BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013303
         (324 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517667.1| pentatricopeptide repeat-containing protein,...   155   4e-36
emb|CBI38165.3| unnamed protein product [Vitis vinifera]              152   2e-35
ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containi...   152   2e-35
ref|XP_003602631.1| Pentatricopeptide repeat-containing protein ...   142   3e-32
ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containi...   140   1e-31

>ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543299|gb|EEF44831.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 628

 Score =  155 bits (391), Expect = 4e-36
 Identities = 70/107 (65%), Positives = 88/107 (82%)
 Frame = -3

Query: 322 MVSDLSIPDSTLFADILKTCLKTKSIRDSTKVHARIIKTQFASEIFIQNRLIDVYAKCGC 143
           +V DLS  DS+ FA +L +CLK+KS+RD+ ++HARIIKTQFA E+FIQNRLID Y KCGC
Sbjct: 10  IVGDLSFLDSSPFAKLLDSCLKSKSLRDTRRIHARIIKTQFAYEVFIQNRLIDAYGKCGC 69

Query: 142 LKDSRKLFDKMPHKNTFTWNSIITALTKSGFLDEAFKLFKSMPEPDQ 2
             D+RK+FD+MP KN F+WN+I++ L KSGFLDE  +LF SMPEPDQ
Sbjct: 70  FDDARKIFDQMPEKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQ 116



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 31/92 (33%), Positives = 57/92 (61%)
 Frame = -3

Query: 286 FADILKTCLKTKSIRDSTKVHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMP 107
           F   L  C   K ++  T++H  ++K+QF  ++++ + LID+Y+KCG +  ++++FD M 
Sbjct: 154 FGSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIYSKCGFVDCAQRVFDGMM 213

Query: 106 HKNTFTWNSIITALTKSGFLDEAFKLFKSMPE 11
            +N  +WNS+IT   ++G   EA ++F  M E
Sbjct: 214 ERNVVSWNSLITCYEQNGPSREALEIFMRMME 245



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
 Frame = -3

Query: 301 PDSTLFADILKTCLKTKSIRDSTKVHARIIKTQFA------SEIFIQNRLIDVYAKCGCL 140
           P    F ++L  C     ++   + HA ++K  F       S++F+ N LID+Y KCG +
Sbjct: 383 PTHYTFGNLLNACANLADLQLGRQAHAHVLKHGFRFQYGEESDVFVGNALIDMYMKCGSV 442

Query: 139 KDSRKLFDKMPHKNTFTWNSIITALTKSGFLDEAFKLFKSM 17
           ++  ++F+ M  ++  +WN++I    ++G+  EA  LF+ M
Sbjct: 443 EEGCRIFENMVERDYVSWNAMIVGYAQNGYGMEALGLFRKM 483



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
 Frame = -3

Query: 301 PDSTLFADILKTCLKTKSIRDSTKVHARIIKT-QFASEIFIQNRLIDVYAKCGCLKDSRK 125
           PD    A ++  C    + +   ++HA ++K  +   ++ + N L+D+YAKCG + ++R 
Sbjct: 250 PDEVTLASVVSACASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAKCGRINEARC 309

Query: 124 LFDKMPHKNTFTWNSIITALTKSGFLDEAFKLFKSMPE 11
           +FD+MP +N  +  S+++   K+  +  A  LF  M E
Sbjct: 310 VFDRMPIRNVVSETSMVSGYAKTASVKAARLLFTKMIE 347


>emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  152 bits (385), Expect = 2e-35
 Identities = 71/107 (66%), Positives = 89/107 (83%)
 Frame = -3

Query: 322 MVSDLSIPDSTLFADILKTCLKTKSIRDSTKVHARIIKTQFASEIFIQNRLIDVYAKCGC 143
           +V DL +P+S+ FA +L +CL+++S R +  VHARI+ TQF+ EIFIQNRLIDVY KC C
Sbjct: 6   LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDC 65

Query: 142 LKDSRKLFDKMPHKNTFTWNSIITALTKSGFLDEAFKLFKSMPEPDQ 2
           L D+RKLFD+MP +NTFTWNS+I+ LTKSGFLDEA +LF SMPEPDQ
Sbjct: 66  LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQ 112



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
 Frame = -3

Query: 286 FADILKTCLKTKSIRDSTKVHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMP 107
           F   L  C     +   T+VHA + K+++++++++ + LID+Y+KCG +  + ++F  M 
Sbjct: 150 FGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMI 209

