BLASTX nr result
ID: Coptis21_contig00013474
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00013474 (708 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [... 267 2e-69 ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative ... 262 4e-68 ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago ... 262 6e-68 ref|XP_002320845.1| predicted protein [Populus trichocarpa] gi|1... 258 8e-67 ref|XP_003549686.1| PREDICTED: exosome complex component RRP41-l... 257 2e-66 >ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [Vitis vinifera] gi|147867252|emb|CAN81194.1| hypothetical protein VITISV_022853 [Vitis vinifera] gi|297745390|emb|CBI40470.3| unnamed protein product [Vitis vinifera] Length = 241 Score = 267 bits (682), Expect = 2e-69 Identities = 143/205 (69%), Positives = 154/205 (75%) Frame = +3 Query: 3 NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 182 NRSQQ+SD+ALVRCEY+MANFSTGDRMRKPKGDRRS EISLVIRQTMEACI+THLMPRSQ Sbjct: 57 NRSQQISDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQ 116 Query: 183 IDIFVQVLQADGGTRSACIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362 IDIFVQVLQADGGTRSACI Sbjct: 117 IDIFVQVLQADGGTRSACI---------------------NAATLALADAGIPMRDLVTS 155 Query: 363 XXXXXLNSTPLLDLNYIEDSAGGPDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAME 542 LNSTPLLDLNY+EDSAGGPDVTVG+L KL+KVTLLQMDAKLPM+ FE VMQLA+E Sbjct: 156 CSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPKLDKVTLLQMDAKLPMDIFENVMQLAIE 215 Query: 543 GCKAVANYIREVLLENTKQLEFRCG 617 GCKA+ANYIREVLLENTKQLE+R G Sbjct: 216 GCKAIANYIREVLLENTKQLEYRRG 240 >ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis] gi|223529966|gb|EEF31893.1| Exosome complex exonuclease RRP41, putative [Ricinus communis] Length = 241 Score = 262 bits (670), Expect = 4e-68 Identities = 139/206 (67%), Positives = 154/206 (74%) Frame = +3 Query: 3 NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 182 NRSQQ+ D+ALVRCEY+MANFSTGDRMRKPKGDRRS EISLVIRQTME CI+THLMPRSQ Sbjct: 57 NRSQQIIDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ 116 Query: 183 IDIFVQVLQADGGTRSACIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362 IDI+VQVLQADGGTRSACI Sbjct: 117 IDIYVQVLQADGGTRSACI---------------------NAATLALADAGIPMRDLVTS 155 Query: 363 XXXXXLNSTPLLDLNYIEDSAGGPDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAME 542 LNSTPLLDLNY+EDSAGGPDVTVG+L KL+KVTLLQMDAKLP++TFE VMQLA+E Sbjct: 156 CSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVE 215 Query: 543 GCKAVANYIREVLLENTKQLEFRCGV 620 GCKA+ANYIRE+LLENTKQLE+R G+ Sbjct: 216 GCKAIANYIREILLENTKQLEYRRGL 241 >ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago truncatula] gi|355501548|gb|AES82751.1| Exosome complex exonuclease RRP41 [Medicago truncatula] Length = 241 Score = 262 bits (669), Expect = 6e-68 Identities = 140/205 (68%), Positives = 151/205 (73%) Frame = +3 Query: 3 NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 182 NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRS EISLVIRQTME CI+THLMPRSQ Sbjct: 57 NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ 116 Query: 183 IDIFVQVLQADGGTRSACIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362 IDI+VQVLQADGGTRSACI Sbjct: 117 IDIYVQVLQADGGTRSACI---------------------NAATLALADAGIPMLDLVTS 155 Query: 363 XXXXXLNSTPLLDLNYIEDSAGGPDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAME 542 LNSTPLLDLNY+EDSAGGPDVTVG+L KL+KVTLLQMD+KLP++ E VMQLA E Sbjct: 156 CSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPKLDKVTLLQMDSKLPIDILENVMQLATE 215 Query: 543 GCKAVANYIREVLLENTKQLEFRCG 617 GCKA+ANYIRE+LLENTKQLE+R G Sbjct: 216 GCKAIANYIREILLENTKQLEYRRG 240 >ref|XP_002320845.1| predicted protein [Populus trichocarpa] gi|118489833|gb|ABK96716.1| unknown [Populus trichocarpa x Populus deltoides] gi|222861618|gb|EEE99160.1| predicted protein [Populus trichocarpa] Length = 241 Score = 258 bits (659), Expect = 8e-67 Identities = 138/206 (66%), Positives = 153/206 (74%) Frame = +3 Query: 3 NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 182 NRSQQ++D+ALVRCEYSMANFSTGDR RKPKGDRRS EISLVIRQ ME CI+T+LMPRSQ Sbjct: 57 NRSQQINDQALVRCEYSMANFSTGDRRRKPKGDRRSTEISLVIRQAMEECILTNLMPRSQ 116 Query: 183 IDIFVQVLQADGGTRSACIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362 IDI+VQVLQADGGTRSACI Sbjct: 117 IDIYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGF---------------- 160 Query: 363 XXXXXLNSTPLLDLNYIEDSAGGPDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAME 542 LNSTPLLDLNY+EDSAGGPDVTVG+L KL+KVTLLQMDAKLP++TFE VMQLA+E Sbjct: 161 -----LNSTPLLDLNYVEDSAGGPDVTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVE 215 Query: 543 GCKAVANYIREVLLENTKQLEFRCGV 620 GCKA+ANYIREVLLENTKQLE+R G+ Sbjct: 216 GCKAIANYIREVLLENTKQLEYRRGL 241 >ref|XP_003549686.1| PREDICTED: exosome complex component RRP41-like [Glycine max] Length = 241 Score = 257 bits (656), Expect = 2e-66 Identities = 137/206 (66%), Positives = 152/206 (73%) Frame = +3 Query: 3 NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 182 NR+QQ+S ALVRCEYSMANFSTGDRMRKPKGDRRS EISLVIRQTMEACI+THL+PRSQ Sbjct: 57 NRNQQISSHALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQ 116 Query: 183 IDIFVQVLQADGGTRSACIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362 IDI+VQVLQADGGTRSACI Sbjct: 117 IDIYVQVLQADGGTRSACI---------------------NAATLALADAGIPMRDLVTS 155 Query: 363 XXXXXLNSTPLLDLNYIEDSAGGPDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAME 542 LNSTPLLDLNY+EDSAGGPDVT+G+L KL+KVTLLQMD+KLP++ E VMQLA+E Sbjct: 156 CSAGYLNSTPLLDLNYVEDSAGGPDVTLGILPKLDKVTLLQMDSKLPIDILENVMQLAIE 215 Query: 543 GCKAVANYIREVLLENTKQLEFRCGV 620 GCKA+ANYIREVLLENTKQLE+R GV Sbjct: 216 GCKAIANYIREVLLENTKQLEYRRGV 241