BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00014760
         (1235 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   363   6e-98
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              342   1e-91
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   338   1e-90
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   338   2e-90
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...   323   7e-86

>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  363 bits (931), Expect = 6e-98
 Identities = 189/419 (45%), Positives = 255/419 (60%), Gaps = 13/419 (3%)
 Frame = +1

Query: 4    ECDSTRQTLKVELPKLHILTRICSATNAQNEKDEDICITVEAEVSRSSLLVMDTFRHTVI 183
            +C+S R   K+ LP L I ++ C   + + E  +  CITV    S+ S + +DT R  VI
Sbjct: 1052 KCNSARAESKINLPDLQITSKDCFV-DMEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVI 1110

Query: 184  PFLLGTVIKGFMEFNKVDILWSESNISD--KASRGELYMKVHLYEHCKSGTGWSLVVNKC 357
            PFLLG V+KG ++  KVDILW+++  SD  K+S G LY++V++   C     W ++++ C
Sbjct: 1111 PFLLGAVVKGLLDVKKVDILWNDNPDSDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDAC 1170

Query: 358  LRIMNLIDWNRSHPDSMHDLFCTYGINCSWEYFLRNLKVAVSDIGKSILPEHLLLVADCL 537
            L+IM++IDW RSHPD++HD+F  YGI+  W+YFL +LK A+SDIGK++LPEHLLLVA CL
Sbjct: 1171 LQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCL 1230

Query: 538  TVTGQFTGLNAKGIAKQRDLVSVPSPFTQACFSSPGPCFIKAAKCGAEDGLLGVLNAAAW 717
            + TG+F GLNAKG+A+Q++L S+ SPF Q CFSSPG CFIKA K    D L G L+A AW
Sbjct: 1231 SATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAW 1290

Query: 718  GKEVPLGTGGQFDIIYSGKVHEFSETLDIYNTLSGHLCPERQNVKISVPPTTQKRMSGKG 897
            GK   +G+GG FDI+YS K HE +   DIY  L        QN+K+ VP T  +  +  G
Sbjct: 1291 GKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCG 1350

Query: 898  DTDVLQAFDSFIGKGPNDLK-----------GLQVLMMLHKNLQEILHRYPVNDFLNEKD 1044
               V    DS   KG   L+            L  +  L + L+ IL +YP+N  L+E D
Sbjct: 1351 AQLVYANGDS-ASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQLSEID 1409

Query: 1045 KSILTSALSYHPRSXXXXXXXXXXXXXXXHQKYKYSHCFILVRKDGSEDDFSYRKCVRG 1221
            K+ L  AL +HPR                H KY  + CF LVR DG+E+DFSY KCV G
Sbjct: 1410 KTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHG 1468


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  342 bits (877), Expect = 1e-91
 Identities = 184/417 (44%), Positives = 246/417 (58%), Gaps = 11/417 (2%)
 Frame = +1

Query: 4    ECDSTRQTLKVELPKLHILTRICSATNAQNEKDEDICITVEAEVSRSSLLVMDTFRHTVI 183
            +C+S R   K+ LP L I ++ C   + + E  +  CITV    S+ S + +DT R  VI
Sbjct: 921  KCNSARAESKINLPDLQITSKDCFV-DMEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVI 979

Query: 184  PFLLGTVIKGFMEFNKVDILWSESNISDKASRGELYMKVHLYEHCKSGTGWSLVVNKCLR 363
            PFLLG V+KG    N  D+L        K+S G LY++V++   C     W ++++ CL+
Sbjct: 980  PFLLGAVVKGCCIKNS-DVL--------KSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQ 1030

Query: 364  IMNLIDWNRSHPDSMHDLFCTYGINCSWEYFLRNLKVAVSDIGKSILPEHLLLVADCLTV 543
            IM++IDW RSHPD++HD+F  YGI+  W+YFL +LK A+SDIGK++LPEHLLLVA CL+ 
Sbjct: 1031 IMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSA 1090

Query: 544  TGQFTGLNAKGIAKQRDLVSVPSPFTQACFSSPGPCFIKAAKCGAEDGLLGVLNAAAWGK 723
            TG+F GLNAKG+A+Q++L S+ SPF Q CFSSPG CFIKA K    D L G L+A AWGK
Sbjct: 1091 TGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGK 1150

Query: 724  EVPLGTGGQFDIIYSGKVHEFSETLDIYNTLSGHLCPERQNVKISVPPTTQKRMSGKGDT 903
               +G+GG FDI+YS K HE +   DIY  L        QN+K+ VP T  +  +  G  
Sbjct: 1151 IPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQ 1210

Query: 904  DVLQAFDSFIGKGPNDLK-----------GLQVLMMLHKNLQEILHRYPVNDFLNEKDKS 1050
             V    DS   KG   L+            L  +  L + L+ IL +YP+N  L+E DK+
Sbjct: 1211 LVYANGDS-ASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQLSEIDKT 1269

