BLASTX nr result
ID: Coptis21_contig00013343
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00013343
(1937 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003519928.1| PREDICTED: putative F-box/LRR-repeat protein... 101 6e-19
ref|NP_001189735.1| F-box protein [Arabidopsis thaliana] gi|1222... 90 7e-19
ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794... 101 8e-19
ref|NP_181801.1| F-box protein [Arabidopsis thaliana] gi|4512680... 90 5e-18
ref|XP_003588839.1| F-box/FBD/LRR-repeat protein [Medicago trunc... 98 7e-18
>ref|XP_003519928.1| PREDICTED: putative F-box/LRR-repeat protein At5g25860-like [Glycine
max]
Length = 513
Score = 101 bits (252), Expect = 6e-19
Identities = 101/338 (29%), Positives = 157/338 (46%), Gaps = 21/338 (6%)
Frame = -3
Query: 1587 KSIRMEMDRISYLPGPIQSHVLSFLPMEDAFRTSILSKQWR*VCFSLSNLTFDQHSFMQK 1408
K R E DRIS LP I H++SFL +DA +T ILSK+W+ +C L++LTF S +
Sbjct: 158 KRRRDERDRISELPDCILMHIMSFLDTKDAVQTCILSKRWKDLCKCLTDLTF--RSPFRC 215
Query: 1407 KNSGDFADFVNQML-SHCDGLAIINFEVNNNDYMYPVSVPDLNAWEMCAVDHNVQKLCIH 1231
K F FV+ +L S D +++N ++NN+ + +L+ + HNVQKL ++
Sbjct: 216 KCKKYFRKFVSWVLSSRNDSCSLLNVDINNS----CIETEELDRVIKYVMFHNVQKLTMY 271
Query: 1230 -GVSTKDAAELSGDLFTCISLTSLTL-----ENFVLDLPRTVGFPLLKTLKFDHVMIPS- 1072
G+S++ + +F SLTSL L + + LP+++ P L +L V +
Sbjct: 272 IGLSSRPNLDSLPLVFCSKSLTSLKLCLMHDPSSRIVLPKSLHLPALTSLHLQCVNFTAI 331
Query: 1071 ENLINKLFSNCHVLENLAIRRCNFVTFNYREPLNIFVPNLKRLSLLFMHSYKKTD----- 907
+N + FSNCH+L L + C + + L I L L + S+ T
Sbjct: 332 DNDCAEPFSNCHLLNTLFLWNCEM--HDNAKVLRISNSTLSHLKITSYISFLTTQAFQIA 389
Query: 906 ISAPNLKQFACLGLPPDVSLETLLSLCTASF-------TWSVTRSD-QRASYIHSAHKIV 751
+S PNL F +G P L S C +F W V+ S R + + KI+
Sbjct: 390 LSTPNLSSFTIIGFAP----HQLSSSCNLAFLGSVYIGVWFVSSSTFIRCLQVLANVKIL 445
Query: 750 AGHHNVTELSLYDFYIEALTSRDPVCLPTYSTLKHLHL 637
++ LYD T P C + L+ LH+
Sbjct: 446 KLSWETLQMILYDLSNSNSTMPQPPC---FVRLESLHV 480
>ref|NP_001189735.1| F-box protein [Arabidopsis thaliana]
gi|122223784|sp|Q0WR05.1|FBL39_ARATH RecName:
Full=F-box/LRR-repeat protein At2g42730
gi|110736977|dbj|BAF00444.1| hypothetical protein
[Arabidopsis thaliana] gi|330255068|gb|AEC10162.1| F-box
protein [Arabidopsis thaliana]
Length = 457
Score = 90.1 bits (222), Expect(2) = 7e-19
Identities = 92/356 (25%), Positives = 155/356 (43%), Gaps = 21/356 (5%)
Frame = -3
Query: 1566 DRISYLPGPIQSHVLSFLPMEDAFRTSILSKQWR*VCFSLSNLTFDQHSFMQKKNSG--- 1396
D IS LP + +LS + ++A TS+LSK+W+ + +SNL D + K
Sbjct: 5 DVISRLPDEVLGRILSLISTKEAVSTSVLSKRWKNMFVLVSNLDIDDRQSVPKTKQNRIE 64
Query: 1395 ---DFADFVNQMLSHCDGLAIINFEVNNN-DYMYPVSVPDLNAWEMCAVDHNVQKLCIHG 1228
++ FV+++L G +I + ++ + +W +DH V L +
Sbjct: 65 IHRNYMAFVDKLLDTQRGSSIKKLTLKSHVGVRGGTDSSRIQSWICNVLDHGVMDLDVFI 124
