BLASTX nr result
ID: Coptis21_contig00014760
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00014760 (1235 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 363 6e-98 emb|CBI34757.3| unnamed protein product [Vitis vinifera] 342 1e-91 ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar... 338 1e-90 ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub... 338 2e-90 ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me... 323 7e-86 >ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit 1-like [Vitis vinifera] Length = 1560 Score = 363 bits (931), Expect = 6e-98 Identities = 189/419 (45%), Positives = 255/419 (60%), Gaps = 13/419 (3%) Frame = +1 Query: 4 ECDSTRQTLKVELPKLHILTRICSATNAQNEKDEDICITVEAEVSRSSLLVMDTFRHTVI 183 +C+S R K+ LP L I ++ C + + E + CITV S+ S + +DT R VI Sbjct: 1052 KCNSARAESKINLPDLQITSKDCFV-DMEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVI 1110 Query: 184 PFLLGTVIKGFMEFNKVDILWSESNISD--KASRGELYMKVHLYEHCKSGTGWSLVVNKC 357 PFLLG V+KG ++ KVDILW+++ SD K+S G LY++V++ C W ++++ C Sbjct: 1111 PFLLGAVVKGLLDVKKVDILWNDNPDSDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDAC 1170 Query: 358 LRIMNLIDWNRSHPDSMHDLFCTYGINCSWEYFLRNLKVAVSDIGKSILPEHLLLVADCL 537 L+IM++IDW RSHPD++HD+F YGI+ W+YFL +LK A+SDIGK++LPEHLLLVA CL Sbjct: 1171 LQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCL 1230 Query: 538 TVTGQFTGLNAKGIAKQRDLVSVPSPFTQACFSSPGPCFIKAAKCGAEDGLLGVLNAAAW 717 + TG+F GLNAKG+A+Q++L S+ SPF Q CFSSPG CFIKA K D L G L+A AW Sbjct: 1231 SATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAW 1290 Query: 718 GKEVPLGTGGQFDIIYSGKVHEFSETLDIYNTLSGHLCPERQNVKISVPPTTQKRMSGKG 897 GK +G+GG FDI+YS K HE + DIY L QN+K+ VP T + + G Sbjct: 1291 GKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCG 1350 Query: 898 DTDVLQAFDSFIGKGPNDLK-----------GLQVLMMLHKNLQEILHRYPVNDFLNEKD 1044 V DS KG L+ L + L + L+ IL +YP+N L+E D Sbjct: 1351 AQLVYANGDS-ASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQLSEID 1409 Query: 1045 KSILTSALSYHPRSXXXXXXXXXXXXXXXHQKYKYSHCFILVRKDGSEDDFSYRKCVRG 1221 K+ L AL +HPR H KY + CF LVR DG+E+DFSY KCV G Sbjct: 1410 KTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHG 1468 >emb|CBI34757.3| unnamed protein product [Vitis vinifera] Length = 1359 Score = 342 bits (877), Expect = 1e-91 Identities = 184/417 (44%), Positives = 246/417 (58%), Gaps = 11/417 (2%) Frame = +1 Query: 4 ECDSTRQTLKVELPKLHILTRICSATNAQNEKDEDICITVEAEVSRSSLLVMDTFRHTVI 183 +C+S R K+ LP L I ++ C + + E + CITV S+ S + +DT R VI Sbjct: 921 KCNSARAESKINLPDLQITSKDCFV-DMEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVI 979 Query: 184 PFLLGTVIKGFMEFNKVDILWSESNISDKASRGELYMKVHLYEHCKSGTGWSLVVNKCLR 363 PFLLG V+KG N D+L K+S G LY++V++ C W ++++ CL+ Sbjct: 980 PFLLGAVVKGCCIKNS-DVL--------KSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQ 1030 Query: 364 IMNLIDWNRSHPDSMHDLFCTYGINCSWEYFLRNLKVAVSDIGKSILPEHLLLVADCLTV 543 IM++IDW RSHPD++HD+F YGI+ W+YFL +LK A+SDIGK++LPEHLLLVA CL+ Sbjct: 1031 IMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSA 1090 Query: 