BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013474
         (708 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [...   267   2e-69
ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative ...   262   4e-68
ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago ...   262   6e-68
ref|XP_002320845.1| predicted protein [Populus trichocarpa] gi|1...   258   8e-67
ref|XP_003549686.1| PREDICTED: exosome complex component RRP41-l...   257   2e-66

>ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [Vitis vinifera]
           gi|147867252|emb|CAN81194.1| hypothetical protein
           VITISV_022853 [Vitis vinifera]
           gi|297745390|emb|CBI40470.3| unnamed protein product
           [Vitis vinifera]
          Length = 241

 Score =  267 bits (682), Expect = 2e-69
 Identities = 143/205 (69%), Positives = 154/205 (75%)
 Frame = +3

Query: 3   NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 182
           NRSQQ+SD+ALVRCEY+MANFSTGDRMRKPKGDRRS EISLVIRQTMEACI+THLMPRSQ
Sbjct: 57  NRSQQISDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQ 116

Query: 183 IDIFVQVLQADGGTRSACIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
           IDIFVQVLQADGGTRSACI                                         
Sbjct: 117 IDIFVQVLQADGGTRSACI---------------------NAATLALADAGIPMRDLVTS 155

Query: 363 XXXXXLNSTPLLDLNYIEDSAGGPDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAME 542
                LNSTPLLDLNY+EDSAGGPDVTVG+L KL+KVTLLQMDAKLPM+ FE VMQLA+E
Sbjct: 156 CSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPKLDKVTLLQMDAKLPMDIFENVMQLAIE 215

Query: 543 GCKAVANYIREVLLENTKQLEFRCG 617
           GCKA+ANYIREVLLENTKQLE+R G
Sbjct: 216 GCKAIANYIREVLLENTKQLEYRRG 240


>ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
           gi|223529966|gb|EEF31893.1| Exosome complex exonuclease
           RRP41, putative [Ricinus communis]
          Length = 241

 Score =  262 bits (670), Expect = 4e-68
 Identities = 139/206 (67%), Positives = 154/206 (74%)
 Frame = +3

Query: 3   NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 182
           NRSQQ+ D+ALVRCEY+MANFSTGDRMRKPKGDRRS EISLVIRQTME CI+THLMPRSQ
Sbjct: 57  NRSQQIIDQALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ 116

Query: 183 IDIFVQVLQADGGTRSACIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
           IDI+VQVLQADGGTRSACI                                         
Sbjct: 117 IDIYVQVLQADGGTRSACI---------------------NAATLALADAGIPMRDLVTS 155

Query: 363 XXXXXLNSTPLLDLNYIEDSAGGPDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAME 542
                LNSTPLLDLNY+EDSAGGPDVTVG+L KL+KVTLLQMDAKLP++TFE VMQLA+E
Sbjct: 156 CSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVE 215

Query: 543 GCKAVANYIREVLLENTKQLEFRCGV 620
           GCKA+ANYIRE+LLENTKQLE+R G+
Sbjct: 216 GCKAIANYIREILLENTKQLEYRRGL 241


>ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
           gi|355501548|gb|AES82751.1| Exosome complex exonuclease
           RRP41 [Medicago truncatula]
          Length = 241

 Score =  262 bits (669), Expect = 6e-68
 Identities = 140/205 (68%), Positives = 151/205 (73%)
 Frame = +3

Query: 3   NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 182
           NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRS EISLVIRQTME CI+THLMPRSQ
Sbjct: 57  NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ 116

Query: 183 IDIFVQVLQADGGTRSACIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
           IDI+VQVLQADGGTRSACI                                         
Sbjct: 117 IDIYVQVLQADGGTRSACI---------------------NAATLALADAGIPMLDLVTS 155

Query: 363 XXXXXLNSTPLLDLNYIEDSAGGPDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAME 542
                LNSTPLLDLNY+EDSAGGPDVTVG+L KL+KVTLLQMD+KLP++  E VMQLA E
Sbjct: 156 CSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPKLDKVTLLQMDSKLPIDILENVMQLATE 215

Query: 543 GCKAVANYIREVLLENTKQLEFRCG 617
           GCKA+ANYIRE+LLENTKQLE+R G
Sbjct: 216 GCKAIANYIREILLENTKQLEYRRG 240


>ref|XP_002320845.1| predicted protein [Populus trichocarpa] gi|118489833|gb|ABK96716.1|
           unknown [Populus trichocarpa x Populus deltoides]
           gi|222861618|gb|EEE99160.1| predicted protein [Populus
           trichocarpa]
          Length = 241

 Score =  258 bits (659), Expect = 8e-67
 Identities = 138/206 (66%), Positives = 153/206 (74%)
 Frame = +3

Query: 3   NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 182
           NRSQQ++D+ALVRCEYSMANFSTGDR RKPKGDRRS EISLVIRQ ME CI+T+LMPRSQ
Sbjct: 57  NRSQQINDQALVRCEYSMANFSTGDRRRKPKGDRRSTEISLVIRQAMEECILTNLMPRSQ 116

Query: 183 IDIFVQVLQADGGTRSACIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
           IDI+VQVLQADGGTRSACI                                         
Sbjct: 117 IDIYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGF---------------- 160

Query: 363 XXXXXLNSTPLLDLNYIEDSAGGPDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAME 542
                LNSTPLLDLNY+EDSAGGPDVTVG+L KL+KVTLLQMDAKLP++TFE VMQLA+E
Sbjct: 161 -----LNSTPLLDLNYVEDSAGGPDVTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVE 215

Query: 543 GCKAVANYIREVLLENTKQLEFRCGV 620
           GCKA+ANYIREVLLENTKQLE+R G+
Sbjct: 216 GCKAIANYIREVLLENTKQLEYRRGL 241


>ref|XP_003549686.1| PREDICTED: exosome complex component RRP41-like [Glycine max]
          Length = 241

 Score =  257 bits (656), Expect = 2e-66
 Identities = 137/206 (66%), Positives = 152/206 (73%)
 Frame = +3

Query: 3   NRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 182
           NR+QQ+S  ALVRCEYSMANFSTGDRMRKPKGDRRS EISLVIRQTMEACI+THL+PRSQ
Sbjct: 57  NRNQQISSHALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQ 116

Query: 183 IDIFVQVLQADGGTRSACIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 362
           IDI+VQVLQADGGTRSACI                                         
Sbjct: 117 IDIYVQVLQADGGTRSACI---------------------NAATLALADAGIPMRDLVTS 155

Query: 363 XXXXXLNSTPLLDLNYIEDSAGGPDVTVGMLSKLEKVTLLQMDAKLPMETFETVMQLAME 542
                LNSTPLLDLNY+EDSAGGPDVT+G+L KL+KVTLLQMD+KLP++  E VMQLA+E
Sbjct: 156 CSAGYLNSTPLLDLNYVEDSAGGPDVTLGILPKLDKVTLLQMDSKLPIDILENVMQLAIE 215

Query: 543 GCKAVANYIREVLLENTKQLEFRCGV 620
           GCKA+ANYIREVLLENTKQLE+R GV
Sbjct: 216 GCKAIANYIREVLLENTKQLEYRRGV 241