BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00014779
         (943 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276909.1| PREDICTED: exosome complex exonuclease RRP44...   350   3e-94
ref|XP_002276939.1| PREDICTED: exosome complex exonuclease RRP44...   350   3e-94
ref|XP_003523275.1| PREDICTED: exosome complex exonuclease RRP44...   335   9e-90
ref|XP_003539576.1| PREDICTED: exosome complex exonuclease RRP44...   332   1e-88
dbj|BAA85401.1| unnamed protein product [Oryza sativa Japonica G...   331   2e-88

>ref|XP_002276909.1| PREDICTED: exosome complex exonuclease RRP44 isoform 1 [Vitis
           vinifera]
          Length = 899

 Score =  350 bits (898), Expect = 3e-94
 Identities = 180/273 (65%), Positives = 199/273 (72%)
 Frame = -2

Query: 819 RETFVKAMVGESPNDRNDRAIRVATSWYQRHLGGSTQVLLITNDKENKRKAIDEGISAET 640
           ++T+VK M GESPNDRNDRAIRVAT WYQ HLG + +VLLITND+ENKRKA +EGISAET
Sbjct: 117 KDTYVKQMAGESPNDRNDRAIRVATQWYQSHLGAAARVLLITNDRENKRKATEEGISAET 176

Query: 639 VETFVKSLGQPNLLDLVVRPNSEDVGMEDVADLRPSKRKVIYNEHKPLSEITSGLQRGIY 460
           VE++VK+LGQP LLDL+V+P  EDVGME+V DLRPSKRKVIY+EHKP+SEITSGL RGIY
Sbjct: 177 VESYVKALGQPGLLDLLVQPAPEDVGMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIY 236

Query: 459 HQGRLRVNRYNPFEAYVGSESIGDEIIIHGRSNMNRAFDGDVVVVELXXXXXXXXXXXXX 280
           HQG+LRVNRYNPFEAYVGSESIGDEIII+GR NMNRAFDGDVV VEL             
Sbjct: 237 HQGKLRVNRYNPFEAYVGSESIGDEIIIYGRGNMNRAFDGDVVAVEL------------- 283

Query: 279 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDAPRNVDVIQNSGRNVDSVSCR 100
                                                DDAPRN D+ Q S     +V CR
Sbjct: 284 -----LPQDQWQEEKSLSIADEEDEEEEDVHLVPSSADDAPRNTDLAQGSVGGTKAVLCR 338

Query: 99  PSGRVVGIIKRNWQSYCGSLEPMPMPAGNGGIA 1
           PSGRVVGIIKRNW SYCGSLEPMPMPAGNGGIA
Sbjct: 339 PSGRVVGIIKRNWHSYCGSLEPMPMPAGNGGIA 371


>ref|XP_002276939.1| PREDICTED: exosome complex exonuclease RRP44 isoform 2 [Vitis
           vinifera] gi|296082564|emb|CBI21569.3| unnamed protein
           product [Vitis vinifera]
          Length = 937

 Score =  350 bits (898), Expect = 3e-94
 Identities = 180/273 (65%), Positives = 199/273 (72%)
 Frame = -2

Query: 819 RETFVKAMVGESPNDRNDRAIRVATSWYQRHLGGSTQVLLITNDKENKRKAIDEGISAET 640
           ++T+VK M GESPNDRNDRAIRVAT WYQ HLG + +VLLITND+ENKRKA +EGISAET
Sbjct: 117 KDTYVKQMAGESPNDRNDRAIRVATQWYQSHLGAAARVLLITNDRENKRKATEEGISAET 176

Query: 639 VETFVKSLGQPNLLDLVVRPNSEDVGMEDVADLRPSKRKVIYNEHKPLSEITSGLQRGIY 460
           VE++VK+LGQP LLDL+V+P  EDVGME+V DLRPSKRKVIY+EHKP+SEITSGL RGIY
Sbjct: 177 VESYVKALGQPGLLDLLVQPAPEDVGMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIY 236

Query: 459 HQGRLRVNRYNPFEAYVGSESIGDEIIIHGRSNMNRAFDGDVVVVELXXXXXXXXXXXXX 280
           HQG+LRVNRYNPFEAYVGSESIGDEIII+GR NMNRAFDGDVV VEL             
Sbjct: 237 HQGKLRVNRYNPFEAYVGSESIGDEIIIYGRGNMNRAFDGDVVAVEL------------- 283

Query: 279 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDAPRNVDVIQNSGRNVDSVSCR 100
                                                DDAPRN D+ Q S     +V CR
Sbjct: 284 -----LPQDQWQEEKSLSIADEEDEEEEDVHLVPSSADDAPRNTDLAQGSVGGTKAVLCR 338

Query: 99  PSGRVVGIIKRNWQSYCGSLEPMPMPAGNGGIA 1
           PSGRVVGIIKRNW SYCGSLEPMPMPAGNGGIA
Sbjct: 339 PSGRVVGIIKRNWHSYCGSLEPMPMPAGNGGIA 371


>ref|XP_003523275.1| PREDICTED: exosome complex exonuclease RRP44-like [Glycine max]
          Length = 934

 Score =  335 bits (859), Expect = 9e-90
 Identities = 174/273 (63%), Positives = 197/273 (72%)
 Frame = -2

Query: 819 RETFVKAMVGESPNDRNDRAIRVATSWYQRHLGGSTQVLLITNDKENKRKAIDEGISAET 640
           R+T++K M GE+ NDRNDRAIRVAT WYQ HLGG+ +VLL+TNDKENKRKA +EGI AET
Sbjct: 117 RDTYIKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLLTNDKENKRKASEEGILAET 176

Query: 639 VETFVKSLGQPNLLDLVVRPNSEDVGMEDVADLRPSKRKVIYNEHKPLSEITSGLQRGIY 460
           VE++VKSL QP+LLDL+VRP SEDV ME+V DLRPSKRKVIY+EHKP+SEITSGL RGIY
Sbjct: 177 VESYVKSLDQPDLLDLLVRPASEDVDMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIY 236

Query: 459 HQGRLRVNRYNPFEAYVGSESIGDEIIIHGRSNMNRAFDGDVVVVELXXXXXXXXXXXXX 280
           HQG+LRVNRYNPFEAYVGSESIGDEIII+GRSNMNRAFDGD+V  EL             
Sbjct: 237 HQGKLRVNRYNPFEAYVGSESIGDEIIIYGRSNMNRAFDGDIVAAEL------------- 283

Query: 279 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDAPRNVDVIQNSGRNVDSVSCR 100
                                                DDAPR +   Q S   V++V  R
Sbjct: 284 -----LPQDQWQGVSSLSIAHEDEDEDEDVHLAPNSADDAPRTISQ-QGSSEQVNAVPSR 337

Query: 99  PSGRVVGIIKRNWQSYCGSLEPMPMPAGNGGIA 1
           PSGR+VGIIKRNW SYCGSLEPMPMPAG+GGIA
Sbjct: 338 PSGRIVGIIKRNWHSYCGSLEPMPMPAGSGGIA 370


>ref|XP_003539576.1| PREDICTED: exosome complex exonuclease RRP44-like [Glycine max]
          Length = 439

 Score =  332 bits (850), Expect = 1e-88
 Identities = 173/273 (63%), Positives = 196/273 (71%)
 Frame = -2

Query: 819 RETFVKAMVGESPNDRNDRAIRVATSWYQRHLGGSTQVLLITNDKENKRKAIDEGISAET 640
           R+T++K M GE+ NDRNDRAIRVAT WYQ HLGG+ +VLLITND+ENKRKA +EGI AET
Sbjct: 118 RDTYIKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDQENKRKASEEGILAET 177

Query: 639 VETFVKSLGQPNLLDLVVRPNSEDVGMEDVADLRPSKRKVIYNEHKPLSEITSGLQRGIY 460
           VE++VKSL QP+LLDL+VRP SEDV ME+V DLRPSKRKVIY+EHKP+SEITSGL RGIY
Sbjct: 178 VESYVKSLDQPDLLDLLVRPASEDVDMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIY 237

Query: 459 HQGRLRVNRYNPFEAYVGSESIGDEIIIHGRSNMNRAFDGDVVVVELXXXXXXXXXXXXX 280
           HQG+LRVNRYNPFEAYVGSESIGDEIII+GRSNMNRAFDGD+   EL             
Sbjct: 238 HQGKLRVNRYNPFEAYVGSESIGDEIIIYGRSNMNRAFDGDIEAAEL------------- 284

Query: 279 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDAPRNVDVIQNSGRNVDSVSCR 100
                                                DDAPR +   Q S   V++V  R
Sbjct: 285 -----LPQDQWQGVSSLSIAHEDEDEDEDVHLAPNSADDAPRTIPQ-QGSSEQVNAVPSR 338

Query: 99  PSGRVVGIIKRNWQSYCGSLEPMPMPAGNGGIA 1
           PSGR+VGIIKRNW SYCGSLEPMPMPAG+GGIA
Sbjct: 339 PSGRIVGIIKRNWHSYCGSLEPMPMPAGSGGIA 371


>dbj|BAA85401.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 908

 Score =  331 bits (848), Expect = 2e-88
 Identities = 173/274 (63%), Positives = 198/274 (72%), Gaps = 1/274 (0%)
 Frame = -2

Query: 819 RETFVKAMVGESPNDRNDRAIRVATSWYQRHLGGSTQVLLITNDKENKRKAIDEGISAET 640
           R+T+VK MVGESPNDRNDRAIRVAT WYQ HLG + +VLLITND++NKRKAI+EGI+AET
Sbjct: 117 RDTYVKEMVGESPNDRNDRAIRVATRWYQSHLGENVKVLLITNDRDNKRKAIEEGINAET 176

Query: 639 VETFVKSLGQPNLLDLVVRPNSEDVGMEDVADLRPSKRKVIYNEHKPLSEITSGLQRGIY 460
           VE++V+SL QP LLDLVV   S DV MEDV DLRPSK+KVIY+EHKP+SEIT+GL+ GIY
Sbjct: 177 VESYVRSLAQPGLLDLVVVSTSGDVTMEDVEDLRPSKKKVIYSEHKPMSEITAGLRCGIY 236

Query: 459 HQGRLRVNRYNPFEAYVGSESIGDEIIIHGRSNMNRAFDGDVVVVELXXXXXXXXXXXXX 280
           HQG+LRVNRYNPFEAYVGSESIGDEI+IHGRSNMNRAFDGD+V VEL             
Sbjct: 237 HQGKLRVNRYNPFEAYVGSESIGDEIVIHGRSNMNRAFDGDIVAVEL------------- 283

Query: 279 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDAPRNVDVIQN-SGRNVDSVSC 103
                                                DDAPR  +  Q+ +  + DSVS 
Sbjct: 284 ------LPQDQWHESKSFIADDDEDDEEDVHLAPNSADDAPRKANPTQSTAASSADSVSS 337

Query: 102 RPSGRVVGIIKRNWQSYCGSLEPMPMPAGNGGIA 1
           RP GRVVGIIKRNW SYCGSLEPMPMPAG+GG+A
Sbjct: 338 RPVGRVVGIIKRNWNSYCGSLEPMPMPAGSGGVA 371