BLASTX nr result
ID: Coptis21_contig00014195
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00014195
(1215 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274318.1| PREDICTED: pentatricopeptide repeat-containi... 375 e-101
ref|XP_004140747.1| PREDICTED: pentatricopeptide repeat-containi... 363 4e-98
ref|NP_567622.1| pentatricopeptide repeat-containing protein [Ar... 339 7e-91
ref|XP_002867860.1| EMB1417 [Arabidopsis lyrata subsp. lyrata] g... 334 3e-89
ref|XP_002513638.1| pentatricopeptide repeat-containing protein,... 332 1e-88
>ref|XP_002274318.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21190
[Vitis vinifera] gi|302143769|emb|CBI22630.3| unnamed
protein product [Vitis vinifera]
Length = 295
Score = 375 bits (962), Expect = e-101
Identities = 190/300 (63%), Positives = 224/300 (74%)
Frame = +3
Query: 3 MLTLKYSSVFLSTKLDSVNISCKPSSVIVCAAKGPRPRYPRVWKSRTKIGTISKSKKLVD 182
ML L+YS ++ +LD+V I P S++VC AKGPRPRYPRVWK+R +IGTISKS KLVD
Sbjct: 1 MLCLRYSPATITRRLDAVEIPKNPRSIVVCGAKGPRPRYPRVWKTRQRIGTISKSAKLVD 60
Query: 183 CIKGLSNVKEEVYGALDAFIAWELEFPLITVXXXXXXXXXXXXXXRIIQVTKWMLSKGQG 362
CIKGLSNVKEEVYGALD+FIAWELEFPLITV RIIQVTKWMLSKGQG
Sbjct: 61 CIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEDQKEWKRIIQVTKWMLSKGQG 120
Query: 363 RTKGSYFMLLNALAEDGRLDEAEELWGQVFSENLESLPRIFFNKMISIYYGRGMHDKMFE 542
RT GSYF LLNALAEDGRLDEAEELW ++FSENLESLPR+F++KMISIYY R MH+KMFE
Sbjct: 121 RTMGSYFTLLNALAEDGRLDEAEELWTKLFSENLESLPRVFYDKMISIYYRRDMHEKMFE 180
Query: 543 VFADMEELGVRPNDAIVSMVGDVFQKLEMLDKYEKLKQKYPLSKWEYRYFKGKRVKVLAK 722
+FADMEELG+RPN +IV MVGDVFQKL MLDKYEKL++KYP KWEYRY KGKRV++ AK
Sbjct: 181 IFADMEELGIRPNTSIVKMVGDVFQKLGMLDKYEKLQKKYPPPKWEYRYIKGKRVRIRAK 240
Query: 723 QVSLLEEAKHKNGYIEEAKDNLSEPDEEDVNTDVDAVNDEANNHVNEFDEEVN*CLKEAD 902
+ D+ E + +D V+ +ND+ N NE +E + + +AD
Sbjct: 241 --------------LTGESDDPGEAESDDPGEAVNEINDKTENS-NEMHDEADSSVDDAD 285
>ref|XP_004140747.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21190-like [Cucumis sativus]
Length = 331
Score = 363 bits (933), Expect = 4e-98
Identities = 183/283 (64%), Positives = 221/283 (78%), Gaps = 3/283 (1%)
Frame = +3
Query: 3 MLTLKYSSVFLSTKLDSVNISCKPSSVIVCAAKGPRPRYPRVWKSRTKIGTISKSKKLVD 182
MLTL Y+ S +++SVN S PSS +VCAAKGPRPRYPRVWK++ +IGTISK+ KLVD
Sbjct: 19 MLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVD 78
Query: 183 CIKGLSNVKEEVYGALDAFIAWELEFPLITVXXXXXXXXXXXXXXRIIQVTKWMLSKGQG 362
C+KGLSNVKEEVYGALD+FIAWELEFPLITV RIIQ+TKWMLSKGQG
