BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00014467
         (929 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277679.1| PREDICTED: transcription initiation factor I...   399   e-109
ref|XP_002269045.1| PREDICTED: transcription initiation factor I...   398   e-108
emb|CAN74371.1| hypothetical protein VITISV_004775 [Vitis vinifera]   398   e-108
ref|XP_002284342.1| PREDICTED: transcription initiation factor I...   397   e-108
ref|XP_002513521.1| transcription initiation factor iib, putativ...   396   e-108

>ref|XP_002277679.1| PREDICTED: transcription initiation factor IIB [Vitis vinifera]
           gi|297734946|emb|CBI17180.3| unnamed protein product
           [Vitis vinifera]
          Length = 314

 Score =  399 bits (1024), Expect = e-109
 Identities = 203/256 (79%), Positives = 216/256 (84%)
 Frame = +3

Query: 3   VGGPSNPLLTDGGLSTVISKPNXXXXXXXXXXXXXXRWQNRGSNPDRSLIMAFKSIAVMS 182
           VGGPSNPLL DGGLST+ISKP+              RWQNRGSNPDRSLI AFK+IA M 
Sbjct: 59  VGGPSNPLLADGGLSTLISKPSNGGPSNDFLSSSLGRWQNRGSNPDRSLIQAFKTIATMC 118

Query: 183 DRLNLVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVAN 362
           DRL LVATIKD ANEIYKKVEDQK +RGRNQDAILAAC+YIACRQEDKPRTVKEICSVAN
Sbjct: 119 DRLGLVATIKDLANEIYKKVEDQKPLRGRNQDAILAACIYIACRQEDKPRTVKEICSVAN 178

Query: 363 GATKKEVGRAKEYIVKQLEVEMGQSVEMGAIHAGDFLRRFCSHLGMANQSVKAAQEAVQK 542
           GATKKE+GRAKEYIVKQLEVEMGQS+EMG IHAGDFLRRFCSHLGM NQ+VKAAQEAVQK
Sbjct: 179 GATKKEIGRAKEYIVKQLEVEMGQSMEMGTIHAGDFLRRFCSHLGMTNQAVKAAQEAVQK 238

Query: 543 SEELDIRRXXXXXXXXXXXXXXQLSDERKLLKDISLATGVAEGTIRNSYKDLYPYVSRLI 722
           SEELDIRR              QLSD++KLLKDISLATGVAEGTIRNSYKDLYPY SR+I
Sbjct: 239 SEELDIRRSPISVAAAVIYMITQLSDDKKLLKDISLATGVAEGTIRNSYKDLYPYASRII 298

Query: 723 PSWYAKEEDIKNLSSP 770
           PS YAKEED++NL SP
Sbjct: 299 PSSYAKEEDLRNLCSP 314


>ref|XP_002269045.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
           gi|296088031|emb|CBI35314.3| unnamed protein product
           [Vitis vinifera]
          Length = 312

 Score =  398 bits (1022), Expect = e-108
 Identities = 202/256 (78%), Positives = 217/256 (84%)
 Frame = +3

Query: 3   VGGPSNPLLTDGGLSTVISKPNXXXXXXXXXXXXXXRWQNRGSNPDRSLIMAFKSIAVMS 182
           VGGPSNPLLTDGGLSTVI+KPN              RWQNRGSNPDR LI+AFK+IA MS
Sbjct: 59  VGGPSNPLLTDGGLSTVIAKPNGVSGDFLSSSLG--RWQNRGSNPDRGLILAFKTIATMS 116

Query: 183 DRLNLVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVAN 362
           DRL LVATIKDRANEIYKKVEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVAN
Sbjct: 117 DRLGLVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVAN 176

Query: 363 GATKKEVGRAKEYIVKQLEVEMGQSVEMGAIHAGDFLRRFCSHLGMANQSVKAAQEAVQK 542
           GATKKE+GRAKEYIVKQLE E GQSVEMG IHAGDF+RRFCS+LGM NQ VKAAQEAVQK
Sbjct: 177 GATKKEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCSNLGMTNQVVKAAQEAVQK 236

Query: 543 SEELDIRRXXXXXXXXXXXXXXQLSDERKLLKDISLATGVAEGTIRNSYKDLYPYVSRLI 722
           SEE DIRR              QLSDE+KLL+DIS+ATGVAEGTIRNSYKDLYP++SR+I
Sbjct: 237 SEEFDIRRSPVSIAAAVIYIITQLSDEKKLLRDISIATGVAEGTIRNSYKDLYPHISRII 296

Query: 723 PSWYAKEEDIKNLSSP 770
           PSWYAKEED++NL SP
Sbjct: 297 PSWYAKEEDLRNLCSP 312


>emb|CAN74371.1| hypothetical protein VITISV_004775 [Vitis vinifera]
          Length = 312

 Score =  398 bits (1022), Expect = e-108
 Identities = 202/256 (78%), Positives = 217/256 (84%)
 Frame = +3

Query: 3   VGGPSNPLLTDGGLSTVISKPNXXXXXXXXXXXXXXRWQNRGSNPDRSLIMAFKSIAVMS 182
           VGGPSNPLLTDGGLSTVI+KPN              RWQNRGSNPDR LI+AFK+IA MS
Sbjct: 59  VGGPSNPLLTDGGLSTVIAKPNGVSGDFLSSSLG--RWQNRGSNPDRGLILAFKTIATMS 116

