BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013440
         (1004 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266337.2| PREDICTED: uncharacterized tRNA/rRNA methylt...   389   e-106
emb|CBI40848.3| unnamed protein product [Vitis vinifera]              389   e-106
ref|XP_004155215.1| PREDICTED: uncharacterized tRNA/rRNA methylt...   370   e-100
ref|XP_003628884.1| RNA methyltransferase-like protein [Medicago...   360   4e-97
ref|XP_002532383.1| RNA binding protein, putative [Ricinus commu...   356   6e-96

>ref|XP_002266337.2| PREDICTED: uncharacterized tRNA/rRNA methyltransferase YsgA-like
            [Vitis vinifera]
          Length = 459

 Score =  389 bits (1000), Expect = e-106
 Identities = 193/283 (68%), Positives = 232/283 (81%), Gaps = 1/283 (0%)
 Frame = +3

Query: 159  PIIIIP-SSNVEKITSPSNPFVKQCVKLRQSSSYRHSQASVLVVGTTPIREVTRFQDLTE 335
            P++ +P  S+V+ ITSPSNPFVK C KLR SSSYR+S  S LVVGTTPIRE+ +FQ  T+
Sbjct: 162  PVVTLPLPSHVKSITSPSNPFVKHCFKLRHSSSYRYSHGSALVVGTTPIREIYKFQQSTQ 221

Query: 336  EGPSVIQCLLLLDGVEVPKGLDDSTLRIVRVSSMVMKKLCGVQSIDSIDAVALMRIPNSF 515
            E    + CLL+LD  E+P+GLDD ++R+VRVSSMVMKKL G+QS +S++A+ALMRIP SF
Sbjct: 222  ERTVEMDCLLILDKAEIPEGLDDFSVRLVRVSSMVMKKLSGLQSTESVEAIALMRIPTSF 281

Query: 516  CYMDDDHGEENCRCWFPTPHRVLVLDGIQDPGNLGTLLRSAVAFRWSGAFLLPGCCDPFN 695
              ++DD  E++CR WF +PHR+LVLD IQDPGNLGTLLRSA+AFRW G FLL GCCDPFN
Sbjct: 282  FSVNDDTYEKDCRRWFQSPHRILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFN 341

Query: 696  EKALRASRGASFQLPIVSGTWAQLENLRNEFQMKMLAGHPESNDGMKGCSLLSQQLADSL 875
             KALRASRGASFQLPIVSG+W  LE L+NEFQMKM+AGHP+SN   K  S LSQ LADSL
Sbjct: 342  GKALRASRGASFQLPIVSGSWIHLETLKNEFQMKMIAGHPDSNQKRKPVSPLSQGLADSL 401

Query: 876  VEKHVCLVLGSEGQGLSEQSERACELISIPMSGDFESLNVSVA 1004
             +  +CLVLGSEG GLSE+S + CEL+SIPM+G+FESLNVSVA
Sbjct: 402  ADVPLCLVLGSEGSGLSEKSWQLCELVSIPMAGEFESLNVSVA 444


>emb|CBI40848.3| unnamed protein product [Vitis vinifera]
          Length = 1306

 Score =  389 bits (1000), Expect = e-106
 Identities = 193/283 (68%), Positives = 232/283 (81%), Gaps = 1/283 (0%)
 Frame = +3

Query: 159  PIIIIP-SSNVEKITSPSNPFVKQCVKLRQSSSYRHSQASVLVVGTTPIREVTRFQDLTE 335
            P++ +P  S+V+ ITSPSNPFVK C KLR SSSYR+S  S LVVGTTPIRE+ +FQ  T+
Sbjct: 1000 PVVTLPLPSHVKSITSPSNPFVKHCFKLRHSSSYRYSHGSALVVGTTPIREIYKFQQSTQ 1059

Query: 336  EGPSVIQCLLLLDGVEVPKGLDDSTLRIVRVSSMVMKKLCGVQSIDSIDAVALMRIPNSF 515
            E    + CLL+LD  E+P+GLDD ++R+VRVSSMVMKKL G+QS +S++A+ALMRIP SF
Sbjct: 1060 ERTVEMDCLLILDKAEIPEGLDDFSVRLVRVSSMVMKKLSGLQSTESVEAIALMRIPTSF 1119