Query: 1051 ILTSALSYHPRSXXXXXXXXXXXXXXXHQKYKYSHCFILVRKDGSEDDFSYRKCVRG 1221
             L  AL +HPR                H KY  + CF LVR DG+E+DFSY KCV G
Sbjct: 1270 TLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHG 1326


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 1517

 Score =  338 bits (868), Expect = 1e-90
 Identities = 181/416 (43%), Positives = 250/416 (60%), Gaps = 21/416 (5%)
 Frame = +1

Query: 31   KVELPKLHILTRICSATNAQNEKDEDICITVE-AEVSRSSLLVMDTFRHTVIPFLLGTVI 207
            K   PK+ I +R C+  +   EK E  CITV   E S++  + ++T +  +IPFLL TVI
Sbjct: 1071 KTRFPKVQITSRYCTVADTWKEKKETFCITVTIVETSKNEFIELETIQDLMIPFLLETVI 1130

Query: 208  KGFMEFNKVDILWSESNISDKAS---RGELYMKVHLYEHCKSGTGWSLVVNKCLRIMNLI 378
            KGFME  KVDILW++     K+    RGEL+++VH+         W+ +++ CL IM+LI
Sbjct: 1131 KGFMEIQKVDILWNDKPKIPKSHNRLRGELFLRVHMSRGSDKTRLWNQLMDDCLSIMDLI 1190

Query: 379  DWNRSHPDSMHDLFCTYGINCSWEYFLRNLKVAVSDIGKSILPEHLLLVADCLTVTGQFT 558
            DW RSHPD++H+    YGI+  W++FL NL+ A+SD+GK++LPEHLLLVA+CL+VTG+F 
Sbjct: 1191 DWARSHPDNIHECCLAYGIDAGWKFFLNNLQSAMSDVGKTVLPEHLLLVANCLSVTGEFV 1250

Query: 559  GLNAKGIAKQRDLVSVPSPFTQACFSSPGPCFIKAAKCGAEDGLLGVLNAAAWGKEVPLG 738
            GLNAKG+ +QR+  SV +PF QACFS+PG CFI+AAK G  D L G ++A AWGK   +G
Sbjct: 1251 GLNAKGLKRQREHASVSTPFVQACFSNPGDCFIRAAKAGVVDDLQGSIDALAWGKVPAIG 1310

Query: 739  TGGQFDIIYSGKVHEFSETLDIYNTLSGHLCPERQNVKISVPPTTQKRMSGKGDTDVLQA 918
            T GQFDI+YSGK  EFS+ +D+YN L   +    QN +  V          K D    Q 
Sbjct: 1311 T-GQFDIVYSGKGLEFSKPVDVYNLLGSQMISTEQNTEFGV----LDAQIYKSDKCGAQF 1365

Query: 919  FDSFIGKGPNDLKGLQV-----------------LMMLHKNLQEILHRYPVNDFLNEKDK 1047
               F G GP   KG +V                 +  +   +++IL++Y V+  LNE DK
Sbjct: 1366 LHKFGGCGP---KGFKVKEGIPRSFLRRLLTYDDIQRMSYTVRKILNKYSVDQQLNESDK 1422

Query: 1048 SILTSALSYHPRSXXXXXXXXXXXXXXXHQKYKYSHCFILVRKDGSEDDFSYRKCV 1215
            S+L   L +HPR                H +Y+ + CF LVR DG+ +DFSYRKC+
Sbjct: 1423 SVLMMTLYFHPRRDEKIGIGAKDIKVINHPEYQDTRCFSLVRTDGTIEDFSYRKCL 1478


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score =  338 bits (867), Expect = 2e-90
 Identities = 186/421 (44%), Positives = 251/421 (59%), Gaps = 16/421 (3%)
 Frame = +1

Query: 7    CDSTRQTLKVELPKLHILTRICSATNAQNEKDEDICITVE-AEVSRSSLLVMDTFRHTVI 183
            CDS RQ  ++ LP L I+T+ C   ++  E  + +C+TV  AE +++S L +D  +  +I
Sbjct: 1031 CDSMRQEGRMNLPSLQIITQDCPLADSLTEDGDTVCLTVTIAENTKNSFLQLDFIQDLLI 1090

Query: 184  PFLLGTVIKGFMEFNKVDILWSESNISDK--ASRGELYMKVHLYEHCKSGTG----WSLV 345
             FLLGTVI+GF E ++VDI W++     K   S GELY++V +     SG G    W+ +
Sbjct: 1091 HFLLGTVIRGFTEIDRVDITWNDRPKVPKPRCSHGELYLRVTM-----SGEGNSRFWATL 1145

Query: 346  VNKCLRIMNLIDWNRSHPDSMHDLFCTYGINCSWEYFLRNLKVAVSDIGKSILPEHLLLV 525
            +N CL IM+LIDW RSHPD+ H L   YGI+  W+YFL +L+ A  D+GK+I  EHLLLV
Sbjct: 1146 MNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDVGKTIRLEHLLLV 1205

Query: 526  ADCLTVTGQFTGLNAKGIAKQRDLVSVPSPFTQACFSSPGPCFIKAAKCGAEDGLLGVLN 705
            ++ L+ TG+F GLN KG+  QR+   V +PF QACFSSPG C IKAAK G +D L G L+
Sbjct: 1206 SNSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPGACMIKAAKAGIKDNLSGSLD 1265

Query: 706  AAAWGKEVPLGTGGQFDIIYSGKVHEFSETLDIYNTLSGHLCPERQNVK--------ISV 861
            A AWG+   LGTGGQFDI+YSGK HE ++ +D+YN L G    E+QN K        IS 
Sbjct: 1266 ALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLLGGQSTCEKQNTKIESLDKNTISE 1325

Query: 862  PPTTQKRMSGKGDT-DVLQAFDSFIGKGPNDLKGLQVLMMLHKNLQEILHRYPVNDFLNE 1038
              + Q  +   G T   L+  DS           L  +  L   L+ ILH+Y +N+ LNE
Sbjct: 1326 KYSAQLMLKNGGSTIKGLKRLDSVSKSILRKFLTLNDIQKLSFALRTILHKYSLNERLNE 1385

Query: 1039 KDKSILTSALSYHPRSXXXXXXXXXXXXXXXHQKYKYSHCFILVRKDGSEDDFSYRKCVR 1218
             DKS L  AL +HP                 H KY+ + CF+L+R DG+ +DFSY KCV 
Sbjct: 1386 VDKSTLMMALYFHPHRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTEDFSYHKCVL 1445

Query: 1219 G 1221
            G
Sbjct: 1446 G 1446


>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1687

 Score =  323 bits (827), Expect = 7e-86
 Identities = 181/439 (41%), Positives = 248/439 (56%), Gaps = 32/439 (7%)
 Frame = +1

Query: 1    QECDSTRQTLKVELPKLHILTR-----------ICSA-----------TNAQNEKDEDIC 114
            Q+ DS R+  KV LP L I ++            CS            T+  NEKD + C
Sbjct: 1180 QQYDSFRRESKVILPSLKISSKSGREVENKEGQTCSKCQDYKANEGGETSVGNEKDGEDC 1239

Query: 115  ITVEAEVSRSSLLVMDTFRHTVIPFLLGTVIKGFMEFNKVDILWSESNISDKA---SRGE 285
            ITV       + + +D+ R ++IPFLL T IKGF+E  KVDILW +     K+   S GE
Sbjct: 1240 ITVAVVEDSKNSVQLDSVRKSLIPFLLQTAIKGFLEIKKVDILWKDLPKVTKSYNGSAGE 1299

Query: 286  LYMKVHLYEHCKSGTGWSLVVNKCLRIMNLIDWNRSHPDSMHDLFCTYGINCSWEYFLRN 465
            LY++V +     +GT W  ++N C RIM LIDW RSHPD++H     +GI+  W+++  N
Sbjct: 1300 LYLRVTMSSGNDNGTFWGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFHN 1359

Query: 466  LKVAVSDIGKSILPEHLLLVADCLTVTGQFTGLNAKGIAKQRDLVSVPSPFTQACFSSPG 645
            L  A SD GKSILP+HL LVA+ L+ +G+F GLNAKG+A+QR   SV SPF QACFS+PG
Sbjct: 1360 LSSATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPG 1419

Query: 646  PCFIKAAKCGAEDGLLGVLNAAAWGKEVPLGTGGQFDIIYSGKVHEFSETLDIYNTLSGH 825
              F+KAAK G  D L G L+A AWG  +P+GTGGQFDIIYS KV E ++++D+Y  L   
Sbjct: 1420 SSFLKAAKSGIVDNLQGNLDALAWGNCLPMGTGGQFDIIYSEKVEEINKSVDVYGLLETS 1479

Query: 826  LCPERQNVKISVPPTTQKRMSGKGDTDVLQAFDSFIGKGPNDLKGLQVLMMLHKNLQE-- 999
                 Q + I   P ++K  SGK  +D       +  K P   K +    M   ++Q   
Sbjct: 1480 FNQMDQEINI---PQSRKYSSGKCSSDFRSKNGGYTPKEPKQWKSVLRNFMTANDIQRLT 1536

Query: 1000 -----ILHRYPVNDFLNEKDKSILTSALSYHPRSXXXXXXXXXXXXXXXHQKYKYSHCFI 1164
                 IL++Y +++ L+E DK  +   L +HPR                H ++  S CF 
Sbjct: 1537 FDARVILNKYQIDETLSETDKLTIMKVLHFHPRRDEKFGSGPQNIKVGWHPEFTDSRCFF 1596

Query: 1165 LVRKDGSEDDFSYRKCVRG 1221
            ++RKDGS +DFSYRKC+ G
Sbjct: 1597 IIRKDGSVEDFSYRKCILG 1615