BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00014724
         (275 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004137893.1| PREDICTED: pentatricopeptide repeat-containi...    72   6e-11
ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containi...    68   9e-10
emb|CAN63706.1| hypothetical protein VITISV_013107 [Vitis vinifera]    68   9e-10
ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|2...    64   2e-08
ref|XP_003623530.1| Pentatricopeptide repeat-containing protein ...    58   9e-07

>ref|XP_004137893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Cucumis sativus]
           gi|449483740|ref|XP_004156675.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Cucumis sativus]
          Length = 491

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 35/74 (47%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
 Frame = -1

Query: 221 TLLNNTGNLLRKRRKWGQSLTPYKGKWQETFNQQQAMEALKKAANNDEKP-LVSVLVNSF 45
           +++  + N LRK RKW   L+ +K KW +TF+Q +A+  LK+AAN D+   L+S LV SF
Sbjct: 6   SVVKKSNNFLRKHRKW--PLSSHKTKWHQTFDQDEALRILKQAANPDQPHLLLSALVTSF 63

Query: 44  EMYACEPTPSAYSF 3
             Y+C PTP+AY F
Sbjct: 64  TAYSCHPTPNAYYF 77


>ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Vitis vinifera]
          Length = 505

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
 Frame = -1

Query: 200 NLLRKRRKWGQSLTPYKGKWQETFNQQQAMEALKKA-ANNDEKP-------LVSVLVNSF 45
           N LRKRRKW   L+PYK  W ETF+ +QAM+ LK   AN    P        +S+L++SF
Sbjct: 11  NFLRKRRKW--PLSPYKATWHETFHHRQAMQTLKNTIANQSPSPQSPSNSQFLSILIDSF 68

Query: 44  EMYACEPTPSAYSF 3
            +Y  +PTP+AY F
Sbjct: 69  RIYNSDPTPNAYRF 82


>emb|CAN63706.1| hypothetical protein VITISV_013107 [Vitis vinifera]
          Length = 390

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
 Frame = -1

Query: 200 NLLRKRRKWGQSLTPYKGKWQETFNQQQAMEALKKA-ANNDEKP-------LVSVLVNSF 45
           N LRKRRKW   L+PYK  W ETF+ +QAM+ LK   AN    P        +S+L++SF
Sbjct: 13  NFLRKRRKW--PLSPYKATWHETFHHRQAMQTLKNTIANQSPSPQSPSNSQFLSILIDSF 70

Query: 44  EMYACEPTPSAYSF 3
            +Y  +PTP+AY F
Sbjct: 71  RIYNSDPTPNAYRF 84


>ref|XP_002309173.1| predicted protein [Populus trichocarpa] gi|222855149|gb|EEE92696.1|
           predicted protein [Populus trichocarpa]
          Length = 506

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 7/71 (9%)
 Frame = -1

Query: 194 LRKRRKWGQSLTPYKGKWQETFNQQQAMEALKKAA------NNDEKP-LVSVLVNSFEMY 36
           LRK RKW  S  PYK +W   FNQQQAM++LK++A       +  KP L+S L++SF +Y
Sbjct: 14  LRKHRKWPYS--PYKARWHRIFNQQQAMQSLKQSALKPPQQESPNKPHLLSSLIHSFSIY 71

Query: 35  ACEPTPSAYSF 3
             EP P A+ F
Sbjct: 72  DVEPAPKAFDF 82


>ref|XP_003623530.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355498545|gb|AES79748.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 653

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
 Frame = -1

Query: 215 LNNTGN-LLRKRRKWGQSLTPYKGKWQETFNQQQAMEALKKAA----NNDEKPLVSVLVN 51
           L+ T N  LRK RKW  S  PYK  W   F +QQA++ L  A     NN++  L+S L++
Sbjct: 6   LSKTANKYLRKFRKWPHS--PYKTSWHHNFGEQQAIQILINAKTQTQNNNDPFLLSTLIH 63

Query: 50  SFEMYACEPTPSAYSF 3
           SF+ Y  +P+P AY F
Sbjct: 64  SFKAYHTDPSPKAYFF 79