BLASTX nr result

ID: Coptis21_contig00014483 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00014483
         (503 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310987.1| predicted protein [Populus trichocarpa] gi|2...    66   3e-09
ref|XP_002327346.1| predicted protein [Populus trichocarpa] gi|2...    59   3e-07
ref|XP_002333768.1| predicted protein [Populus trichocarpa] gi|2...    59   4e-07
ref|XP_002327345.1| predicted protein [Populus trichocarpa] gi|2...    58   9e-07

>ref|XP_002310987.1| predicted protein [Populus trichocarpa] gi|222850807|gb|EEE88354.1|
           predicted protein [Populus trichocarpa]
          Length = 396

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
 Frame = -2

Query: 346 LDSDLLAEIISRLAI-KHMIACQCVSRSWHHVVSTICIPKIT-SLPVYGLLFNTRRILDG 173
           L  D+L EI+ R+   KH+I  + V +SW+++++  C+PKI+ S P++G ++  ++I  G
Sbjct: 25  LPDDVLVEILCRVTDRKHLIRLKSVCKSWNNLITDACVPKISASSPLHGFIYLAKKIGFG 84

Query: 172 -PGIEKGPWSFACINAFNEKVSLPNTSLVESCLGRSLPFDPSPDSFLDCCNGMLLFFD 2
            P I+  P       A    V+      V+S     LPF+P+   FLDCCNG+LLF +
Sbjct: 85  KPYIDYIPC------AITPAVAPEPHEFVKS-YSSLLPFEPARGDFLDCCNGLLLFVE 135


>ref|XP_002327346.1| predicted protein [Populus trichocarpa] gi|222835716|gb|EEE74151.1|
           predicted protein [Populus trichocarpa]
          Length = 334

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 14/130 (10%)
 Frame = -2

Query: 355 ITHLDSDLLAEIISRLAIKHMIACQCVSRSWHHVVSTICIPKITSL----PVYGLLFNTR 188
           +  L  D++ EI+ RL +K ++    VS++WH ++S +C P  ++     P   L   + 
Sbjct: 2   VVQLSDDMIIEILCRLPVKMVMRLNAVSKAWHRLISNVCAPLFSAAAAAHPSGFLFLCSF 61

Query: 187 RILDGPGIEKGPWSFACINAFNEKVSLPNTSLVESCLGRS----------LPFDPSPDSF 38
           +I+ G G             F    S P+   V  C+G++          LPF  S D +
Sbjct: 62  QIIGGLGY------------FAAYASYPD---VRDCVGQTDGFVDSYACMLPFMLSSDHY 106

Query: 37  LDCCNGMLLF 8
            DCCNG+LLF
Sbjct: 107 FDCCNGLLLF 116


>ref|XP_002333768.1| predicted protein [Populus trichocarpa] gi|222838455|gb|EEE76820.1|
           predicted protein [Populus trichocarpa]
          Length = 280

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
 Frame = -2

Query: 346 LDSDLLAEIISRLAI-KHMIACQCVSRSWHHVVSTICIPKIT-SLPVYGLLFNTRRILDG 173
           L  D+L EI+ R+   KH+I  + V + W+++++  C+PKI+ S P++G +++  R+   
Sbjct: 25  LPDDVLVEILCRVTDGKHLIRLKSVCKCWNNLITDACVPKISASSPLHGFIYHALRVSSR 84

Query: 172 PG-IEKGPWSFACINAFNEKVSLPNTSLVESCLGRSLPFDPSPDSFLDCCNGMLLFFD 2
              I+  P       A    V+      V+S     LPFD +   FLDCCNG+LLF +
Sbjct: 85  KTYIDYIPC------AMTPAVAPEPHEFVKS-YSSLLPFDLARGDFLDCCNGLLLFVE 135


>ref|XP_002327345.1| predicted protein [Populus trichocarpa] gi|222835715|gb|EEE74150.1|
           predicted protein [Populus trichocarpa]
          Length = 391

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
 Frame = -2

Query: 346 LDSDLLAEIISRLAIKHMIACQCVSRSWHHVVSTICIPKITSL----PVYGLLFNTRRIL 179
           L  D++ EI+ RL +K ++  + VS++WH ++S +C P  ++     P   L   + +I+
Sbjct: 5   LPDDMIVEILCRLPVKVVMRLKVVSKAWHRLISNVCAPLFSAAAAAHPSGFLFLCSFQII 64

Query: 178 DGPGIEKGPWSFACINAFNEKVSLPNTSLVESCLGRS----------LPFDPSPDSFLDC 29
            G G             F    S P+   V  C+G++          LPF  S D + DC
Sbjct: 65  GGLGY------------FAAYASYPD---VRDCVGQTDGFVDSYACMLPFMLSSDHYFDC 109

Query: 28  CNGMLLF 8
           CNG+LLF
Sbjct: 110 CNGLLLF 116


Top