Query: 516  CYMDDDHGEENCRCWFPTPHRVLVLDGIQDPGNLGTLLRSAVAFRWSGAFLLPGCCDPFN 695
              ++DD  E++CR WF +PHR+LVLD IQDPGNLGTLLRSA+AFRW G FLL GCCDPFN
Sbjct: 1120 FSVNDDTYEKDCRRWFQSPHRILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFN 1179

Query: 696  EKALRASRGASFQLPIVSGTWAQLENLRNEFQMKMLAGHPESNDGMKGCSLLSQQLADSL 875
             KALRASRGASFQLPIVSG+W  LE L+NEFQMKM+AGHP+SN   K  S LSQ LADSL
Sbjct: 1180 GKALRASRGASFQLPIVSGSWIHLETLKNEFQMKMIAGHPDSNQKRKPVSPLSQGLADSL 1239

Query: 876  VEKHVCLVLGSEGQGLSEQSERACELISIPMSGDFESLNVSVA 1004
             +  +CLVLGSEG GLSE+S + CEL+SIPM+G+FESLNVSVA
Sbjct: 1240 ADVPLCLVLGSEGSGLSEKSWQLCELVSIPMAGEFESLNVSVA 1282


>ref|XP_004155215.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase slr1673-like
            [Cucumis sativus]
          Length = 328

 Score =  370 bits (951), Expect = e-100
 Identities = 188/275 (68%), Positives = 225/275 (81%)
 Frame = +3

Query: 180  SNVEKITSPSNPFVKQCVKLRQSSSYRHSQASVLVVGTTPIREVTRFQDLTEEGPSVIQC 359
            S+V+ ITS SNPFVK CVKLR SSSYRH   SV+VVG TPIRE+ +FQ+        ++C
Sbjct: 42   SHVKAITSISNPFVKHCVKLRFSSSYRHFHGSVVVVGATPIREICKFQESLHGVTCTLEC 101

Query: 360  LLLLDGVEVPKGLDDSTLRIVRVSSMVMKKLCGVQSIDSIDAVALMRIPNSFCYMDDDHG 539
            LLLLD VEVP+GL + T+RIVRVSS VMKKL G+QS +SIDA+ALMRIP SFC +D +  
Sbjct: 102  LLLLDEVEVPEGLVNLTVRIVRVSSAVMKKLSGLQSTESIDAIALMRIPPSFCSVDGNEK 161

Query: 540  EENCRCWFPTPHRVLVLDGIQDPGNLGTLLRSAVAFRWSGAFLLPGCCDPFNEKALRASR 719
            E + + WFP+PHR+LVL+GIQDPGNLGTL+RSA+AF+W+G FLLPGCCDPFNEKALRASR
Sbjct: 162  EVDFKRWFPSPHRILVLEGIQDPGNLGTLIRSALAFKWNGIFLLPGCCDPFNEKALRASR 221

Query: 720  GASFQLPIVSGTWAQLENLRNEFQMKMLAGHPESNDGMKGCSLLSQQLADSLVEKHVCLV 899
            GASFQLPIVSGTW  LE  + EF+MKMLAGHPESN+  K  S+LSQQ ++SL +  +CLV
Sbjct: 222  GASFQLPIVSGTWNHLEVFKKEFEMKMLAGHPESNE-PKPVSVLSQQFSNSLKDFPLCLV 280

Query: 900  LGSEGQGLSEQSERACELISIPMSGDFESLNVSVA 1004
            LG EG GLSE+S + CEL+SIPM+G FESLNVSVA
Sbjct: 281  LGCEGSGLSEKSWQVCELLSIPMAGGFESLNVSVA 315


>ref|XP_003628884.1| RNA methyltransferase-like protein [Medicago truncatula]
            gi|355522906|gb|AET03360.1| RNA methyltransferase-like
            protein [Medicago truncatula]
          Length = 638

 Score =  360 bits (923), Expect = 4e-97
 Identities = 179/270 (66%), Positives = 216/270 (80%)
 Frame = +3

Query: 195  ITSPSNPFVKQCVKLRQSSSYRHSQASVLVVGTTPIREVTRFQDLTEEGPSVIQCLLLLD 374
            ITS SNPFVK C+KLR +SSYR S  SVLVVGTTPIRE+ RFQ+ ++     + CL+L D
Sbjct: 50   ITSSSNPFVKHCLKLRNNSSYRRSHGSVLVVGTTPIREIYRFQESSQNKNVTMDCLILPD 109

