BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013452
         (1686 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002534512.1| conserved hypothetical protein [Ricinus comm...    99   4e-18
ref|XP_002320506.1| f-box family protein [Populus trichocarpa] g...    93   2e-16
ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vi...    92   3e-16
ref|NP_566322.1| F-box protein [Arabidopsis thaliana] gi|7526578...    90   2e-15
ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g...    89   3e-15

>ref|XP_002534512.1| conserved hypothetical protein [Ricinus communis]
            gi|223525141|gb|EEF27869.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 383

 Score = 98.6 bits (244), Expect = 4e-18
 Identities = 65/210 (30%), Positives = 104/210 (49%), Gaps = 20/210 (9%)
 Frame = -2

Query: 1685 GFGFDPVSKVFKVVRI--VINLRNASREE------TAAEVYNLGTDEWRSLGKVPFYFPR 1530
            GFGFDPV K +KV+++  +    N + E       +  ++  +G+  WRSLG+ P+Y   
Sbjct: 152  GFGFDPVRKKYKVLKVSYIRRTNNTAGERYGLSLRSEVQILTVGSPSWRSLGETPYY--- 208

Query: 1529 YTNDNYWSPIRNNTGSDILVNGALHWIGSSSNSMTSEEVILFKLDIEEFQKLPLPPGLGS 1350
                    PI  ++ S + VNG LHW+          ++I F L+ E+F+++PLP   G 
Sbjct: 209  --------PI--HSPSQVYVNGRLHWVNWPVRYRPGRKLISFDLEDEKFREVPLPGSDGI 258

Query: 1349 AVNTNRFLVELGECLCVVHVINAEYIRIWVMKDYGFESSWTKEYVIRITQRVVIPGSRDY 1170
                +  LV + +CL      N     +WVMKDYG + SW KE+ I     V +P   + 
Sbjct: 259  KWG-DYMLVVIRDCLSAAVYRNYGSFEVWVMKDYGLKESWIKEFSI----GVYLPKGLEQ 313

Query: 1169 RLDP------------LQPIQLMKNGEMLL 1116
            ++DP             + + ++KNGE+LL
Sbjct: 314  KIDPSFRVSKFYRRAFTRILCVLKNGEILL 343


>ref|XP_002320506.1| f-box family protein [Populus trichocarpa]
            gi|222861279|gb|EEE98821.1| f-box family protein [Populus
            trichocarpa]
          Length = 422

 Score = 93.2 bits (230), Expect = 2e-16
 Identities = 70/229 (30%), Positives = 101/229 (44%), Gaps = 18/229 (7%)
 Frame = -2

Query: 1685 GFGFDPVSKVFKVVRIVI---------NLRNASREETAAEVYNLGTDEWRSLGKVPFYFP 1533
            GFGF+P +K +KV+RIV            R      +  ++  LG  EWRSLGKV +   
Sbjct: 170  GFGFNPKTKEYKVIRIVYYRNGHGGYPRSRRIIYPLSEVQILTLGCPEWRSLGKVSYRLV 229

Query: 1532 RYTNDNYWSPIRNNTGSDILVNGALHWIGSSSNSMTSEEVILFKLDIEEFQKLPLPPGLG 1353
            R               S  LVNG LHWI     +  +  ++ F L  E+F+++   P  G
Sbjct: 230  R-------------RASGALVNGRLHWISRPCRNKPARRLVSFDLTDEQFREVS-KPDCG 275

Query: 1352 SAVNTNRFLVELGECLCVVHVINAEYIRIWVMKDYGFESSWTKEYVIRITQRVVIPGSRD 1173
                 N  LV L  CL      N   + IWVMK+Y  + SW KEY I       +  ++D
Sbjct: 276  GLNRCNYHLVVLRGCLSAAVYCNYGRLEIWVMKEYNVKESWVKEYNIGAYMPKGLKQNQD 335

Query: 1172 YRLD---------PLQPIQLMKNGEMLLLCSDSLNGYLAYYNTKTKTFR 1053
             +L           +  + ++KNGE+LL   +  N  L  Y+ K   F+
Sbjct: 336  RQLKIWKNSSNGRVVGALCVLKNGEILL---EYKNRVLVSYDPKNGKFK 381


>ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera]
            gi|147785390|emb|CAN68678.1| hypothetical protein
            VITISV_041941 [Vitis vinifera]
          Length = 409

 Score = 92.4 bits (228), Expect = 3e-16
 Identities = 69/210 (32%), Positives = 106/210 (50%), Gaps = 20/210 (9%)
 Frame = -2

Query: 1685 GFGFDPVSKVFKVVRIVI---------NLRNASREETAAEVYNLGTDEWRSLGKVPFYFP 1533
            GFG+ P+++V+KVV++V            R  +  ++  +V  LG+  WRSLGKV +   
Sbjct: 170  GFGYHPMTEVYKVVKVVYYRNGYGGFSRFRRITCSQSEVQVLTLGSPTWRSLGKVSYQLD 229

