BLASTX nr result
ID: Coptis21_contig00013183
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00013183
(756 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containi... 346 3e-93
emb|CBI19955.3| unnamed protein product [Vitis vinifera] 346 3e-93
gb|AER41645.1| CRR4 [Oryza punctata] 286 3e-75
gb|AER41656.1| CRR4 [Oryza rufipogon] 284 1e-74
gb|AER41630.1| CRR4 [Oryza nivara] 284 1e-74
>ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 346 bits (887), Expect = 3e-93
Identities = 170/251 (67%), Positives = 204/251 (81%)
Frame = -1
Query: 753 VGRVGEEIEAQSIFECMPVRNEVSWNTMISGYVGKGDIRNAKLVFDRMPEKSVVSWTAMI 574
+ + G A S+FE MP+RNEVSWN+MISGYV GD+R A+ +F +MPEK+VVSWTAMI
Sbjct: 182 LSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMI 241
Query: 573 SGYAKVGELSSANNLFGLMPVKNVVTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNE 394
SGYA G+L SA N+F MPVKNVV+WNAMI+GYV N+ FD+AL +FH ML NGEC P++
Sbjct: 242 SGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQ 301
Query: 393 ATLGSVLSACGRLGALEQGKWIDSYMKKNGSNLSNVLGNALIDMFAKCGDIEFAIEVFHC 214
TL S+LSAC LG+LE GKWI+SY+KKN +LS LGNALIDMFAKCGD+E A EVFH
Sbjct: 302 TTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHH 361
Query: 213 VTDRCIITWTTMVSGLALNGKFREALSLFDIMCRERIEPDCVIFTAVLSACSHGGLVEEG 34
++ RCIITWTTMVSGLA+NGK REA++LFD MC E +PD VIF AVLSAC+HGGLVEEG
Sbjct: 362 MSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEG 421
Query: 33 QRVFKQMVMQF 1
+RVF QMV +F
Sbjct: 422 KRVFDQMVQEF 432
Score = 110 bits (276), Expect = 2e-22
Identities = 67/218 (30%), Positives = 117/218 (53%), Gaps = 2/218 (0%)
Frame = -1
Query: 678 NTMISGYVGKGD-IRNAKLVFDRMPEKSVVSWTAMISGYAKVGELSSANNLFGLMPVKNV 502
N+++ Y + + +A VF+ MPE+ V+SW +MIS Y GE+ SA L MP +N+
Sbjct: 113 NSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNI 172
Query: 501 VTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNEATLGSVLSACGRLGALEQGKWIDS 322
VTWN+++ G + + A S+F +M NE + S++S R+G + + I
Sbjct: 173 VTWNSVVCGLSKAGNMELAHSVFEQMPLR-----NEVSWNSMISGYVRIGDVRAAQSIFY 227
Query: 321 YMKKNGSNLSNVLGNALIDMFAKCGDIEFAIEVFHCVTDRCIITWTTMVSGLALNGKFRE 142
M + + V A+I +A GD++ A +F+ + + +++W M+SG N +F +
Sbjct: 228 QMPEK----TVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQ 283
Query: 141 ALSLF-DIMCRERIEPDCVIFTAVLSACSHGGLVEEGQ 31
AL +F ++ PD ++LSAC+H G +E G+
Sbjct: 284 ALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGK 321
>emb|CBI19955.3| unnamed protein product [Vitis vinifera]
Length = 488
Score = 346 bits (887), Expect = 3e-93
Identities = 170/251 (67%), Positives = 204/251 (81%)
Frame = -1
Query: 753 VGRVGEEIEAQSIFECMPVRNEVSWNTMISGYVGKGDIRNAKLVFDRMPEKSVVSWTAMI 574
+ + G A S+FE MP+RNEVSWN+MISGYV GD+R A+ +F +MPEK+VVSWTAMI
Sbjct: 118 LSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMI 177
Query: 573 SGYAKVGELSSANNLFGLMPVKNVVTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNE 394
SGYA G+L SA N+F MPVKNVV+WNAMI+GYV N+ FD+AL +FH ML NGEC P++
Sbjct: 178 SGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQ 237
Query: 393 ATLGSVLSACGRLGALEQGKWIDSYMKKNGSNLSNVLGNALIDMFAKCGDIEFAIEVFHC 214
TL S+LSAC LG+LE GKWI+SY+KKN +LS LGNALIDMFAKCGD+E A EVFH
Sbjct: 238 TTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHH 297
Query: 213 VTDRCIITWTTMVSGLALNGKFREALSLFDIMCRERIEPDCVIFTAVLSACSHGGLVEEG 34
++ RCIITWTTMVSGLA+NGK REA++LFD MC E +PD VIF AVLSAC+HGGLVEEG