Query: 1227 VSTKDAAELSGDLFTCISLTSLTL-ENFVLDLPRTVGFPLLKTLKFDHV-MIPSENLINK 1054
+ + +F +L L + F + L + V PLL+TL D V + N++
Sbjct: 125 TLKGKSPPVPAMIFKSKTLVKLRVGRGFTIKLSQDVSLPLLRTLCLDSVNFVGGHNVVGT 184
Query: 1053 LFSNCHVLENLAI--RRCNFVTFNYREPLNIFVPNLKRLSLLFMHSYKKTDISAPNLKQF 880
L S C VLE L + RRC T ++ P+LKRL + F + + APNL +
Sbjct: 185 LISRCPVLEELVVEERRCVDWT------CSVSSPSLKRLHIRFDRKFTSISLDAPNLIYY 238
Query: 879 A----CLGLPPDVSLETL----LSLCTASFTWSVTRSDQRASYIHSAHKIVAGHHNVTEL 724
LG P+V L++L L+L R+ S ++ G NV L
Sbjct: 239 KHSGYVLGKYPNVKLDSLIEARLNLRMDETRMVGVRNGSLGSIPADMRNLINGIRNVRIL 298
Query: 723 SLYDFYIEAL--TSRDPVCLPTYSTLKHLHLHMLPIENQVQAVIVLLKRTPNLQTL 562
L +E L + ++ +P + +L L + Q + +L+K +PNL+TL
Sbjct: 299 HLSSHTLELLYFSCKE---MPLFDSLVSLSIGNDKARGW-QMLPLLIKNSPNLETL 350
Score = 32.0 bits (71), Expect(2) = 7e-19
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -1
Query: 458 LLKIESFQGTESEFRLVRHLFENGNAMERMNICHSKEMTEAGRTGFSEKPMKLARVSTEV 279
+L+I S+QGT E ++H E +E + IC T M L R S++
Sbjct: 387 VLEILSYQGTTRELNQMKHFLEKLPCLELVKICVVNNSNNLQTTMEMRNLMMLPRASSKC 446
Query: 278 KI 273
KI
Sbjct: 447 KI 448
>ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794867 [Glycine max]
Length = 833
Score = 101 bits (251), Expect = 8e-19
Identities = 85/264 (32%), Positives = 124/264 (46%), Gaps = 17/264 (6%)
Frame = -3
Query: 1569 MDRISYLPGPIQSHVLSFLP-MEDAFRTSILSKQWR*VCFSLSNLTFDQHSFMQKKNSGD 1393
+DRIS P + H+LS L + DA RTS+LSK+WR + +S S L FD+ F K D
Sbjct: 159 VDRISQFPDHVIHHILSHLRNVNDAIRTSVLSKRWRELWYSYSVLIFDERKFAAKIGHED 218
Query: 1392 -------FADFVNQML--SHCDGLAIINFEVNNNDYMYPVSVPDLNAWEMCAVDHNVQKL 1240
F D+V+ L S+ L I ++ + P L W A+ N+++L
Sbjct: 219 SSNKGMMFRDYVSNSLLTSNAKNLQIRKLVLHMTSFDLLEDAPCLELWLNIAIYRNIKEL 278
Query: 1239 CIH-GVSTKDAAELSGDLFTCISLTSLTLENFVLDLPRTVGFPLLKTLKFDHVMIPSENL 1063
+H G+ + L +F+ +LT + L L + P L+ L + + EN
Sbjct: 279 DLHVGIKNGECYTLPQTVFSSKTLTGIRLSGCKLGTCNNIKLPYLQKLYLRKIPL-VENF 337
Query: 1062 INKLFSNCHVLENLAIRRCNFVTFNYREPLNIFVPNLKRLSLLFMH---SYKKTDISAPN 892
I L S CH +E+L I +C+ + ++ V NL RL +H KK +ISAPN
Sbjct: 338 IQNLISCCHSVEDLRIIKCSGLK-------HLHVSNLIRLKRAEIHHCIQLKKVEISAPN 390
Query: 891 LKQFACLG---LPPDVSLETLLSL 829
L F G P VSLE SL
Sbjct: 391 LDTFWYCGKKTSPCKVSLEGCTSL 414
>ref|NP_181801.1| F-box protein [Arabidopsis thaliana] gi|4512680|gb|AAD21734.1|
hypothetical protein [Arabidopsis thaliana]
gi|330255067|gb|AEC10161.1| F-box protein [Arabidopsis
thaliana]
Length = 737
Score = 90.1 bits (222), Expect(2) = 5e-18
Identities = 92/356 (25%), Positives = 155/356 (43%), Gaps = 21/356 (5%)
Frame = -3
Query: 1566 DRISYLPGPIQSHVLSFLPMEDAFRTSILSKQWR*VCFSLSNLTFDQHSFMQKKNSG--- 1396
D IS LP + +LS + ++A TS+LSK+W+ + +SNL D + K
Sbjct: 5 DVISRLPDEVLGRILSLISTKEAVSTSVLSKRWKNMFVLVSNLDIDDRQSVPKTKQNRIE 64