Query: 375  GVEVPKGLDDSTLRIVRVSSMVMKKLCGVQSIDSIDAVALMRIPNSFCYMDDDHGEENCR 554
              E+P GLD+S   IV VSS VM+K+ G+QS DSIDA+ALM+IP SF  +DDD  ++NC+
Sbjct: 110  KAEIPNGLDESADSIVHVSSTVMRKISGLQSTDSIDAIALMKIPASFSNLDDD--QKNCQ 167

Query: 555  CWFPTPHRVLVLDGIQDPGNLGTLLRSAVAFRWSGAFLLPGCCDPFNEKALRASRGASFQ 734
             WFP+ HR+LVLDGIQDPGNLGTLLRSAVAFRW G FLLPGCCDPFNEKALRASRGASFQ
Sbjct: 168  KWFPSAHRILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPGCCDPFNEKALRASRGASFQ 227

Query: 735  LPIVSGTWAQLENLRNEFQMKMLAGHPESNDGMKGCSLLSQQLADSLVEKHVCLVLGSEG 914
            LPIVSG+W  LE+L+ E QMK+LAGHP+    +K    LSQ   DS+++  +CLVLGSEG
Sbjct: 228  LPIVSGSWNHLESLKEESQMKLLAGHPQHEGLIKPVFSLSQSFCDSILDTPLCLVLGSEG 287

Query: 915  QGLSEQSERACELISIPMSGDFESLNVSVA 1004
             GLSE+S +ACEL+SI M+G++ESLNVSVA
Sbjct: 288  SGLSEKSLQACELVSIAMTGEYESLNVSVA 317


>ref|XP_002532383.1| RNA binding protein, putative [Ricinus communis]
            gi|223527907|gb|EEF29995.1| RNA binding protein, putative
            [Ricinus communis]
          Length = 342

 Score =  356 bits (913), Expect = 6e-96
 Identities = 182/319 (57%), Positives = 239/319 (74%), Gaps = 6/319 (1%)
 Frame = +3

Query: 66   MPTFSSVSTTNLSSFLHKRFSNLPTQTKREDPI-----IIIP-SSNVEKITSPSNPFVKQ 227
            +PT S  S  NL++   +  +  P QT+R   I     +  P  ++++ ITS SNPF+K 
Sbjct: 9    VPTVSP-SPLNLTNSKPRLSNTSPNQTQRNGDIDNSAEVRFPLPTHIKSITSTSNPFIKH 67

Query: 228  CVKLRQSSSYRHSQASVLVVGTTPIREVTRFQDLTEEGPSVIQCLLLLDGVEVPKGLDDS 407
            CVKLRQSS YRH+  S LVVGTTPIRE+ +FQ   +E    ++CL+L D  +VP+GLD S
Sbjct: 68   CVKLRQSSPYRHAHGSALVVGTTPIREICKFQKSLKEETVEMECLILPDKAKVPEGLDSS 127

Query: 408  TLRIVRVSSMVMKKLCGVQSIDSIDAVALMRIPNSFCYMDDDHGEENCRCWFPTPHRVLV 587
            + R +RVS++VMK+L  +QS +SI+A+ALM+ P S+  + D   + + R WFP+PHR+LV
Sbjct: 128  STRTLRVSALVMKRLSQLQSTESIEAIALMKFPTSYFVVGDHQKDADFRKWFPSPHRILV 187

Query: 588  LDGIQDPGNLGTLLRSAVAFRWSGAFLLPGCCDPFNEKALRASRGASFQLPIVSGTWAQL 767
            L+GIQDPGNLGTL+RSAVAFRW G FLLPGCCDPFN+KAL+ASRGASFQ+PIVSG+W  L
Sbjct: 188  LEGIQDPGNLGTLVRSAVAFRWGGIFLLPGCCDPFNDKALKASRGASFQVPIVSGSWHHL 247

Query: 768  ENLRNEFQMKMLAGHPESNDGMKGCSLLSQQLADSLVEKHVCLVLGSEGQGLSEQSERAC 947
            E L++EFQMKMLAGHP S+D     S LSQ  ADSL +  +CLVLG+EGQGLSE+S + C
Sbjct: 248  EALKDEFQMKMLAGHPASDDEQTPVSELSQGFADSLADIPICLVLGNEGQGLSEKSLQEC 307

Query: 948  ELISIPMSGDFESLNVSVA 1004
            +L+SIPM+ ++ESLNV+VA
Sbjct: 308  QLVSIPMARNYESLNVAVA 326