BLASTX nr result

ID: Coptis21_contig00014511 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00014511
         (341 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277851.2| PREDICTED: uncharacterized protein LOC100259...   137   1e-30
ref|NP_001242801.1| uncharacterized protein LOC100808934 [Glycin...   123   1e-26
ref|XP_002326236.1| predicted protein [Populus trichocarpa] gi|2...   122   2e-26
gb|AAF04419.1|AC010927_12 unknown protein [Arabidopsis thaliana]      122   3e-26
ref|NP_187615.2| sequence-specific DNA binding transcription fac...   122   3e-26

>ref|XP_002277851.2| PREDICTED: uncharacterized protein LOC100259589 [Vitis vinifera]
          Length = 470

 Score =  137 bits (344), Expect = 1e-30
 Identities = 74/122 (60%), Positives = 85/122 (69%), Gaps = 9/122 (7%)
 Frame = +2

Query: 2   RVTDILGKGTACGVVENQSLLNTMDQLTPKMKDEVRKLLNSKHLFFKEMCAYHTSCGGSV 181
           RV DILGKGTAC VVENQSLL+TMDQL+PKMKDEVRKLLNSKHLFF+EMCAYH SCGG  
Sbjct: 167 RVNDILGKGTACRVVENQSLLDTMDQLSPKMKDEVRKLLNSKHLFFREMCAYHNSCGGGG 226

Query: 182 SNGGGHQSPEAVLESSPHRQQ--------QQLCFHSS-ENGTVGANLRNRMETEELRNVN 334
           ++G     P+  +E   H+QQ        QQ C HSS E  T+G N  +R ETE  + V 
Sbjct: 227 TSGAHPSPPDTAVEPPQHQQQQQQHQHQHQQRCLHSSTEIATIGPN-ASRAETEASKMVK 285

Query: 335 EG 340
            G
Sbjct: 286 MG 287


>ref|NP_001242801.1| uncharacterized protein LOC100808934 [Glycine max]
           gi|255642557|gb|ACU21542.1| unknown [Glycine max]
          Length = 455

 Score =  123 bits (309), Expect = 1e-26
 Identities = 65/112 (58%), Positives = 76/112 (67%), Gaps = 3/112 (2%)
 Frame = +2

Query: 2   RVTDILGKGTACGVVENQSLLNTMDQLTPKMKDEVRKLLNSKHLFFKEMCAYHTSCGGSV 181
           RV DILGKGTAC VVENQ+LL+TMD L+PKMK+EVRKLLNSKHLFF+EMCAYH SCG + 
Sbjct: 188 RVNDILGKGTACRVVENQTLLDTMD-LSPKMKEEVRKLLNSKHLFFREMCAYHNSCGHNN 246

Query: 182 SNGGGHQSPEAVLESSP---HRQQQQLCFHSSENGTVGANLRNRMETEELRN 328
           +N  G  S        P   H  QQQ C HSSENG     +    E E++ +
Sbjct: 247 NNNCGSTSNVQQSTDQPLHQHNHQQQQCLHSSENGVGSLRMLKEDEDEDIED 298


>ref|XP_002326236.1| predicted protein [Populus trichocarpa] gi|222833429|gb|EEE71906.1|
           predicted protein [Populus trichocarpa]
          Length = 483

 Score =  122 bits (307), Expect = 2e-26
 Identities = 67/115 (58%), Positives = 77/115 (66%), Gaps = 8/115 (6%)
 Frame = +2

Query: 2   RVTDILGKGTACGVVENQSLLNTMDQLTPKMKDEVRKLLNSKHLFFKEMCAYHTSCGGSV 181
           RV DILGKGTAC VVENQSLL+TMD L+PKMKDEVRKLLNSKHLFF+EMCAYH SCG + 
Sbjct: 167 RVNDILGKGTACRVVENQSLLDTMD-LSPKMKDEVRKLLNSKHLFFREMCAYHNSCGHAG 225

Query: 182 SNGGGHQSPEAVLESS--------PHRQQQQLCFHSSENGTVGANLRNRMETEEL 322
              G + SPE   + S          +QQ Q C HS+EN  V  N R   E  ++
Sbjct: 226 VASGINNSPEMATDPSHAQHQQATQQQQQYQRCSHSTENAQVVTNSRTETEGSKM 280


>gb|AAF04419.1|AC010927_12 unknown protein [Arabidopsis thaliana]
          Length = 418

 Score =  122 bits (306), Expect = 3e-26
 Identities = 66/108 (61%), Positives = 77/108 (71%), Gaps = 2/108 (1%)
 Frame = +2

Query: 2   RVTDILGKGTACGVVENQSLLNTMDQLTPKMKDEVRKLLNSKHLFFKEMCAYHTSCGGSV 181
           RV DILGKG AC VVENQ LL +MD LTPK+KDEV+KLLNSKHLFF+EMCAYH SCG   
Sbjct: 175 RVNDILGKGIACRVVENQGLLESMDHLTPKLKDEVKKLLNSKHLFFREMCAYHNSCG--- 231

Query: 182 SNGGGH--QSPEAVLESSPHRQQQQLCFHSSENGTVGANLRNRMETEE 319
            + GGH  Q P+    S P   QQQ CFH++E G + A +  R+E EE
Sbjct: 232 -HLGGHDQQPPQQNPISIPIPSQQQNCFHAAEAGKM-ARIAERVEVEE 277


>ref|NP_187615.2| sequence-specific DNA binding transcription factor [Arabidopsis
           thaliana] gi|23270391|gb|AAM13849.2| unknown protein
           [Arabidopsis thaliana] gi|332641332|gb|AEE74853.1|
           sequence-specific DNA binding transcription factor
           [Arabidopsis thaliana]
          Length = 431

 Score =  122 bits (306), Expect = 3e-26
 Identities = 66/108 (61%), Positives = 77/108 (71%), Gaps = 2/108 (1%)
 Frame = +2

Query: 2   RVTDILGKGTACGVVENQSLLNTMDQLTPKMKDEVRKLLNSKHLFFKEMCAYHTSCGGSV 181
           RV DILGKG AC VVENQ LL +MD LTPK+KDEV+KLLNSKHLFF+EMCAYH SCG   
Sbjct: 188 RVNDILGKGIACRVVENQGLLESMDHLTPKLKDEVKKLLNSKHLFFREMCAYHNSCG--- 244

Query: 182 SNGGGH--QSPEAVLESSPHRQQQQLCFHSSENGTVGANLRNRMETEE 319
            + GGH  Q P+    S P   QQQ CFH++E G + A +  R+E EE
Sbjct: 245 -HLGGHDQQPPQQNPISIPIPSQQQNCFHAAEAGKM-ARIAERVEVEE 290


Top