BLASTX nr result
ID: Coptis21_contig00014060
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00014060
(1545 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBW45782.1| ORW1943Ba0077G13.10 [Oryza rufipogon] 94 7e-17
gb|EEE61124.1| hypothetical protein OsJ_15051 [Oryza sativa Japo... 94 7e-17
ref|NP_001052987.1| Os04g0459800 [Oryza sativa Japonica Group] g... 94 7e-17
emb|CAD40979.2| OSJNBa0072F16.4 [Oryza sativa Japonica Group] gi... 94 7e-17
ref|XP_003633851.1| PREDICTED: ATP-dependent RNA helicase SUPV3L... 93 2e-16
>emb|CBW45782.1| ORW1943Ba0077G13.10 [Oryza rufipogon]
Length = 734
Score = 94.4 bits (233), Expect = 7e-17
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 20/125 (16%)
Frame = -3
Query: 556 GWPKGSTRNDTELLDLETKHQILSMYLWLSFHFKIGRHYRMQRKLHQWQQIDIAELLGKS 377
G PKGS +NDTELLDLETKHQ+LSMYLWLS HF+ +Q+ + I+IA+LL KS
Sbjct: 606 GMPKGSAKNDTELLDLETKHQVLSMYLWLSHHFEEDHFPHVQKA--EEMSINIADLLAKS 663
Query: 376 IMNSNWKPETRQATNLKK--------------------GEGYARSLSPVKAFQKKTSEET 257
+ ++WKP +RQ ++ +GY RS+S +K F +K +
Sbjct: 664 LAKASWKPTSRQQAKPRRENEEDNDVEQASDDNAKNDSEDGYERSISRIKPFMRKRLDRL 723
Query: 256 SQSNS 242
SQ S
Sbjct: 724 SQDPS 728
Score = 48.1 bits (113), Expect(4) = 2e-12
Identities = 28/65 (43%), Positives = 37/65 (56%)
Frame = -1
Query: 1497 FLPLVVETNTLLGDLRNVQSGDCVVVIFQEQKYTR*RRRLRGGHCYGVVIYETVQPVVCR 1318
F PLVVE TLLGDL+NV+SGDC+V + + + + VIY + P R
Sbjct: 348 FKPLVVEAKTLLGDLKNVRSGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRR 407
Query: 1317 EQAKL 1303
+QAKL
Sbjct: 408 QQAKL 412
Score = 42.7 bits (99), Expect(4) = 2e-12
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = -1
Query: 996 TLFVNGLARTLRSEDLCYLIECLDQPFLQVKKVGVSP*VEHACSAVVK 853
+++ +GL T +DL YLI+CL QPF + KKVG+ P E S ++
Sbjct: 473 SIYPDGLTTTFLLDDLDYLIQCLQQPFEEAKKVGLFPCFEQVESFAIQ 520
Score = 25.0 bits (53), Expect(4) = 2e-12
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 1196 HDFLVASEVVGTSLK*TLKIVVSYTL 1119
+D LVAS+ VG L ++ VV Y+L
Sbjct: 420 YDVLVASDAVGMGLNLNIRRVVFYSL 445
Score = 22.7 bits (47), Expect(4) = 2e-12
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = -3
Query: 1078 FYSYFK----RELPVLWTLVKQIARRASCLGNTF 989
FYS K R +PV + VKQIA RA G+ +
Sbjct: 442 FYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIY 475
>gb|EEE61124.1| hypothetical protein OsJ_15051 [Oryza sativa Japonica Group]
Length = 700
Score = 94.4 bits (233), Expect = 7e-17
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 20/125 (16%)
Frame = -3
Query: 556 GWPKGSTRNDTELLDLETKHQILSMYLWLSFHFKIGRHYRMQRKLHQWQQIDIAELLGKS 377
G PKGS +NDTELLDLETKHQ+LSMYLWLS HF+ +Q+ + I+IA+LL KS
Sbjct: 572 GMPKGSAKNDTELLDLETKHQVLSMYLWLSHHFEEDHFPHVQKA--EEMSINIADLLAKS 629
Query: 376 IMNSNWKPETRQATNLKK--------------------GEGYARSLSPVKAFQKKTSEET 257
+ ++WKP +RQ ++ +GY RS+S +K F +K +
Sbjct: 630 LAKASWKPTSRQQAKPRRENEEDNDVEQASDDNAKNDSEDGYERSISRIKPFMRKRLDRP 689
Query: 256 SQSNS 242
SQ S
Sbjct: 690 SQDPS 694
Score = 48.1 bits (113), Expect(4) = 2e-12
Identities = 28/65 (43%), Positives = 37/65 (56%)
Frame = -1
Query: 1497 FLPLVVETNTLLGDLRNVQSGDCVVVIFQEQKYTR*RRRLRGGHCYGVVIYETVQPVVCR 1318
