BLASTX nr result

ID: Coptis21_contig00014655 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00014655
         (248 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002298275.1| predicted protein [Populus trichocarpa] gi|2...    60   2e-07
ref|XP_002313486.1| predicted protein [Populus trichocarpa] gi|2...    59   3e-07
ref|XP_002272164.1| PREDICTED: uncharacterized protein LOC100258...    54   1e-05

>ref|XP_002298275.1| predicted protein [Populus trichocarpa] gi|222845533|gb|EEE83080.1|
           predicted protein [Populus trichocarpa]
          Length = 248

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 30/81 (37%), Positives = 40/81 (49%)
 Frame = +3

Query: 3   TQPNPQRAAFFRRVLIIFVSICIIFGALSLILWLVLRPHVPEFQIXXXXXXXXXXXXXXX 182
           T PN QRA F RR++I  +    IF  +  I WLV+RPH PEF++               
Sbjct: 52  TYPN-QRAIFLRRLIIALIIFTGIFFTILFICWLVIRPHFPEFRVTSLSISNFNVSSSSS 110

Query: 183 XXXGNWDIEFIAKNPNKKLNV 245
              G W+  F   NPNKK+ +
Sbjct: 111 SVTGTWNARFQVSNPNKKMKI 131


>ref|XP_002313486.1| predicted protein [Populus trichocarpa] gi|222849894|gb|EEE87441.1|
           predicted protein [Populus trichocarpa]
          Length = 246

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +3

Query: 6   QPNP-QRAAFFRRVLIIFVSICIIFGALSLILWLVLRPHVPEFQIXXXXXXXXXXXXXXX 182
           QP P QRA   RR++   + + +IF  +  I+WLV+RPH+PEF++               
Sbjct: 50  QPYPNQRATLLRRLIAALIIVTVIFFTILFIVWLVIRPHLPEFRVTSLSVSSFNASSSSS 109

Query: 183 XXXGNWDIEFIAKNPNK 233
              GNW+  F   NPNK
Sbjct: 110 SVSGNWNARFQVYNPNK 126


>ref|XP_002272164.1| PREDICTED: uncharacterized protein LOC100258714 [Vitis vinifera]
          Length = 239

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 27/75 (36%), Positives = 38/75 (50%)
 Frame = +3

Query: 21  RAAFFRRVLIIFVSICIIFGALSLILWLVLRPHVPEFQIXXXXXXXXXXXXXXXXXXGNW 200
           RA F RR L   ++  II G +  I+WLVLRP +P F +                  G W
Sbjct: 53  RATFLRRFLAAMIAFFIIVGTIIFIVWLVLRPRLPYFSV--ASASLSSFNVSASQLSGEW 110

Query: 201 DIEFIAKNPNKKLNV 245
           +I F  +NPNKK+++
Sbjct: 111 NISFDVRNPNKKISI 125


Top