544 TGQFTGLNAKGIAKQRDLVSVPSPFTQACFSSPGPCFIKAAKCGAEDGLLGVLNAAAWGK 723 TG+F GLNAKG+A+Q++L S+ SPF Q CFSSPG CFIKA K D L G L+A AWGK Sbjct: 1091 TGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGK 1150 Query: 724 EVPLGTGGQFDIIYSGKVHEFSETLDIYNTLSGHLCPERQNVKISVPPTTQKRMSGKGDT 903 +G+GG FDI+YS K HE + DIY L QN+K+ VP T + + G Sbjct: 1151 IPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQ 1210 Query: 904 DVLQAFDSFIGKGPNDLK-----------GLQVLMMLHKNLQEILHRYPVNDFLNEKDKS 1050 V DS KG L+ L + L + L+ IL +YP+N L+E DK+ Sbjct: 1211 LVYANGDS-ASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQLSEIDKT 1269 Query: 1051 ILTSALSYHPRSXXXXXXXXXXXXXXXHQKYKYSHCFILVRKDGSEDDFSYRKCVRG 1221 L AL +HPR H KY + CF LVR DG+E+DFSY KCV G Sbjct: 1270 TLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHG 1326 >ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa] gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit [Populus trichocarpa] Length = 1517 Score = 338 bits (868), Expect = 1e-90 Identities = 181/416 (43%), Positives = 250/416 (60%), Gaps = 21/416 (5%) Frame = +1 Query: 31 KVELPKLHILTRICSATNAQNEKDEDICITVE-AEVSRSSLLVMDTFRHTVIPFLLGTVI 207 K PK+ I +R C+ + EK E CITV E S++ + ++T + +IPFLL TVI Sbjct: 1071 KTRFPKVQITSRYCTVADTWKEKKETFCITVTIVETSKNEFIELETIQDLMIPFLLETVI 1130 Query: 208 KGFMEFNKVDILWSESNISDKAS---RGELYMKVHLYEHCKSGTGWSLVVNKCLRIMNLI 378 KGFME KVDILW++ K+ RGEL+++VH+ W+ +++ CL IM+LI Sbjct: 1131 KGFMEIQKVDILWNDKPKIPKSHNRLRGELFLRVHMSRGSDKTRLWNQLMDDCLSIMDLI 1190 Query: 379 DWNRSHPDSMHDLFCTYGINCSWEYFLRNLKVAVSDIGKSILPEHLLLVADCLTVTGQFT 558 DW RSHPD++H+ YGI+ W++FL NL+ A+SD+GK++LPEHLLLVA+CL+VTG+F Sbjct: 1191 DWARSHPDNIHECCLAYGIDAGWKFFLNNLQSAMSDVGKTVLPEHLLLVANCLSVTGEFV 1250 Query: 559 GLNAKGIAKQRDLVSVPSPFTQACFSSPGPCFIKAAKCGAEDGLLGVLNAAAWGKEVPLG 738 GLNAKG+ +QR+ SV +PF QACFS+PG CFI+AAK G D L G ++A AWGK +G Sbjct: 1251 GLNAKGLKRQREHASVSTPFVQACFSNPGDCFIRAAKAGVVDDLQGSIDALAWGKVPAIG 1310 Query: 739 TGGQFDIIYSGKVHEFSETLDIYNTLSGHLCPERQNVKISVPPTTQKRMSGKGDTDVLQA 918 T GQFDI+YSGK EFS+ +D+YN L + QN + V K D Q Sbjct: 1311 T-GQFDIVYSGKGLEFSKPVDVYNLLGSQMISTEQNTEFGV----LDAQIYKSDKCGAQF 1365 Query: 919 FDSFIGKGPNDLKGLQV-----------------LMMLHKNLQEILHRYPVNDFLNEKDK 1047 F G GP KG +V + + +++IL++Y V+ LNE DK Sbjct: 1366 LHKFGGCGP---KGFKVKEGIPRSFLRRLLTYDDIQRMSYTVRKILNKYSVDQQLNESDK 1422 Query: 1048 SILTSALSYHPRSXXXXXXXXXXXXXXXHQKYKYSHCFILVRKDGSEDDFSYRKCV 1215 S+L L +HPR H +Y+ + CF LVR DG+ +DFSYRKC+ Sbjct: 1423 SVLMMTLYFHPRRDEKIGIGAKDIKVINHPEYQDTRCFSLVRTDGTIEDFSYRKCL 1478 >ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit 1-like [Cucumis sativus] Length = 1469 Score = 338 bits (867), Expect = 2e-90 Identities = 186/421 (44%), Positives = 251/421 (59%), Gaps = 16/421 (3%) Frame = +1 Query: 7 CDSTRQTLKVELPKLHILTRICSATNAQNEKDEDICITVE-AEVSRSSLLVMDTFRHTVI 183 CDS RQ ++ LP L I+T+ C ++ E + +C+TV AE +++S L +D + +I Sbjct: 1031 CDSMRQEGRMNLPSLQIITQDCPLADSLTEDGDTVCLTVTIAENTKNSFLQLDFIQDLLI 1090 Query: 184 PFLLGTVIKGFMEFNKVDILWSESNISDK--ASRGELYMKVHLYEHCKSGTG----WSLV 345 FLLGTVI+GF E ++VDI W++ K S GELY++V + SG G W+ + Sbjct: 1091 HFLLGTVIRGFTEIDRVDITWNDRPKVPKPRCSHGELYLRVTM-----SGEGNSRFWATL 1145 Query: 346 VNKCLRIMNLIDWNRSHPDSMHDLFCTYGINCSWEYFLRNLKVAVSDIGKSILPEHLLLV 525 +N CL IM+LIDW RSHPD+ H L YGI+ W+YFL +L+ A D+GK+I EHLLLV Sbjct: 1146 MNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDVGKTIRLEHLLLV 1205 Query: 526 ADCLTVTGQFTGLNAKGIAKQRDLVSVPSPFTQACFSSPGPCFIKAAKCGAEDGLLGVLN 705 ++ L+ TG+F GLN KG+ QR+ V +PF QACFSSPG C IKAAK G +D L G L+ Sbjct: 1206 SNSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPGACMIKAAKAGIKDNLSGSLD 1265 Query: 706 AAAWGKEVPLGTGGQFDIIYSGKVHEFSETLDIYNTLSGHLCPERQNVK--------ISV 861 A AWG+ LGTGGQFDI+YSGK HE ++ +D+YN L G E+QN K IS Sbjct: 1266 ALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLLGGQSTCEKQNTKIESLDKNTISE 1325 Query: 862 PPTTQKRMSGKGDT-DVLQAFDSFIGKGPNDLKGLQVLMMLHKNLQEILHRYPVNDFLNE 1038 + Q + G T L+ DS L + L L+ ILH+Y +N+ LNE Sbjct: 1326 KYSAQLMLKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQKLSFALRTILHKYSLNERLNE 1385 Query: 1039 KDKSILTSALSYHPRSXXXXXXXXXXXXXXXHQKYKYSHCFILVRKDGSEDDFSYRKCVR 1218 DKS L AL +HP H KY+ + CF+L+R DG+ +DFSY KCV Sbjct: 1386 VDKSTLMMALYFHPHRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTEDFSYHKCVL 1445 Query: 1219 G 1221 G Sbjct: 1446 G 1446 >ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula] gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula] Length = 1687 Score = 323 bits (827), Expect = 7e-86 Identities = 181/439 (41%), Positives = 248/439 (56%), Gaps = 32/439 (7%) Frame = +1 Query: 1 QECDSTRQTLKVELPKLHILTR-----------ICSA-----------TNAQNEKDEDIC 114 Q+ DS R+ KV LP L I ++ CS T+ NEKD + C Sbjct: 1180 QQYDSFRRESKVILPSLKISSKSGREVENKEGQTCSKCQDYKANEGGETSVGNEKDGEDC 1239 Query: 115 ITVEAEVSRSSLLVMDTFRHTVIPFLLGTVIKGFMEFNKVDILWSESNISDKA---SRGE 285 ITV + + +D+ R ++IPFLL T IKGF+E KVDILW + K+ S GE Sbjct: 1240 ITVAVVEDSKNSVQLDSVRKSLIPFLLQTAIKGFLEIKKVDILWKDLPKVTKSYNGSAGE 1299 Query: 286 LYMKVHLYEHCKSGTGWSLVVNKCLRIMNLIDWNRSHPDSMHDLFCTYGINCSWEYFLRN 465 LY++V + +GT W ++N C RIM LIDW RSHPD++H +GI+ W+++ N Sbjct: 1300 LYLRVTMSSGNDNGTFWGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFHN 1359 Query: 466 LKVAVSDIGKSILPEHLLLVADCLTVTGQFTGLNAKGIAKQRDLVSVPSPFTQACFSSPG 645 L A SD GKSILP+HL LVA+ L+ +G+F GLNAKG+A+QR SV SPF QACFS+PG Sbjct: 1360 LSSATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPG 1419 Query: 646 PCFIKAAKCGAEDGLLGVLNAAAWGKEVPLGTGGQFDIIYSGKVHEFSETLDIYNTLSGH 825 F+KAAK G D L G L+A AWG +P+GTGGQFDIIYS KV E ++++D+Y L Sbjct: 1420 SSFLKAAKSGIVDNLQGNLDALAWGNCLPMGTGGQFDIIYSEKVEEINKSVDVYGLLETS 1479 Query: 826 LCPERQNVKISVPPTTQKRMSGKGDTDVLQAFDSFIGKGPNDLKGLQVLMMLHKNLQE-- 999 Q + I P ++K SGK +D + K P K + M ++Q Sbjct: 1480 FNQMDQEINI---PQSRKYSSGKCSSDFRSKNGGYTPKEPKQWKSVLRNFMTANDIQRLT 1536 Query: 1000 -----ILHRYPVNDFLNEKDKSILTSALSYHPRSXXXXXXXXXXXXXXXHQKYKYSHCFI 1164 IL++Y +++ L+E DK + L +HPR H ++ S CF Sbjct: 1537 FDARVILNKYQIDETLSETDKLTIMKVLHFHPRRDEKFGSGPQNIKVGWHPEFTDSRCFF 1596 Query: 1165 LVRKDGSEDDFSYRKCVRG 1221 ++RKDGS +DFSYRKC+ G Sbjct: 1597 IIRKDGSVEDFSYRKCILG 1615