Query: 106 HKNTFTWNSIITALTKSGFLDEAFKLFKSMP----EPDQ 2
            +N  TWNS+IT   ++G   EA ++F  M     EPD+
Sbjct: 210 ERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDE 248



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 32/125 (25%)
 Frame = -3

Query: 301 PDSTLFADILKTCLKTKSIRDSTKVHARIIKT-QFASEIFIQNRLIDVYAKCGCLKDSRK 125
           PD    A ++  C    ++++  ++HAR++KT +F  ++ + N L+D+YAKC  + ++R+
Sbjct: 246 PDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARR 305

Query: 124 LFD-------------------------------KMPHKNTFTWNSIITALTKSGFLDEA 38
           +FD                               KM  +N  +WN++I   T++G  +EA
Sbjct: 306 VFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEA 365

Query: 37  FKLFK 23
            +LF+
Sbjct: 366 LRLFR 370



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 29/82 (35%), Positives = 51/82 (62%)
 Frame = -3

Query: 262 LKTKSIRDSTKVHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKNTFTWN 83
           LK +SI  +      ++K    S+IF+ N LID+Y KCG ++D  ++F+KM  ++  +WN
Sbjct: 372 LKRESIWPTHYTFGNLLK----SDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWN 427

Query: 82  SIITALTKSGFLDEAFKLFKSM 17
           +II    ++G+  EA ++F+ M
Sbjct: 428 AIIVGYAQNGYGAEALQIFRKM 449


>ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  152 bits (385), Expect = 2e-35
 Identities = 71/107 (66%), Positives = 89/107 (83%)
 Frame = -3

Query: 322 MVSDLSIPDSTLFADILKTCLKTKSIRDSTKVHARIIKTQFASEIFIQNRLIDVYAKCGC 143
           +V DL +P+S+ FA +L +CL+++S R +  VHARI+ TQF+ EIFIQNRLIDVY KC C
Sbjct: 6   LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDC 65

Query: 142 LKDSRKLFDKMPHKNTFTWNSIITALTKSGFLDEAFKLFKSMPEPDQ 2
           L D+RKLFD+MP +NTFTWNS+I+ LTKSGFLDEA +LF SMPEPDQ
Sbjct: 66  LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQ 112



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
 Frame = -3

Query: 301 PDSTLFADILKTCLKTKSIRDSTKVHARIIKTQFA------SEIFIQNRLIDVYAKCGCL 140
           P    F ++L  C     +    + H  ++K  F       S+IF+ N LID+Y KCG +
Sbjct: 379 PTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSI 438

Query: 139 KDSRKLFDKMPHKNTFTWNSIITALTKSGFLDEAFKLFKSM 17
           +D  ++F+KM  ++  +WN+II    ++G+  EA ++F+ M
Sbjct: 439 EDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKM 479



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
 Frame = -3

Query: 286 FADILKTCLKTKSIRDSTKVHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMP 107
           F   L  C     +   T+VHA + K+++++++++ + LID+Y+KCG +  + ++F  M 
Sbjct: 150 FGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMI 209

Query: 106 HKNTFTWNSIITALTKSGFLDEAFKLFKSMP----EPDQ 2
            +N  TWNS+IT   ++G   EA ++F  M     EPD+
Sbjct: 210 ERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDE 248



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 32/125 (25%)
 Frame = -3

Query: 301 PDSTLFADILKTCLKTKSIRDSTKVHARIIKT-QFASEIFIQNRLIDVYAKCGCLKDSRK 125
           PD    A ++  C    ++++  ++HAR++KT +F  ++ + N L+D+YAKC  + ++R+
Sbjct: 246 PDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARR 305

Query: 124 LFD-------------------------------KMPHKNTFTWNSIITALTKSGFLDEA 38
           +FD                               KM  +N  +WN++I   T++G  +EA
Sbjct: 306 VFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEA 365

Query: 37  FKLFK 23
            +LF+
Sbjct: 366 LRLFR 370


>ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355491679|gb|AES72882.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  142 bits (358), Expect = 3e-32
 Identities = 68/107 (63%), Positives = 86/107 (80%)
 Frame = -3

Query: 322 MVSDLSIPDSTLFADILKTCLKTKSIRDSTKVHARIIKTQFASEIFIQNRLIDVYAKCGC 143
           +V DLS  DS+ FA +L TC+K+KS+ ++  VHARIIKTQF+SEIFIQNRL+DVY KCG 
Sbjct: 10  VVGDLSFLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGF 69

