BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013420
         (383 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528032.1| pentatricopeptide repeat-containing protein,...   142   3e-32
ref|XP_003610936.1| Pentatricopeptide repeat-containing protein ...   141   5e-32
emb|CBI31329.3| unnamed protein product [Vitis vinifera]              140   8e-32
ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containi...   140   8e-32
emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]   140   8e-32

>ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532562|gb|EEF34350.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 730

 Score =  142 bits (358), Expect = 3e-32
 Identities = 71/127 (55%), Positives = 90/127 (70%)
 Frame = +1

Query: 1   RRMNVLHGKEIHCYIMKKIEXXXXXXXXXXXXXXYSKSGKMLEAQRVFDSMSVKDKVTYT 180
           R  N+ HGKE HCYI+++                Y++SGK+LEA+R+FDS+S +D+VTYT
Sbjct: 443 RVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYT 502

Query: 181 SLVAGYGMQGRGHWALKLFDEMKMSGIEADHITMVAVLSACSHSGLVDEGQMMFAKMINV 360
           SL+AGYG+QG G  ALKLFDEMK   I+ DH+TMVAVLSACSHSGLV EG  +F  M + 
Sbjct: 503 SLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSA 562

Query: 361 YRINPRI 381
           Y I PR+
Sbjct: 563 YGIIPRL 569



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 25/83 (30%), Positives = 50/83 (60%)
 Frame = +1

Query: 103 YSKSGKMLEAQRVFDSMSVKDKVTYTSLVAGYGMQGRGHWALKLFDEMKMSGIEADHITM 282
           Y+K+G++  A+ +F++M  +D V++ ++++GY  +G    A +LF +M++ GIE + IT 
Sbjct: 239 YAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELNIITW 298

Query: 283 VAVLSACSHSGLVDEGQMMFAKM 351
             +   C  SG  +E   + + M
Sbjct: 299 NTIAGGCVQSGNFEEALELLSHM 321


>ref|XP_003610936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355512271|gb|AES93894.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 812

 Score =  141 bits (356), Expect = 5e-32
 Identities = 71/128 (55%), Positives = 92/128 (71%), Gaps = 1/128 (0%)
 Frame = +1

Query: 1   RRMNVLHGKEIHCYIMKKIEXXXXXXXXXXXXXX-YSKSGKMLEAQRVFDSMSVKDKVTY 177
           R  N+ HGKE HCY++K+ E               YS+SGK+LEA++VFDS+S KD+VTY
Sbjct: 441 RIANLQHGKEFHCYMVKREEQFKGYLLLWNSLVEMYSRSGKVLEARKVFDSLSRKDEVTY 500

Query: 178 TSLVAGYGMQGRGHWALKLFDEMKMSGIEADHITMVAVLSACSHSGLVDEGQMMFAKMIN 357
           TS++ GYG+ G G  ALKLF EM+   I+ DH+TMVAVL ACSHSGLV +GQ++F KMI 
Sbjct: 501 TSMIMGYGVSGDGETALKLFAEMRRLNIKPDHVTMVAVLIACSHSGLVAQGQVLFRKMIE 560

Query: 358 VYRINPRI 381
           VY I+PR+
Sbjct: 561 VYGIDPRV 568


>emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  140 bits (354), Expect = 8e-32
 Identities = 66/127 (51%), Positives = 90/127 (70%)
 Frame = +1

Query: 1   RRMNVLHGKEIHCYIMKKIEXXXXXXXXXXXXXXYSKSGKMLEAQRVFDSMSVKDKVTYT 180
           R  N+ HGKE HCY+ ++ +              Y++SGK+LEA+RVFD +  +DK+TYT
Sbjct: 405 RVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYT 464

Query: 181 SLVAGYGMQGRGHWALKLFDEMKMSGIEADHITMVAVLSACSHSGLVDEGQMMFAKMINV 360
           S++AGYGMQG G  ALKLF+EM    I+ DHITM+AVLSACSHSGLV +GQ++F KM ++
Sbjct: 465 SMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSL 524

Query: 361 YRINPRI 381
           Y + P +
Sbjct: 525 YGLTPHL 531


>ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  140 bits (354), Expect = 8e-32
 Identities = 66/127 (51%), Positives = 90/127 (70%)
 Frame = +1

Query: 1   RRMNVLHGKEIHCYIMKKIEXXXXXXXXXXXXXXYSKSGKMLEAQRVFDSMSVKDKVTYT 180
           R  N+ HGKE HCY+ ++ +              Y++SGK+LEA+RVFD +  +DK+TYT
Sbjct: 450 RVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYT 509

Query: 181 SLVAGYGMQGRGHWALKLFDEMKMSGIEADHITMVAVLSACSHSGLVDEGQMMFAKMINV 360
           S++AGYGMQG G  ALKLF+EM    I+ DHITM+AVLSACSHSGLV +GQ++F KM ++
Sbjct: 510 SMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSL 569

Query: 361 YRINPRI 381
           Y + P +
Sbjct: 570 YGLTPHL 576


>emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  140 bits (354), Expect = 8e-32
 Identities = 66/127 (51%), Positives = 90/127 (70%)
 Frame = +1

Query: 1   RRMNVLHGKEIHCYIMKKIEXXXXXXXXXXXXXXYSKSGKMLEAQRVFDSMSVKDKVTYT 180
           R  N+ HGKE HCY+ ++ +              Y++SGK+LEA+RVFD +  +DK+TYT
Sbjct: 524 RVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYT 583

Query: 181 SLVAGYGMQGRGHWALKLFDEMKMSGIEADHITMVAVLSACSHSGLVDEGQMMFAKMINV 360
           S++AGYGMQG G  ALKLF+EM    I+ DHITM+AVLSACSHSGLV +GQ++F KM ++
Sbjct: 584 SMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSL 643

Query: 361 YRINPRI 381
           Y + P +
Sbjct: 644 YGLTPHL 650