BLASTX nr result

ID: Coptis21_contig00014099 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00014099
         (324 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_567526.4| uncharacterized protein [Arabidopsis thaliana] ...    44   7e-08
ref|NP_001190749.1| uncharacterized protein [Arabidopsis thalian...    44   7e-08
emb|CAB10506.1| hypothetical protein [Arabidopsis thaliana] gi|7...    44   7e-08
ref|XP_002870114.1| hypothetical protein ARALYDRAFT_493150 [Arab...    45   2e-07
gb|ABD65133.1| hypothetical protein 40.t00008 [Brassica oleracea]      43   3e-06

>ref|NP_567526.4| uncharacterized protein [Arabidopsis thaliana]
           gi|16323155|gb|AAL15312.1| AT4g17250/dl4660w
           [Arabidopsis thaliana] gi|23506021|gb|AAN28870.1|
           At4g17250/dl4660w [Arabidopsis thaliana]
           gi|332658469|gb|AEE83869.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 741

 Score = 44.3 bits (103), Expect(2) = 7e-08
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
 Frame = +3

Query: 153 RDQFAKLSGAALVRIC-------IGLNDESEFLTNLLALSIFVITIVVNVCIQIYTGVIV 311
           +DQ AKLS +  V          +G     + L NL AL I VIT VVN+CIQ+ TG I 
Sbjct: 84  QDQLAKLSSSVFVCTVMANSMPSLGYMVTQDLLMNLTALGILVITDVVNICIQLGTGAIY 143

Query: 312 LF 317
           +F
Sbjct: 144 VF 145



 Score = 37.0 bits (84), Expect(2) = 7e-08
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 68  YIAGASFFCVLSMLNDVVRGFRDKKHWIP 154
           Y+A AS  C ++M +D++ GFR +K W P
Sbjct: 24  YVAAASLICGVAMFSDLLHGFRHRKFWFP 52


>ref|NP_001190749.1| uncharacterized protein [Arabidopsis thaliana]
           gi|332658470|gb|AEE83870.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 647

 Score = 44.3 bits (103), Expect(2) = 7e-08
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
 Frame = +3

Query: 153 RDQFAKLSGAALVRIC-------IGLNDESEFLTNLLALSIFVITIVVNVCIQIYTGVIV 311
           +DQ AKLS +  V          +G     + L NL AL I VIT VVN+CIQ+ TG I 
Sbjct: 84  QDQLAKLSSSVFVCTVMANSMPSLGYMVTQDLLMNLTALGILVITDVVNICIQLGTGAIY 143

Query: 312 LF 317
           +F
Sbjct: 144 VF 145



 Score = 37.0 bits (84), Expect(2) = 7e-08
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 68  YIAGASFFCVLSMLNDVVRGFRDKKHWIP 154
           Y+A AS  C ++M +D++ GFR +K W P
Sbjct: 24  YVAAASLICGVAMFSDLLHGFRHRKFWFP 52


>emb|CAB10506.1| hypothetical protein [Arabidopsis thaliana]
           gi|7268477|emb|CAB78728.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 605

 Score = 44.3 bits (103), Expect(2) = 7e-08
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
 Frame = +3

Query: 153 RDQFAKLSGAALVRIC-------IGLNDESEFLTNLLALSIFVITIVVNVCIQIYTGVIV 311
           +DQ AKLS +  V          +G     + L NL AL I VIT VVN+CIQ+ TG I 
Sbjct: 84  QDQLAKLSSSVFVCTVMANSMPSLGYMVTQDLLMNLTALGILVITDVVNICIQLGTGAIY 143

Query: 312 LF 317
           +F
Sbjct: 144 VF 145



 Score = 37.0 bits (84), Expect(2) = 7e-08
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 68  YIAGASFFCVLSMLNDVVRGFRDKKHWIP 154
           Y+A AS  C ++M +D++ GFR +K W P
Sbjct: 24  YVAAASLICGVAMFSDLLHGFRHRKFWFP 52


>ref|XP_002870114.1| hypothetical protein ARALYDRAFT_493150 [Arabidopsis lyrata subsp.
           lyrata] gi|297315950|gb|EFH46373.1| hypothetical protein
           ARALYDRAFT_493150 [Arabidopsis lyrata subsp. lyrata]
          Length = 414

 Score = 45.4 bits (106), Expect(2) = 2e-07
 Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
 Frame = +3

Query: 153 RDQFAKLSGAALVRIC-------IGLNDESEFLTNLLALSIFVITIVVNVCIQIYTGVIV 311
           +DQ AKLS +  V          +G     + L NL+AL I VIT VVN+CIQ+ TG I 
Sbjct: 84  QDQLAKLSSSVFVCTVMANSMPSLGFMVTQDLLMNLVALGILVITDVVNICIQLGTGAIY 143

Query: 312 LF 317
           +F
Sbjct: 144 VF 145



 Score = 34.3 bits (77), Expect(2) = 2e-07
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 68  YIAGASFFCVLSMLNDVVRGFRDKKHWIP 154
           Y+A AS  C ++M +D++ G R +K W P
Sbjct: 24  YVAAASVICGVAMFSDLLHGLRHRKFWFP 52


>gb|ABD65133.1| hypothetical protein 40.t00008 [Brassica oleracea]
          Length = 742

 Score = 42.7 bits (99), Expect(2) = 3e-06
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
 Frame = +3

Query: 153 RDQFAKLSGAALVRIC-------IGLNDESEFLTNLLALSIFVITIVVNVCIQIYTGVIV 311
           +DQ AKLS +    +        +G     + L NL+AL I V+T V N+CIQ+ TG I 
Sbjct: 84  QDQLAKLSSSVFFCVVMANSMPSLGFMVTRDLLMNLVALGILVVTDVANICIQLGTGAIY 143

Query: 312 LF 317
           +F
Sbjct: 144 VF 145



 Score = 33.1 bits (74), Expect(2) = 3e-06
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 68  YIAGASFFCVLSMLNDVVRGFRDKKHWIP 154
           Y+A AS  C  +M  D++  FR +K+W P
Sbjct: 24  YVATASLICGAAMFADLLHAFRHRKYWFP 52


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