVCNRIHKLMEIE 262
           +Q G +    AYP+FV NRI +L +I+
Sbjct: 263 LQRGEEADFSAYPTFVRNRIERLRKIK 289