Sbjct: 298 MSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEG 357
Query: 33 QRVFKQMVMQF 1
+RVF QMV +F
Sbjct: 358 KRVFDQMVQEF 368
Score = 110 bits (276), Expect = 2e-22
Identities = 67/218 (30%), Positives = 117/218 (53%), Gaps = 2/218 (0%)
Frame = -1
Query: 678 NTMISGYVGKGD-IRNAKLVFDRMPEKSVVSWTAMISGYAKVGELSSANNLFGLMPVKNV 502
N+++ Y + + +A VF+ MPE+ V+SW +MIS Y GE+ SA L MP +N+
Sbjct: 49 NSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNI 108
Query: 501 VTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNEATLGSVLSACGRLGALEQGKWIDS 322
VTWN+++ G + + A S+F +M NE + S++S R+G + + I
Sbjct: 109 VTWNSVVCGLSKAGNMELAHSVFEQMPLR-----NEVSWNSMISGYVRIGDVRAAQSIFY 163
Query: 321 YMKKNGSNLSNVLGNALIDMFAKCGDIEFAIEVFHCVTDRCIITWTTMVSGLALNGKFRE 142
M + + V A+I +A GD++ A +F+ + + +++W M+SG N +F +
Sbjct: 164 QMPEK----TVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQ 219
Query: 141 ALSLF-DIMCRERIEPDCVIFTAVLSACSHGGLVEEGQ 31
AL +F ++ PD ++LSAC+H G +E G+
Sbjct: 220 ALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGK 257
>gb|AER41645.1| CRR4 [Oryza punctata]
Length = 632
Score = 286 bits (733), Expect = 3e-75
Identities = 136/249 (54%), Positives = 182/249 (73%)
Frame = -1
Query: 747 RVGEEIEAQSIFECMPVRNEVSWNTMISGYVGKGDIRNAKLVFDRMPEKSVVSWTAMISG 568
R G+ + A+++F+ MP RN VSWN MISGY GD+ A+ VFDRM +K VVSWTAM+S
Sbjct: 224 RTGDMVTARTVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSA 283
Query: 567 YAKVGELSSANNLFGLMPVKNVVTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNEAT 388
YAK+G+L +A LF MPVKN+V+WNAMI GY N+ +DEAL F M+ G P+EAT
Sbjct: 284 YAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEAT 343
Query: 387 LGSVLSACGRLGALEQGKWIDSYMKKNGSNLSNVLGNALIDMFAKCGDIEFAIEVFHCVT 208
L SV+SAC +LG++E WI S++ K+ ++L+ LGNALIDMFAKCGD+ A +F+ +
Sbjct: 344 LVSVVSACAQLGSVEYCNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQSIFYKME 403
Query: 207 DRCIITWTTMVSGLALNGKFREALSLFDIMCRERIEPDCVIFTAVLSACSHGGLVEEGQR 28
RCIITWTTM+SG A NG REAL +++ MCRE +E D +F A L+AC+HGGL++EG
Sbjct: 404 TRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHGGLLQEGWS 463
Query: 27 VFKQMVMQF 1
+F +MV Q+
Sbjct: 464 IFNEMVEQY 472
Score = 119 bits (299), Expect = 5e-25
Identities = 69/238 (28%), Positives = 116/238 (48%), Gaps = 1/238 (0%)
Frame = -1
Query: 750 GRVGEEIEAQSIFECMPVRNEVSWNTMISGYVGKGDIRNAKLVFDRMPEKSVVSWTAMIS 571
G G A+ +F+ M ++ VSWN+++ Y+ GD A +F+ MPE++VVSW +++
Sbjct: 161 GGAGGVGAARQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVA 220
Query: 570 GYAKVGELSSANNLFGLMPVKNVVTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNEA 391
G+A+ G++ +A +F MP +N V+WN MI+GY + + A S+F M
Sbjct: 221 GFARTGDMVTARTVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRM----------- 269
Query: 390 TLGSVLSACGRLGALEQGKWIDSYMKKNGSNLSNVLGNALIDMFAKCGDIEFAIEVFHCV 211
V A++ +AK GD++ A E+F +
Sbjct: 270 -----------------------------DQKDVVSWTAMVSAYAKIGDLDTAKELFDHM 300
Query: 210 TDRCIITWTTMVSGLALNGKFREALSLFDIMCRE-RIEPDCVIFTAVLSACSHGGLVE 40
+ +++W M++G N ++ EAL F +M E R PD +V+SAC+ G VE
Sbjct: 301 PVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVE 358
Score = 72.4 bits (176), Expect = 1e-10
Identities = 72/285 (25%), Positives = 121/285 (42%), Gaps = 40/285 (14%)
Frame = -1
Query: 747 RVGEEIEAQSIFECMPVRNEVSWNTMISGYVGKGDIRNAKLVFDRM-------PEK---- 601
++G+ A+ +F+ MPV+N VSWN MI+GY A F M P++
Sbjct: 286 KIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLV 345
