BLASTX nr result
ID: Coptis21_contig00013465
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00013465 (436 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002272601.1| PREDICTED: pentatricopeptide repeat-containi... 89 3e-16 ref|XP_002510687.1| pentatricopeptide repeat-containing protein,... 88 8e-16 emb|CAN74746.1| hypothetical protein VITISV_012024 [Vitis vinifera] 87 1e-15 ref|XP_002307797.1| predicted protein [Populus trichocarpa] gi|2... 85 5e-15 ref|XP_003528528.1| PREDICTED: pentatricopeptide repeat-containi... 75 6e-12 >ref|XP_002272601.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01860-like [Vitis vinifera] Length = 514 Score = 89.4 bits (220), Expect = 3e-16 Identities = 56/142 (39%), Positives = 75/142 (52%), Gaps = 2/142 (1%) Frame = -3 Query: 434 ELRNSHFSRLTVMAQSKVGHSQRKLPKNLRYPRRAKVPPEPKGSLYLKKKKVIGIDPFRM 255 E N + +L V ++V H RK KNL +PRRAK+PPEP+ S +LK G + M Sbjct: 32 EFSNKNEIKLGVQCNARVNH--RKPTKNLPHPRRAKLPPEPEISTFLKGGNS-GTEQSEM 88 Query: 254 GFEYSEKPELMDKNAESDG--NGNDDDLKWSTDELDAISSLFQGRIPQKPGSLNXXXXXX 81 G ++P+ D DG + ++ W +DE++AISSLF GRIPQKPG LN Sbjct: 89 GTVLDKEPDANDDGFLVDGIEGRKEGEIVWDSDEIEAISSLFMGRIPQKPGKLNRERPLP 148 Query: 80 XXXXXXXXXXXXPTPKKHVRRA 15 PT K+HVR A Sbjct: 149 LPLPYKLRPMGLPTTKRHVRAA 170 >ref|XP_002510687.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223551388|gb|EEF52874.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 469 Score = 87.8 bits (216), Expect = 8e-16 Identities = 51/122 (41%), Positives = 71/122 (58%) Frame = -3 Query: 371 QRKLPKNLRYPRRAKVPPEPKGSLYLKKKKVIGIDPFRMGFEYSEKPELMDKNAESDGNG 192 ++KLPKNL+ PRR+K+PP+ +L+LKK G+DPF+M + + E + NG Sbjct: 11 RKKLPKNLQSPRRSKLPPDFGVNLFLKKPTT-GVDPFQMDSFLVDDGDGDLNQEEKEQNG 69 Query: 191 NDDDLKWSTDELDAISSLFQGRIPQKPGSLNXXXXXXXXXXXXXXXXXXPTPKKHVRRAC 12 D+ W +DE++AISSLFQGRIPQ+PG+LN P+PKKH R Sbjct: 70 ---DIVWESDEIEAISSLFQGRIPQRPGNLNRERPLPLPLPHKLRPLGPPSPKKHNRNVV 126 Query: 11 PS 6 S Sbjct: 127 VS 128 >emb|CAN74746.1| hypothetical protein VITISV_012024 [Vitis vinifera] Length = 514 Score = 87.4 bits (215), Expect = 1e-15 Identities = 56/149 (37%), Positives = 76/149 (51%), Gaps = 9/149 (6%) Frame = -3 Query: 434 ELRNSHFSRLTVMAQSKVGHSQRKLPKNLRYPRRAKVPPEPKGSLYLKKKKVIGIDPFRM 255 E N + +L V ++V H RK KNL +PRRAK+PPEP+ S +LK Sbjct: 32 EFSNKNEIKLGVQCNARVNH--RKPTKNLPHPRRAKLPPEPEISTFLKGGN--------S 81 Query: 254 GFEYSEKPELMDKNAESDGNG---------NDDDLKWSTDELDAISSLFQGRIPQKPGSL 102 G E SE ++DK + + +G + ++ W +DE++AISSLF GRIPQKPG L Sbjct: 82 GTEQSEMGTVLDKELDPNDDGFLVDGIEGRKEGEIVWDSDEIEAISSLFMGRIPQKPGKL 141 Query: 101 NXXXXXXXXXXXXXXXXXXPTPKKHVRRA 15 N PT K+HVR A Sbjct: 142 NRERPLPLPLPYKIRPMGLPTTKRHVRAA 170 >ref|XP_002307797.1| predicted protein [Populus trichocarpa] gi|222857246|gb|EEE94793.1| predicted protein [Populus trichocarpa] Length = 475 Score = 85.1 bits (209), Expect = 5e-15 Identities = 46/127 (36%), Positives = 68/127 (53%) Frame = -3 Query: 398 MAQSKVGHSQRKLPKNLRYPRRAKVPPEPKGSLYLKKKKVIGIDPFRMGFEYSEKPELMD 219 MA S RK+PKN+RYPRR+K+PP+ +L+LKK + + +L + Sbjct: 1 MAHSSTRICYRKIPKNIRYPRRSKLPPDFGVNLFLKKPQTDSVQ--------DHSDDLTE 52 Query: 218 KNAESDGNGNDDDLKWSTDELDAISSLFQGRIPQKPGSLNXXXXXXXXXXXXXXXXXXPT 39 + E + N+ ++ W ++E++AISSLF+GRIPQKPG L P Sbjct: 53 EEEEEEIEVNNGEIVWESEEIEAISSLFRGRIPQKPGKLGRERPLPLPVPYKLRPLGLPA 112 Query: 38 PKKHVRR 18 PKKHV + Sbjct: 113 PKKHVNK 119 >ref|XP_003528528.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01860-like [Glycine max] Length = 478 Score = 75.1 bits (183), Expect = 6e-12 Identities = 53/141 (37%), Positives = 73/141 (51%), Gaps = 3/141 (2%) Frame = -3 Query: 419 HFSRLTVMAQSKVGHSQRKLPKNLRYPRRAKVPPEPKGSLYLKKKKVIGIDPFRMGFEYS 240 ++ R+TV+A SK +R+ PK+ RY R K PPE +L+LKK + Sbjct: 21 NYRRVTVVAHSK----RRRPPKDNRYRPRPKQPPEFGVNLFLKKPST------------A 64 Query: 239 EKP--ELMDKNAESDGNGNDD-DLKWSTDELDAISSLFQGRIPQKPGSLNXXXXXXXXXX 69 KP + MD N E+D + + + W +DEL+AISSLFQGRIPQKPG L+ Sbjct: 65 SKPTDDDMDSNEENDEEEDGNIGVVWESDELEAISSLFQGRIPQKPGKLDRERPLPLPVP 124 Query: 68 XXXXXXXXPTPKKHVRRACPS 6 PTPK V+ P+ Sbjct: 125 FKLRPLRLPTPKTQVKLTAPA 145