Query: 183 DRLNLVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVAN 362
           DRL LVATIKDRANEIYKKVEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVAN
Sbjct: 117 DRLGLVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVAN 176

Query: 363 GATKKEVGRAKEYIVKQLEVEMGQSVEMGAIHAGDFLRRFCSHLGMANQSVKAAQEAVQK 542
           GATKKE+GRAKEYIVKQLE E GQSVEMG IHAGDF+RRFCS+LGM NQ VKAAQEAVQK
Sbjct: 177 GATKKEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCSNLGMTNQVVKAAQEAVQK 236

Query: 543 SEELDIRRXXXXXXXXXXXXXXQLSDERKLLKDISLATGVAEGTIRNSYKDLYPYVSRLI 722
           SEE DIRR              QLSDE+KLL+DIS+ATGVAEGTIRNSYKDLYP++SR+I
Sbjct: 237 SEEFDIRRSPVSIAAAVIYIITQLSDEKKLLRDISIATGVAEGTIRNSYKDLYPHISRII 296

Query: 723 PSWYAKEEDIKNLSSP 770
           PSWYAKEED++NL SP
Sbjct: 297 PSWYAKEEDLRNLCSP 312


>ref|XP_002284342.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
           gi|297739630|emb|CBI29812.3| unnamed protein product
           [Vitis vinifera]
          Length = 312

 Score =  397 bits (1019), Expect = e-108
 Identities = 201/256 (78%), Positives = 217/256 (84%)
 Frame = +3

Query: 3   VGGPSNPLLTDGGLSTVISKPNXXXXXXXXXXXXXXRWQNRGSNPDRSLIMAFKSIAVMS 182
           VGGPSNPLLTDGGLSTVI+KPN              RWQNRGSNPDR LI+AFK+IA MS
Sbjct: 59  VGGPSNPLLTDGGLSTVIAKPNGVSGDFLSSSLG--RWQNRGSNPDRGLILAFKTIATMS 116

Query: 183 DRLNLVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVAN 362
           DRL LVATIKDRANEIYKKVEDQKS RGRNQDA+LAACLYIACRQEDKPRTVKEICSVAN
Sbjct: 117 DRLGLVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVAN 176

Query: 363 GATKKEVGRAKEYIVKQLEVEMGQSVEMGAIHAGDFLRRFCSHLGMANQSVKAAQEAVQK 542
           GATKKE+GRAKEYIVKQLE E GQSVEMG IHAGDF+RRFCS+LGM NQ VKAAQEAVQK
Sbjct: 177 GATKKEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCSNLGMTNQVVKAAQEAVQK 236

Query: 543 SEELDIRRXXXXXXXXXXXXXXQLSDERKLLKDISLATGVAEGTIRNSYKDLYPYVSRLI 722
           SEE DIRR              QLSDE+KLL+DIS+ATGVAEGTIRNSYKDLYP++S++I
Sbjct: 237 SEEFDIRRSPVSIAAAVIYIITQLSDEKKLLRDISIATGVAEGTIRNSYKDLYPHISKII 296

Query: 723 PSWYAKEEDIKNLSSP 770
           PSWYAKEED++NL SP
Sbjct: 297 PSWYAKEEDLRNLCSP 312


>ref|XP_002513521.1| transcription initiation factor iib, putative [Ricinus communis]
           gi|223547429|gb|EEF48924.1| transcription initiation
           factor iib, putative [Ricinus communis]
          Length = 312

 Score =  396 bits (1018), Expect = e-108
 Identities = 202/256 (78%), Positives = 216/256 (84%)
 Frame = +3

Query: 3   VGGPSNPLLTDGGLSTVISKPNXXXXXXXXXXXXXXRWQNRGSNPDRSLIMAFKSIAVMS 182
           VGGPSNPLL DGGLSTVISKP               RWQNRGSNPDRSLI AFK+IA MS
Sbjct: 59  VGGPSNPLLADGGLSTVISKPTGASGDFLTSSLG--RWQNRGSNPDRSLIQAFKTIATMS 116

Query: 183 DRLNLVATIKDRANEIYKKVEDQKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVAN 362
           DRL LVATIKDRANEIYKKVEDQK +RGRNQDA+LAACLYIACRQEDKPRTVKEICSVAN
Sbjct: 117 DRLGLVATIKDRANEIYKKVEDQKPLRGRNQDAVLAACLYIACRQEDKPRTVKEICSVAN 176

Query: 363 GATKKEVGRAKEYIVKQLEVEMGQSVEMGAIHAGDFLRRFCSHLGMANQSVKAAQEAVQK 542
           GATKKE+GRAKEYIVKQLEVE+GQS+EMG IHAGDFLRRFCSHLGM NQ+VKAAQEAV+K
Sbjct: 177 GATKKEIGRAKEYIVKQLEVELGQSMEMGTIHAGDFLRRFCSHLGMNNQAVKAAQEAVKK 236

Query: 543 SEELDIRRXXXXXXXXXXXXXXQLSDERKLLKDISLATGVAEGTIRNSYKDLYPYVSRLI 722
           SEELDIRR              QLS+E+KLLKDIS +TGVAEGTIRNSYKDLYPY SR++
Sbjct: 237 SEELDIRRSPISIAAAIIYMITQLSEEKKLLKDISTSTGVAEGTIRNSYKDLYPYASRIV 296

Query: 723 PSWYAKEEDIKNLSSP 770
           PSWYAKEED+ NL SP
Sbjct: 297 PSWYAKEEDLINLCSP 312