Sbjct: 79 CVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQG 138
Query: 363 RTKGSYFMLLNALAEDGRLDEAEELWGQVFSENLESLPRIFFNKMISIYYGRGMHDKMFE 542
RT GSYF LLNALAEDGRLDEAEELW ++FS++LES+PRIFF+KMIS+YY + MHDK+FE
Sbjct: 139 RTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKLFE 198
Query: 543 VFADMEELGVRPNDAIVSMVGDVFQKLEMLDKYEKLKQKYPLSKWEYRYFKGKRVKVLAK 722
VFADMEELGV+PN AIV+ VG+VFQ+L MLDKY+KL +KYP KWEYRY KGKRVK+ AK
Sbjct: 199 VFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIRAK 258
Query: 723 QVSLLEEAKHKNGYIEEAK---DNLSEPDEEDVNTDVDAVNDE 842
+S E NG E AK + + DE ++ ++ ++ D+
Sbjct: 259 YLS--ENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDD 299
>ref|NP_567622.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75246109|sp|Q8LG95.1|PP332_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At4g21190; AltName: Full=Protein EMBRYO DEFECTIVE 1417
gi|21618230|gb|AAM67280.1| unknown [Arabidopsis
thaliana] gi|51969238|dbj|BAD43311.1| putative protein
[Arabidopsis thaliana] gi|51971351|dbj|BAD44340.1|
putative protein [Arabidopsis thaliana]
gi|51971365|dbj|BAD44347.1| putative protein
[Arabidopsis thaliana] gi|332659017|gb|AEE84417.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 307
Score = 339 bits (870), Expect = 7e-91
Identities = 177/276 (64%), Positives = 208/276 (75%), Gaps = 7/276 (2%)
Frame = +3
Query: 3 MLTLKYSSVFL-------STKLDSVNISCKPSSVIVCAAKGPRPRYPRVWKSRTKIGTIS 161
ML+L+YS +L STKL + KP++V+VCAA+GPRPR PRVWK+R +IGTIS
Sbjct: 1 MLSLRYSLPYLLLQTRESSTKL----FTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTIS 56
Query: 162 KSKKLVDCIKGLSNVKEEVYGALDAFIAWELEFPLITVXXXXXXXXXXXXXXRIIQVTKW 341
K+ K++ CIKGLSNVKEEVYGALD+FIAWELEFPL+ V +IIQVTKW
Sbjct: 57 KAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKW 116
Query: 342 MLSKGQGRTKGSYFMLLNALAEDGRLDEAEELWGQVFSENLESLPRIFFNKMISIYYGRG 521
MLSKGQGRT G+YF LLNALAED RLDEAEELW ++F E+LE PR FFNKMISIYY R
Sbjct: 117 MLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRD 176
Query: 522 MHDKMFEVFADMEELGVRPNDAIVSMVGDVFQKLEMLDKYEKLKQKYPLSKWEYRYFKGK 701
MH K+FEVFADMEELGV+PN AIVSMVG VF KLEM DKYEKL +KYP +WE+RY KG+
Sbjct: 177 MHQKLFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGR 236
Query: 702 RVKVLAKQVSLLEEAKHKNGYIEEAKDNLSEPDEED 809
RVKV AKQ++ L E + E+ DN E +EED
Sbjct: 237 RVKVKAKQLNELSEGEGGLSSDEDKIDNEIESEEED 272
>ref|XP_002867860.1| EMB1417 [Arabidopsis lyrata subsp. lyrata]
gi|297313696|gb|EFH44119.1| EMB1417 [Arabidopsis lyrata
subsp. lyrata]
Length = 317
