BLASTX nr result

ID: Coptis21_contig00014756 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00014756
         (267 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002321703.1| predicted protein [Populus trichocarpa] gi|2...   140   8e-32
ref|XP_004158283.1| PREDICTED: LOW QUALITY PROTEIN: 50S ribosoma...   135   3e-30
ref|XP_004144239.1| PREDICTED: 50S ribosomal protein L21, mitoch...   135   3e-30
ref|XP_002519068.1| 50S ribosomal protein L21, mitochondrial pre...   135   3e-30
gb|ADN33989.1| 50S ribosomal protein l21 mitochondrial precursor...   135   5e-30

>ref|XP_002321703.1| predicted protein [Populus trichocarpa] gi|222868699|gb|EEF05830.1|
           predicted protein [Populus trichocarpa]
          Length = 381

 Score =  140 bits (354), Expect = 8e-32
 Identities = 68/88 (77%), Positives = 79/88 (89%)
 Frame = +3

Query: 3   YSLEEMKEEAAAIGYKVIGPLDPTERPFKYREPFFAVIQIGSHQFKVSNGDTIYTEKLKF 182
           YS EE++ EAAAIGYKVIGPL P++R  K+REP FAV+QIGSHQFKVSNGD IY E+LKF
Sbjct: 109 YSAEEIEAEAAAIGYKVIGPLLPSDRVLKHREPVFAVVQIGSHQFKVSNGDCIYVERLKF 168

Query: 183 CEVNDKLILDKVLMVGSKSQTIIGRPIL 266
           CEVNDKLIL+KVLM+G+ +QTIIGRPIL
Sbjct: 169 CEVNDKLILNKVLMLGTSTQTIIGRPIL 196


>ref|XP_004158283.1| PREDICTED: LOW QUALITY PROTEIN: 50S ribosomal protein L21,
           mitochondrial-like [Cucumis sativus]
          Length = 270

 Score =  135 bits (340), Expect = 3e-30
 Identities = 65/86 (75%), Positives = 77/86 (89%)
 Frame = +3

Query: 3   YSLEEMKEEAAAIGYKVIGPLDPTERPFKYREPFFAVIQIGSHQFKVSNGDTIYTEKLKF 182
           Y+ EEM+ EAAAIGYKV+GPLD +E  FK  EP FAV+QIGSHQFKVSNGD+I+TE+LKF
Sbjct: 109 YTKEEMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKF 168

Query: 183 CEVNDKLILDKVLMVGSKSQTIIGRP 260
           C+VNDKLIL+KVL+VGS SQTI+GRP
Sbjct: 169 CDVNDKLILNKVLLVGSSSQTIVGRP 194


>ref|XP_004144239.1| PREDICTED: 50S ribosomal protein L21, mitochondrial-like [Cucumis
           sativus]
          Length = 270

 Score =  135 bits (340), Expect = 3e-30
 Identities = 65/86 (75%), Positives = 77/86 (89%)
 Frame = +3

Query: 3   YSLEEMKEEAAAIGYKVIGPLDPTERPFKYREPFFAVIQIGSHQFKVSNGDTIYTEKLKF 182
           Y+ EEM+ EAAAIGYKV+GPLD +E  FK  EP FAV+QIGSHQFKVSNGD+I+TE+LKF
Sbjct: 109 YTKEEMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKF 168

Query: 183 CEVNDKLILDKVLMVGSKSQTIIGRP 260
           C+VNDKLIL+KVL+VGS SQTI+GRP
Sbjct: 169 CDVNDKLILNKVLLVGSSSQTIVGRP 194


>ref|XP_002519068.1| 50S ribosomal protein L21, mitochondrial precursor, putative
           [Ricinus communis] gi|223541731|gb|EEF43279.1| 50S
           ribosomal protein L21, mitochondrial precursor, putative
           [Ricinus communis]
          Length = 268

 Score =  135 bits (340), Expect = 3e-30
 Identities = 65/88 (73%), Positives = 79/88 (89%)
 Frame = +3

Query: 3   YSLEEMKEEAAAIGYKVIGPLDPTERPFKYREPFFAVIQIGSHQFKVSNGDTIYTEKLKF 182
           Y+L+E +EEAAAIGYKVIGPL  +ER  K  EP FAVIQIGSHQFKVSNGD I+TE+LKF
Sbjct: 105 YTLQEKEEEAAAIGYKVIGPLGDSERVIKAYEPVFAVIQIGSHQFKVSNGDCIFTERLKF 164

Query: 183 CEVNDKLILDKVLMVGSKSQTIIGRPIL 266
           C+VNDKLIL+KVL+VGS++QTI+GRP++
Sbjct: 165 CDVNDKLILNKVLLVGSQTQTIVGRPMV 192


>gb|ADN33989.1| 50S ribosomal protein l21 mitochondrial precursor [Cucumis melo
           subsp. melo]
          Length = 279

 Score =  135 bits (339), Expect = 5e-30
 Identities = 65/86 (75%), Positives = 77/86 (89%)
 Frame = +3

Query: 3   YSLEEMKEEAAAIGYKVIGPLDPTERPFKYREPFFAVIQIGSHQFKVSNGDTIYTEKLKF 182
           Y+ EEM+ EAAAIGYKV+GPLD +E  FK  EP FAV+QIGSHQFKVSNGD+I+TE+LKF
Sbjct: 118 YTKEEMEAEAAAIGYKVLGPLDQSEGIFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKF 177

Query: 183 CEVNDKLILDKVLMVGSKSQTIIGRP 260
           C+VNDKLIL+KVL+VGS SQTI+GRP
Sbjct: 178 CDVNDKLILNKVLLVGSSSQTIVGRP 203


Top