BLASTX nr result

ID: Coptis21_contig00014162 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00014162
         (200 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310677.1| predicted protein [Populus trichocarpa] gi|2...    60   2e-07
ref|XP_002267672.2| PREDICTED: probable LRR receptor-like serine...    56   3e-06
ref|XP_003535079.1| PREDICTED: probable LRR receptor-like serine...    55   6e-06
emb|CBI20016.3| unnamed protein product [Vitis vinifera]               55   6e-06

>ref|XP_002310677.1| predicted protein [Populus trichocarpa] gi|222853580|gb|EEE91127.1|
            predicted protein [Populus trichocarpa]
          Length = 1036

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 31/62 (50%), Positives = 42/62 (67%)
 Frame = -1

Query: 200  GDIQVSTVVSKPSYLTDWQFNDISTFVSDDGTSDSLTSNAPTSQFDSSSNASMVFGGDNT 21
            GDI+V++V SKP YLTDW+F+D ST++SDD T  S      TS ++SS+  S+V    N 
Sbjct: 965  GDIEVNSVTSKPGYLTDWKFDDTSTYMSDDATRAS-----DTSHYNSSTRTSLV----NN 1015

Query: 20   PK 15
            PK
Sbjct: 1016 PK 1017


>ref|XP_002267672.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase
            At1g56130-like [Vitis vinifera]
          Length = 1028

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/66 (42%), Positives = 40/66 (60%)
 Frame = -1

Query: 200  GDIQVSTVVSKPSYLTDWQFNDISTFVSDDGTSDSLTSNAPTSQFDSSSNASMVFGGDNT 21
            GDI+VS V +KP YLTDW+FND S+F+S++            S F+SS++ SM    D +
Sbjct: 964  GDIEVSRVTTKPGYLTDWKFNDASSFMSEN------------SHFNSSTSISMAADADRS 1011

Query: 20   PKVVTR 3
            P   T+
Sbjct: 1012 PVTATK 1017


>ref|XP_003535079.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase
            At1g56130-like [Glycine max]
          Length = 1027

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 28/61 (45%), Positives = 42/61 (68%)
 Frame = -1

Query: 200  GDIQVSTVVSKPSYLTDWQFNDISTFVSDDGTSDSLTSNAPTSQFDSSSNASMVFGGDNT 21
            GDI+VSTV S+P YLTDW+F+D  +F+++  T  S      TS ++SS++ S+V G D +
Sbjct: 956  GDIEVSTVTSRPGYLTDWKFDDEISFMTEVATKGS-----DTSFYNSSASFSIVGGADYS 1010

Query: 20   P 18
            P
Sbjct: 1011 P 1011


>emb|CBI20016.3| unnamed protein product [Vitis vinifera]
          Length = 2193

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 25/54 (46%), Positives = 37/54 (68%)
 Frame = -1

Query: 200  GDIQVSTVVSKPSYLTDWQFNDISTFVSDDGTSDSLTSNAPTSQFDSSSNASMV 39
            GDI+VS V +KP YLTDW+FND S+F+S++   +S TS +  +  D + NA  +
Sbjct: 1042 GDIEVSRVTTKPGYLTDWKFNDASSFMSENSHFNSSTSISMAADADLAKNAPYI 1095


Top