F PLVVE TLLGDL+NV+SGDC+V + + + + VIY + P R
Sbjct: 314 FKPLVVEAKTLLGDLKNVRSGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRR 373
Query: 1317 EQAKL 1303
+QAKL
Sbjct: 374 QQAKL 378
Score = 42.7 bits (99), Expect(4) = 2e-12
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = -1
Query: 996 TLFVNGLARTLRSEDLCYLIECLDQPFLQVKKVGVSP*VEHACSAVVK 853
+++ +GL T +DL YLI+CL QPF + KKVG+ P E S ++
Sbjct: 439 SIYPDGLTTTFLLDDLDYLIQCLQQPFEEAKKVGLFPCFEQVESFAIQ 486
Score = 25.0 bits (53), Expect(4) = 2e-12
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 1196 HDFLVASEVVGTSLK*TLKIVVSYTL 1119
+D LVAS+ VG L ++ VV Y+L
Sbjct: 386 YDVLVASDAVGMGLNLNIRRVVFYSL 411
Score = 22.7 bits (47), Expect(4) = 2e-12
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = -3
Query: 1078 FYSYFK----RELPVLWTLVKQIARRASCLGNTF 989
FYS K R +PV + VKQIA RA G+ +
Sbjct: 408 FYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIY 441
>ref|NP_001052987.1| Os04g0459800 [Oryza sativa Japonica Group]
gi|113564558|dbj|BAF14901.1| Os04g0459800 [Oryza sativa
Japonica Group]
Length = 609
Score = 94.4 bits (233), Expect = 7e-17
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 20/125 (16%)
Frame = -3
Query: 556 GWPKGSTRNDTELLDLETKHQILSMYLWLSFHFKIGRHYRMQRKLHQWQQIDIAELLGKS 377
G PKGS +NDTELLDLETKHQ+LSMYLWLS HF+ +Q+ + I+IA+LL KS
Sbjct: 481 GMPKGSAKNDTELLDLETKHQVLSMYLWLSHHFEEDHFPHVQKA--EEMSINIADLLAKS 538
Query: 376 IMNSNWKPETRQATNLKK--------------------GEGYARSLSPVKAFQKKTSEET 257
+ ++WKP +RQ ++ +GY RS+S +K F +K +
Sbjct: 539 LAKASWKPTSRQQAKPRRENEEDNDVEQASDDNAKNDSEDGYERSISRIKPFMRKRLDRP 598
Query: 256 SQSNS 242
SQ S
Sbjct: 599 SQDPS 603
Score = 48.1 bits (113), Expect(4) = 2e-12
Identities = 28/65 (43%), Positives = 37/65 (56%)
Frame = -1
Query: 1497 FLPLVVETNTLLGDLRNVQSGDCVVVIFQEQKYTR*RRRLRGGHCYGVVIYETVQPVVCR 1318
F PLVVE TLLGDL+NV+SGDC+V + + + + VIY + P R
Sbjct: 223 FKPLVVEAKTLLGDLKNVRSGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRR 282
Query: 1317 EQAKL 1303
+QAKL
Sbjct: 283 QQAKL 287
Score = 42.7 bits (99), Expect(4) = 2e-12
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = -1
Query: 996 TLFVNGLARTLRSEDLCYLIECLDQPFLQVKKVGVSP*VEHACSAVVK 853
+++ +GL T +DL YLI+CL QPF + KKVG+ P E S ++
Sbjct: 348 SIYPDGLTTTFLLDDLDYLIQCLQQPFEEAKKVGLFPCFEQVESFAIQ 395
Score = 25.0 bits (53), Expect(4) = 2e-12
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 1196 HDFLVASEVVGTSLK*TLKIVVSYTL 1119
+D LVAS+ VG L ++ VV Y+L
Sbjct: 295 YDVLVASDAVGMGLNLNIRRVVFYSL 320
Score = 22.7 bits (47), Expect(4) = 2e-12
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = -3
Query: 1078 FYSYFK----RELPVLWTLVKQIARRASCLGNTF 989
FYS K R +PV + VKQIA RA G+ +
Sbjct: 317 FYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIY 350
>emb|CAD40979.2| OSJNBa0072F16.4 [Oryza sativa Japonica Group]
gi|116310057|emb|CAH67079.1| OSIGBa0097P08.9 [Oryza
sativa Indica Group] gi|116310442|emb|CAH67447.1|
H0219H12.4 [Oryza sativa Indica Group]
Length = 734
Score = 94.4 bits (233), Expect = 7e-17
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 20/125 (16%)
Frame = -3
Query: 556 GWPKGSTRNDTELLDLETKHQILSMYLWLSFHFKIGRHYRMQRKLHQWQQIDIAELLGKS 377