Query: 142 LKDSRKLFDKMPHKNTFTWNSIITALTKSGFLDEAFKLFKSMPEPDQ 2
           L+D+RK+FD M  +NTF+WN+++ ALTK G LDEA  LFK MPE DQ
Sbjct: 70  LEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQ 116



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
 Frame = -3

Query: 301 PDSTLFADILKTCLKTKSIRDSTKVHARIIKTQF------ASEIFIQNRLIDVYAKCGCL 140
           P    F ++L  C     ++   + H  I+K  F       S+IF+ N LID+Y KCG +
Sbjct: 383 PTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLV 442

Query: 139 KDSRKLFDKMPHKNTFTWNSIITALTKSGFLDEAFKLFKSM 17
           +D R +F++M  ++  +WN++I    ++G+  EA ++F+ M
Sbjct: 443 EDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREM 483



 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 28/98 (28%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
 Frame = -3

Query: 301 PDSTLFADILKTCLKTKSIRDSTKVHARIIK-TQFASEIFIQNRLIDVYAKCGCLKDSRK 125
           PD    A +   C    +IR+  ++HAR++K  ++ +++ + N L+D+YAKC  + ++R 
Sbjct: 250 PDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARL 309

Query: 124 LFDKMPHKNTFTWNSIITALTKSGFLDEAFKLFKSMPE 11
           +FD+MP ++  +  S+++   K+  +  A  +F +M E
Sbjct: 310 VFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMME 347



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 27/99 (27%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
 Frame = -3

Query: 286 FADILKTCLKTKSIRDSTKVHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMP 107
           F   L  C     +    ++H  I K++++ ++++ + L+D+Y+KC  +  +++ FD M 
Sbjct: 154 FGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMD 213

Query: 106 HKNTFTWNSIITALTKSGFLDEAFKLFKSMP----EPDQ 2
            +N  +WNS+IT   ++G   +A ++F  M     EPD+
Sbjct: 214 VRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDE 252


>ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  140 bits (352), Expect = 1e-31
 Identities = 63/107 (58%), Positives = 88/107 (82%)
 Frame = -3

Query: 322 MVSDLSIPDSTLFADILKTCLKTKSIRDSTKVHARIIKTQFASEIFIQNRLIDVYAKCGC 143
           +V +L   DS+ FA +L +C+++KS  D+ ++HARIIKTQF+SEIFIQNRL+D Y KCG 
Sbjct: 10  LVGELCFLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGY 69

Query: 142 LKDSRKLFDKMPHKNTFTWNSIITALTKSGFLDEAFKLFKSMPEPDQ 2
            +D+RK+FD+MP +NTF++N++++ LTK G LDEAF +FKSMPEPDQ
Sbjct: 70  FEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQ 116



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 28/98 (28%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
 Frame = -3

Query: 301 PDSTLFADILKTCLKTKSIRDSTKVHARIIKT-QFASEIFIQNRLIDVYAKCGCLKDSRK 125
           PD    A ++  C    +IR+  ++HAR++K  ++ +++ + N L+D+YAKC  + ++R 
Sbjct: 250 PDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARL 309

Query: 124 LFDKMPHKNTFTWNSIITALTKSGFLDEAFKLFKSMPE 11
           +FD+MP +N  +  S++    ++  +  A  +F +M E
Sbjct: 310 VFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMME 347



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
 Frame = -3

Query: 301 PDSTLFADILKTCLKTKSIRDSTKVHARIIKTQF------ASEIFIQNRLIDVYAKCGCL 140
           P    F ++L  C     ++   + H +I+K  F       S+IF+ N LID+Y KCG +
Sbjct: 383 PTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMV 442

Query: 139 KDSRKLFDKMPHKNTFTWNSIITALTKSGFLDEAFKLFKSM 17
           +D   +F++M  ++  +WN++I    ++G+   A ++F+ M
Sbjct: 443 EDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKM 483



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 29/99 (29%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
 Frame = -3

Query: 286 FADILKTCLKTKSIRDSTKVHARIIKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMP 107
           F   L  C     +    ++HA I K+++  ++++ + L+D+Y+KCG +  +++ FD M 
Sbjct: 154 FGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMA 213

Query: 106 HKNTFTWNSIITALTKSGFLDEAFKLFKSM----PEPDQ 2
            +N  +WNS+IT   ++G   +A ++F  M     EPD+
Sbjct: 214 VRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDE 252