Score = 334 bits (856), Expect = 3e-89
Identities = 174/279 (62%), Positives = 211/279 (75%), Gaps = 3/279 (1%)
Frame = +3
Query: 3 MLTLKYSSVFL--STKLDSVNI-SCKPSSVIVCAAKGPRPRYPRVWKSRTKIGTISKSKK 173
ML+L+YS +L TK S + S +P++V+VCAA+GPRPR PRVWK+R +IGTISK+ K
Sbjct: 1 MLSLRYSLPYLLLQTKESSTKLFSKRPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60
Query: 174 LVDCIKGLSNVKEEVYGALDAFIAWELEFPLITVXXXXXXXXXXXXXXRIIQVTKWMLSK 353
++ CIKGLSNVKEEVYGALD+FIAWELEFPL+ V +IIQVTKWMLSK
Sbjct: 61 MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120
Query: 354 GQGRTKGSYFMLLNALAEDGRLDEAEELWGQVFSENLESLPRIFFNKMISIYYGRGMHDK 533
GQGRT G+YF LLNALAED RLDEAEELW ++F E+LE PR FFNKMISIYY R MH K
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180
Query: 534 MFEVFADMEELGVRPNDAIVSMVGDVFQKLEMLDKYEKLKQKYPLSKWEYRYFKGKRVKV 713
+FEVFADMEELGV+PN AIVSMVG VF KLEM DKYEKL +KYP +WE+RY KG+RVKV
Sbjct: 181 LFEVFADMEELGVKPNIAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240
Query: 714 LAKQVSLLEEAKHKNGYIEEAKDNLSEPDEEDVNTDVDA 830
AKQ++ L E + LS DE+ ++T++++
Sbjct: 241 KAKQLNEL----------SEGEGGLSS-DEDKIDTEIES 268
>ref|XP_002513638.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223547546|gb|EEF49041.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 359
Score = 332 bits (851), Expect = 1e-88
Identities = 178/308 (57%), Positives = 222/308 (72%), Gaps = 8/308 (2%)
Frame = +3
Query: 3 MLTLKYSSVFLSTKLDSVNISCKPSSVIVCAAKGPRPRYPRVWKSRTKIGTISKSKKLVD 182
ML L+ +ST+ + + S K +S +V A KG RPR PRVWK++ +IGTISKS KLV+
Sbjct: 35 MLCLRPPLPLISTRFEVIKFS-KSTSSVVSALKGARPRAPRVWKTKPRIGTISKSAKLVE 93
Query: 183 CIKGLSNVKEEVYGALDAFIAWELEFPLITVXXXXXXXXXXXXXXRIIQVTKWMLSKGQG 362
CIKGLSNVKEEVYGALD+ IAWELEFPLI V RIIQV KWMLSKGQG
Sbjct: 94 CIKGLSNVKEEVYGALDSLIAWELEFPLIAVKKALKTLENEQEWKRIIQVIKWMLSKGQG 153
Query: 363 RTKGSYFMLLNALAEDGRLDEAEELWGQVFSENLESLPRIFFNKMISIYYGRGMHDKMFE 542
RT G+YF LLNALAED RLDEAEELW ++FS+NLE PR FF+KMISIYY R MH+KMFE
Sbjct: 154 RTMGTYFTLLNALAEDERLDEAEELWTKLFSDNLEGTPRNFFDKMISIYYKREMHEKMFE 213
Query: 543 VFADMEELGVRPNDAIVSMVGDVFQKLEMLDKYEKLKQKYPLSKWEYRYFKGKRVKVLAK 722
+FADMEELGVRP+ +IV+M+G VFQKL MLDKY KLK+KYP KWEYRY KGKRV++ AK
Sbjct: 214 IFADMEELGVRPSVSIVNMMGSVFQKLGMLDKYRKLKKKYPPPKWEYRYIKGKRVRLRAK 273
Query: 723 QVSLL---EEAKHKNGYIEEAKDNLSEPD-----EEDVNTDVDAVNDEANNHVNEFDEEV 878
QV+ E+ ++N + L+E D E +V D++ +++E++ +E + E
Sbjct: 274 QVNEFLGANESVNQNAETPYISNKLNEEDNTKLNEANVEEDLNELDEESSTKSSEANAEA 333
Query: 879 N*CLKEAD 902
+ CL EA+
Sbjct: 334 S-CLNEAN 340