Query: 1395 ---DFADFVNQMLSHCDGLAIINFEVNNN-DYMYPVSVPDLNAWEMCAVDHNVQKLCIHG 1228
++ FV+++L G +I + ++ + +W +DH V L +
Sbjct: 65 IHRNYMAFVDKLLDTQRGSSIKKLTLKSHVGVRGGTDSSRIQSWICNVLDHGVMDLDVFI 124
Query: 1227 VSTKDAAELSGDLFTCISLTSLTL-ENFVLDLPRTVGFPLLKTLKFDHV-MIPSENLINK 1054
+ + +F +L L + F + L + V PLL+TL D V + N++
Sbjct: 125 TLKGKSPPVPAMIFKSKTLVKLRVGRGFTIKLSQDVSLPLLRTLCLDSVNFVGGHNVVGT 184
Query: 1053 LFSNCHVLENLAI--RRCNFVTFNYREPLNIFVPNLKRLSLLFMHSYKKTDISAPNLKQF 880
L S C VLE L + RRC T ++ P+LKRL + F + + APNL +
Sbjct: 185 LISRCPVLEELVVEERRCVDWT------CSVSSPSLKRLHIRFDRKFTSISLDAPNLIYY 238
Query: 879 A----CLGLPPDVSLETL----LSLCTASFTWSVTRSDQRASYIHSAHKIVAGHHNVTEL 724
LG P+V L++L L+L R+ S ++ G NV L
Sbjct: 239 KHSGYVLGKYPNVKLDSLIEARLNLRMDETRMVGVRNGSLGSIPADMRNLINGIRNVRIL 298
Query: 723 SLYDFYIEAL--TSRDPVCLPTYSTLKHLHLHMLPIENQVQAVIVLLKRTPNLQTL 562
L +E L + ++ +P + +L L + Q + +L+K +PNL+TL
Sbjct: 299 HLSSHTLELLYFSCKE---MPLFDSLVSLSIGNDKARGW-QMLPLLIKNSPNLETL 350
Score = 29.3 bits (64), Expect(2) = 5e-18
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -1
Query: 458 LLKIESFQGTESEFRLVRHLFENGNAMERMNICHSKEMTEAGRTGFSEKPMKLARVSTEV 279
+L+I S+QGT E ++H E +E + IC T M L R S++
Sbjct: 387 VLEILSYQGTTRELNQMKHFLEKLPCLELVKICVVNNSNNLQTTMEMRNLMMLPRASSKY 446
Query: 278 K 276
+
Sbjct: 447 R 447
>ref|XP_003588839.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
gi|355477887|gb|AES59090.1| F-box/FBD/LRR-repeat protein
[Medicago truncatula]
Length = 532
Score = 98.2 bits (243), Expect = 7e-18
Identities = 93/356 (26%), Positives = 168/356 (47%), Gaps = 14/356 (3%)
Frame = -3
Query: 1581 IRMEMDRISYLPGPIQSHVLSFLPMEDAFRTSILSKQWR*VCFSLSNLTFDQHSFMQKKN 1402
I +E DRIS LPG + +LS+LP+ +A +TS+LS +WR +L N+ FD + +
Sbjct: 51 IGVEPDRISCLPGHVIDQILSYLPIREAVKTSVLSSEWRNKWHTLPNIVFDLNCVSNIEA 110
Query: 1401 SGDFADFVNQMLSHCDGLAIIN------FEVNNN--DYMYPVSVPDLNAWEMCAVDHNVQ 1246
D + F++++L D + +++ F++++ D SV D++ W + + +++
Sbjct: 111 IKDPSIFMSKLLRIVDHVLLLHSGPINKFQLSDPGCDLSDVNSVADIDRWILRLTEKSIK 170
Query: 1245 KLCIHGVSTKDAAELSGDLFTCISLTSLTLENFVLDLPRTV-GFPLLKTLKFDHVMIPSE 1069
+ + K ++ LF+C SL +L L+ + P T GF LK+L+ V + ++
Sbjct: 171 EFVLQIFVAKKYYKIPQCLFSCQSLQNLKLDCCCIQPPTTFKGFKNLKSLELYQVTM-AQ 229
Query: 1068 NLINKLFSNCHVLENLAIRRCNFVTFNYREPLNIFVPNLKRLSLLFMHSYKKTDISAPNL 889
+ L S CH+LE+L LL++ + +I APNL
Sbjct: 230 DAFENLISGCHLLEDL--------------------------KLLYLEGLTQLNIHAPNL 263
Query: 888 KQFACLGLPPDVSLETLLSLCTASFTWSVTRSD--QRASYIHSAHKIVAGHHNVTELSLY 715
K+F +G D S + L +RS+ Q + + A ++ L +
Sbjct: 264 KKFLIVGDFVDFSFDNTFQLTELGLFSFDSRSNHSQLRGCSSNLLRFFAHLPHIESLVIS 323
Query: 714 DFYIEALTSRD-PVCLPT-YSTLKHLHLHMLPIE-NQVQAVIVLLKRTPNLQTLGI 556
+++ L + D PV LPT L L + + + Q+ A + LL+ +PNL+ L I
Sbjct: 324 SQFLKYLDAGDVPVKLPTPCINLSSLFICIRFNDLKQILAALCLLRSSPNLRRLEI 379