Query: 1532 RYTNDNYWSPIRNNTGSDILVNGALHWIGSSSNSMTSEEVILFKLDIEEFQKLPLPPGLG 1353
            R+              S+ LVNG LHW+      +T   ++ F L  E+F+++P  P  G
Sbjct: 230  RWP-------------SEALVNGRLHWVTRPRRYVT-RFIVSFDLADEQFREIP-KPDCG 274

Query: 1352 SAVNTNRFLVELGECL-CVVHVINAEYIRIWVMKDYGFESSWTKEYVI------RITQRV 1194
                 N  L+ LG CL   VH  N + + +WVMK+Y  + SW KE+ I       + Q V
Sbjct: 275  GLSRCNYHLLVLGGCLSAAVHRSNGK-LEVWVMKEYDVKESWIKEFNIGAHLPKGLKQDV 333

Query: 1193 VIPGSRDYRLDP----LQPIQLMKNGEMLL 1116
              P  R +R  P    ++ + L+KNGE+LL
Sbjct: 334  NRP-HRIWRNAPKGRGVRLLCLLKNGEILL 362


>ref|NP_566322.1| F-box protein [Arabidopsis thaliana]
            gi|75265789|sp|Q9SFC7.1|FB135_ARATH RecName: Full=F-box
            protein At3g07870 gi|6648199|gb|AAF21197.1|AC013483_21
            unknown protein [Arabidopsis thaliana]
            gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21
            [Arabidopsis thaliana] gi|109134141|gb|ABG25068.1|
            At3g07870 [Arabidopsis thaliana]
            gi|332641092|gb|AEE74613.1| F-box protein [Arabidopsis
            thaliana]
          Length = 417

 Score = 89.7 bits (221), Expect = 2e-15
 Identities = 66/206 (32%), Positives = 98/206 (47%), Gaps = 19/206 (9%)
 Frame = -2

Query: 1685 GFGFDPVSKVFKVVRIVINLRNASR-------------EETAAEVYNLG---TDE---WR 1563
            GFGF  ++K +KV++IV    ++S              +++  ++  L    TD+   WR
Sbjct: 166  GFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWR 225

Query: 1562 SLGKVPFYFPRYTNDNYWSPIRNNTGSDILVNGALHWIGSSSNSMTSEEVILFKLDIEEF 1383
            SLGK P+ F + +             S+ LVNG LH++      +   + + F L+ EEF
Sbjct: 226  SLGKAPYKFVKRS-------------SEALVNGRLHFVTRPRRHVPDRKFVSFDLEDEEF 272

Query: 1382 QKLPLPPGLGSAVNTNRFLVELGECLCVVHVINAEYIRIWVMKDYGFESSWTKEYVIRIT 1203
            +++P  P  G    TN  LV L  CLC V   N   + IWVMK YG + SW KEY I   
Sbjct: 273  KEIP-KPDCGGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKTYGVKESWGKEYSI--- 328

Query: 1202 QRVVIPGSRDYRLDPLQPIQLMKNGE 1125
                +P      LD  +P+ + KN E
Sbjct: 329  -GTYLPKGLKQNLD--RPMWIWKNAE 351


>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
            gi|222843314|gb|EEE80861.1| f-box family protein [Populus
            trichocarpa]
          Length = 408

 Score = 89.4 bits (220), Expect = 3e-15
 Identities = 68/229 (29%), Positives = 101/229 (44%), Gaps = 18/229 (7%)
 Frame = -2

Query: 1685 GFGFDPVSKVFKVVRIVINLRNASREETA---------AEVYNLGTDEWRSLGKVPFYFP 1533
            GFGF+P +  +KV+RIV       R   +          ++  LG   WRSLGKV +   
Sbjct: 169  GFGFNPKTNEYKVIRIVYYRNGHGRYPRSRRIIYPLSQVQILTLGCPGWRSLGKVSYRLV 228

Query: 1532 RYTNDNYWSPIRNNTGSDILVNGALHWIGSSSNSMTSEEVILFKLDIEEFQKLPLPPGLG 1353
            R               S+ LVNG LHW+     +  +  ++ F L  E+F+++P  P  G
Sbjct: 229  R-------------RASETLVNGRLHWVSRPCRNKPARRLVSFDLTDEQFREVP-KPDCG 274

Query: 1352 SAVNTNRFLVELGECLCVVHVINAEYIRIWVMKDYGFESSWTKEYVI------RITQRVV 1191
                 +  L  L  CL V    N   + IWVMK+Y  + SW KEY I       + Q +V
Sbjct: 275  GLNRCDYHLAVLRGCLSVAVYCNYGRLEIWVMKEYNVKESWVKEYNIGAYMPKGLKQNLV 334

Query: 1190 IP---GSRDYRLDPLQPIQLMKNGEMLLLCSDSLNGYLAYYNTKTKTFR 1053
             P            ++ + ++KNGE+LL   +  N  L  Y+ K   F+
Sbjct: 335  RPLKIWKNASNGRAVRALCVLKNGEILL---EYKNRALVSYDPKKGKFK 380