BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013465
         (436 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272601.1| PREDICTED: pentatricopeptide repeat-containi...    89   3e-16
ref|XP_002510687.1| pentatricopeptide repeat-containing protein,...    88   8e-16
emb|CAN74746.1| hypothetical protein VITISV_012024 [Vitis vinifera]    87   1e-15
ref|XP_002307797.1| predicted protein [Populus trichocarpa] gi|2...    85   5e-15
ref|XP_003528528.1| PREDICTED: pentatricopeptide repeat-containi...    75   6e-12

>ref|XP_002272601.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01860-like [Vitis vinifera]
          Length = 514

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 56/142 (39%), Positives = 75/142 (52%), Gaps = 2/142 (1%)
 Frame = -3

Query: 434 ELRNSHFSRLTVMAQSKVGHSQRKLPKNLRYPRRAKVPPEPKGSLYLKKKKVIGIDPFRM 255
           E  N +  +L V   ++V H  RK  KNL +PRRAK+PPEP+ S +LK     G +   M
Sbjct: 32  EFSNKNEIKLGVQCNARVNH--RKPTKNLPHPRRAKLPPEPEISTFLKGGNS-GTEQSEM 88

Query: 254 GFEYSEKPELMDKNAESDG--NGNDDDLKWSTDELDAISSLFQGRIPQKPGSLNXXXXXX 81
           G    ++P+  D     DG     + ++ W +DE++AISSLF GRIPQKPG LN      
Sbjct: 89  GTVLDKEPDANDDGFLVDGIEGRKEGEIVWDSDEIEAISSLFMGRIPQKPGKLNRERPLP 148

Query: 80  XXXXXXXXXXXXPTPKKHVRRA 15
                       PT K+HVR A
Sbjct: 149 LPLPYKLRPMGLPTTKRHVRAA 170


>ref|XP_002510687.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223551388|gb|EEF52874.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 469

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 51/122 (41%), Positives = 71/122 (58%)
 Frame = -3

Query: 371 QRKLPKNLRYPRRAKVPPEPKGSLYLKKKKVIGIDPFRMGFEYSEKPELMDKNAESDGNG 192
           ++KLPKNL+ PRR+K+PP+   +L+LKK    G+DPF+M     +  +      E + NG
Sbjct: 11  RKKLPKNLQSPRRSKLPPDFGVNLFLKKPTT-GVDPFQMDSFLVDDGDGDLNQEEKEQNG 69

Query: 191 NDDDLKWSTDELDAISSLFQGRIPQKPGSLNXXXXXXXXXXXXXXXXXXPTPKKHVRRAC 12
              D+ W +DE++AISSLFQGRIPQ+PG+LN                  P+PKKH R   
Sbjct: 70  ---DIVWESDEIEAISSLFQGRIPQRPGNLNRERPLPLPLPHKLRPLGPPSPKKHNRNVV 126

Query: 11  PS 6
            S
Sbjct: 127 VS 128


>emb|CAN74746.1| hypothetical protein VITISV_012024 [Vitis vinifera]
          Length = 514

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 56/149 (37%), Positives = 76/149 (51%), Gaps = 9/149 (6%)
 Frame = -3

Query: 434 ELRNSHFSRLTVMAQSKVGHSQRKLPKNLRYPRRAKVPPEPKGSLYLKKKKVIGIDPFRM 255
           E  N +  +L V   ++V H  RK  KNL +PRRAK+PPEP+ S +LK            
Sbjct: 32  EFSNKNEIKLGVQCNARVNH--RKPTKNLPHPRRAKLPPEPEISTFLKGGN--------S 81

Query: 254 GFEYSEKPELMDKNAESDGNG---------NDDDLKWSTDELDAISSLFQGRIPQKPGSL 102
           G E SE   ++DK  + + +G          + ++ W +DE++AISSLF GRIPQKPG L
Sbjct: 82  GTEQSEMGTVLDKELDPNDDGFLVDGIEGRKEGEIVWDSDEIEAISSLFMGRIPQKPGKL 141

Query: 101 NXXXXXXXXXXXXXXXXXXPTPKKHVRRA 15
           N                  PT K+HVR A
Sbjct: 142 NRERPLPLPLPYKIRPMGLPTTKRHVRAA 170


>ref|XP_002307797.1| predicted protein [Populus trichocarpa] gi|222857246|gb|EEE94793.1|
           predicted protein [Populus trichocarpa]
          Length = 475

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 46/127 (36%), Positives = 68/127 (53%)
 Frame = -3

Query: 398 MAQSKVGHSQRKLPKNLRYPRRAKVPPEPKGSLYLKKKKVIGIDPFRMGFEYSEKPELMD 219
           MA S      RK+PKN+RYPRR+K+PP+   +L+LKK +   +             +L +
Sbjct: 1   MAHSSTRICYRKIPKNIRYPRRSKLPPDFGVNLFLKKPQTDSVQ--------DHSDDLTE 52

Query: 218 KNAESDGNGNDDDLKWSTDELDAISSLFQGRIPQKPGSLNXXXXXXXXXXXXXXXXXXPT 39
           +  E +   N+ ++ W ++E++AISSLF+GRIPQKPG L                   P 
Sbjct: 53  EEEEEEIEVNNGEIVWESEEIEAISSLFRGRIPQKPGKLGRERPLPLPVPYKLRPLGLPA 112

Query: 38  PKKHVRR 18
           PKKHV +
Sbjct: 113 PKKHVNK 119


>ref|XP_003528528.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01860-like [Glycine max]
          Length = 478

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 53/141 (37%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
 Frame = -3

Query: 419 HFSRLTVMAQSKVGHSQRKLPKNLRYPRRAKVPPEPKGSLYLKKKKVIGIDPFRMGFEYS 240
           ++ R+TV+A SK    +R+ PK+ RY  R K PPE   +L+LKK               +
Sbjct: 21  NYRRVTVVAHSK----RRRPPKDNRYRPRPKQPPEFGVNLFLKKPST------------A 64

Query: 239 EKP--ELMDKNAESDGNGNDD-DLKWSTDELDAISSLFQGRIPQKPGSLNXXXXXXXXXX 69
            KP  + MD N E+D   + +  + W +DEL+AISSLFQGRIPQKPG L+          
Sbjct: 65  SKPTDDDMDSNEENDEEEDGNIGVVWESDELEAISSLFQGRIPQKPGKLDRERPLPLPVP 124

Query: 68  XXXXXXXXPTPKKHVRRACPS 6
                   PTPK  V+   P+
Sbjct: 125 FKLRPLRLPTPKTQVKLTAPA 145