G PKGS +NDTELLDLETKHQ+LSMYLWLS HF+ +Q+ + I+IA+LL KS
Sbjct: 606 GMPKGSAKNDTELLDLETKHQVLSMYLWLSHHFEEDHFPHVQKA--EEMSINIADLLAKS 663
Query: 376 IMNSNWKPETRQATNLKK--------------------GEGYARSLSPVKAFQKKTSEET 257
+ ++WKP +RQ ++ +GY RS+S +K F +K +
Sbjct: 664 LAKASWKPTSRQQAKPRRENEEDNDVEQASDDNAKNDSEDGYERSISRIKPFMRKRLDRP 723
Query: 256 SQSNS 242
SQ S
Sbjct: 724 SQDPS 728
Score = 48.1 bits (113), Expect(4) = 2e-12
Identities = 28/65 (43%), Positives = 37/65 (56%)
Frame = -1
Query: 1497 FLPLVVETNTLLGDLRNVQSGDCVVVIFQEQKYTR*RRRLRGGHCYGVVIYETVQPVVCR 1318
F PLVVE TLLGDL+NV+SGDC+V + + + + VIY + P R
Sbjct: 348 FKPLVVEAKTLLGDLKNVRSGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRR 407
Query: 1317 EQAKL 1303
+QAKL
Sbjct: 408 QQAKL 412
Score = 42.7 bits (99), Expect(4) = 2e-12
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = -1
Query: 996 TLFVNGLARTLRSEDLCYLIECLDQPFLQVKKVGVSP*VEHACSAVVK 853
+++ +GL T +DL YLI+CL QPF + KKVG+ P E S ++
Sbjct: 473 SIYPDGLTTTFLLDDLDYLIQCLQQPFEEAKKVGLFPCFEQVESFAIQ 520
Score = 25.0 bits (53), Expect(4) = 2e-12
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 1196 HDFLVASEVVGTSLK*TLKIVVSYTL 1119
+D LVAS+ VG L ++ VV Y+L
Sbjct: 420 YDVLVASDAVGMGLNLNIRRVVFYSL 445
Score = 22.7 bits (47), Expect(4) = 2e-12
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = -3
Query: 1078 FYSYFK----RELPVLWTLVKQIARRASCLGNTF 989
FYS K R +PV + VKQIA RA G+ +
Sbjct: 442 FYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIY 475
>ref|XP_003633851.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Vitis vinifera]
Length = 806
Score = 92.8 bits (229), Expect = 2e-16
Identities = 51/105 (48%), Positives = 68/105 (64%), Gaps = 3/105 (2%)
Frame = -3
Query: 556 GWPKGSTRNDTELLDLETKHQILSMYLWLSFHFKIGRHYRMQRKLHQWQQIDIAELLGKS 377
G PKGS RND+ELLDLETKHQ+LSMYLWLS HF +++ + IA+LLG+S
Sbjct: 689 GMPKGSARNDSELLDLETKHQVLSMYLWLSHHFTEETFPYVKKA--ETMATGIADLLGQS 746
Query: 376 IMNSNWKPETRQATNLK---KGEGYARSLSPVKAFQKKTSEETSQ 251
+ + WKPE+RQA K K +GY R S VK F ++ E++ +
Sbjct: 747 LSKACWKPESRQAGKPKPQQKEDGYERPRSLVKLFDERRHEKSPE 791
Score = 45.8 bits (107), Expect(4) = 5e-12
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = -1
Query: 1497 FLPLVVETNTLLGDLRNVQSGDCVVVIFQEQKYTR*RRRLRGGHCYGVVIYETVQPVVCR 1318
F PLVVE TLLG+L+NV+SGDCVV + + + + + VIY + P R
Sbjct: 431 FKPLVVEAKTLLGELQNVRSGDCVVAFSRREIFEVKLAIEKHTNHRCCVIYGALPPETRR 490
Query: 1317 EQAKL 1303
+QA L
Sbjct: 491 QQASL 495
Score = 43.9 bits (102), Expect(4) = 5e-12
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -1
Query: 990 FVNGLARTLRSEDLCYLIECLDQPFLQVKKVGVSP 886
+ +GL TL +DL YLIECL QPF +KKVG+ P
Sbjct: 558 YPDGLTTTLHLDDLDYLIECLKQPFDDIKKVGLFP 592
Score = 25.0 bits (53), Expect(4) = 5e-12
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 1196 HDFLVASEVVGTSLK*TLKIVVSYTL 1119
+D LVAS+ VG L ++ VV Y+L
Sbjct: 503 YDVLVASDAVGMGLNLNIRRVVFYSL 528
Score = 22.3 bits (46), Expect(4) = 5e-12
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 1132 FLTLSKINSDWELLIKGRFYSYFKRELPVLWTLVKQIARRASCLGNTF 989
F +LSK N D + +PV T VKQIA RA G+ +
Sbjct: 525 FYSLSKYNGD--------------KIVPVPATQVKQIAGRAGRRGSRY 558