Query: 600 SVVS------------W-----------------TAMISGYAKVGELSSANNLFGLMPVK 508
SVVS W A+I +AK G++ A ++F M +
Sbjct: 346 SVVSACAQLGSVEYCNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQSIFYKMETR 405
Query: 507 NVVTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNEATLGSVLSACGRLGALEQGKWI 328
++TW MI+G+ N + EAL +++ M G + + L+AC G L++G W
Sbjct: 406 CIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAA-LAACTHGGLLQEG-WS 463
Query: 327 DSYMKKNGSNLSNVLGNALIDMFAKCGDIEFAIEVFHCVTDRCIITWTTMVSGLALNGKF 148
+ N +++ + +I+ +E + CV D L G
Sbjct: 464 --------------IFNEMVEQY----NIQPRMEHYGCVVDL-----------LGRAGNL 494
Query: 147 REALSLFDIMCRERIEPDCVIFTAVLSACSHGGLVEEGQRVFKQM 13
+EA+ + M +EP VI+ +LS+C G E + V K++
Sbjct: 495 QEAILFIESM---PLEPSVVIWVTLLSSCVAHGNAELIEYVSKKI 536
>gb|AER41656.1| CRR4 [Oryza rufipogon]
Length = 752
Score = 284 bits (727), Expect = 1e-74
Identities = 134/249 (53%), Positives = 183/249 (73%)
Frame = -1
Query: 747 RVGEEIEAQSIFECMPVRNEVSWNTMISGYVGKGDIRNAKLVFDRMPEKSVVSWTAMISG 568
R+G+ + A+++F+ MP RN VSWN MISGY GD+ A+ VFDRM +K VVSWTAM+S
Sbjct: 227 RMGDMVTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSA 286
Query: 567 YAKVGELSSANNLFGLMPVKNVVTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNEAT 388
YAK+G+L +AN LF MPVKN+V+WNAMI GY N+ +DEAL F M+ G P+EAT
Sbjct: 287 YAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEAT 346
Query: 387 LGSVLSACGRLGALEQGKWIDSYMKKNGSNLSNVLGNALIDMFAKCGDIEFAIEVFHCVT 208
L SV+SAC +LG++E WI S++ K+ +L+ LGNALIDMFAKCGD+ A +F+ +
Sbjct: 347 LVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYKME 406
Query: 207 DRCIITWTTMVSGLALNGKFREALSLFDIMCRERIEPDCVIFTAVLSACSHGGLVEEGQR 28
RCIITWTTM+SG A NG R+AL +++ MCRE ++ D +F A L+AC+HGGL++EG
Sbjct: 407 TRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWS 466
Query: 27 VFKQMVMQF 1
+F +MV ++
Sbjct: 467 IFNEMVERY 475
Score = 104 bits (259), Expect = 2e-20
Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 1/206 (0%)
Frame = -1
Query: 654 GKGDIRNAKLVFDRMPEKSVVSWTAMISGYAKVGELSSANNLFGLMPVKNVVTWNAMIAG 475
G G + A+ VFD M ++ VVSW +++ Y G+ + A F MP +NVV+WN ++AG
Sbjct: 165 GGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAG 224
Query: 474 YVQNNMFDEALSLFHEMLSNGECTPNEATLGSVLSACGRLGALEQGKWIDSYMKKNGSNL 295
+ + A ++F M S N + ++S G +E + + M +
Sbjct: 225 FARMGDMVTARAVFDRMPSR-----NAVSWNLMISGYATSGDVEAARSVFDRMDQK---- 275
Query: 294 SNVLGNALIDMFAKCGDIEFAIEVFHCVTDRCIITWTTMVSGLALNGKFREALSLFDIMC 115
V A++ +AK GD++ A E+F + + +++W M++G N ++ EAL F +M
Sbjct: 276 DVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMM 335
Query: 114 RE-RIEPDCVIFTAVLSACSHGGLVE 40
E R PD +V+SAC+ G VE
Sbjct: 336 LEGRFRPDEATLVSVVSACAQLGSVE 361
>gb|AER41630.1| CRR4 [Oryza nivara]
Length = 748
Score = 284 bits (727), Expect = 1e-74
Identities = 134/249 (53%), Positives = 183/249 (73%)
Frame = -1
Query: 747 RVGEEIEAQSIFECMPVRNEVSWNTMISGYVGKGDIRNAKLVFDRMPEKSVVSWTAMISG 568
R+G+ + A+++F+ MP RN VSWN MISGY GD+ A+ VFDRM +K VVSWTAM+S
Sbjct: 223 RMGDMVTARAVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSA 282
Query: 567 YAKVGELSSANNLFGLMPVKNVVTWNAMIAGYVQNNMFDEALSLFHEMLSNGECTPNEAT 388
YAK+G+L +AN LF MPVKN+V+WNAMI GY N+ +DEAL F M+ G P+EAT
Sbjct: 283 YAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEAT 342
Query: 387 LGSVLSACGRLGALEQGKWIDSYMKKNGSNLSNVLGNALIDMFAKCGDIEFAIEVFHCVT 208
L SV+SAC +LG++E WI S++ K+ +L+ LGNALIDMFAKCGD+ A +F+ +
Sbjct: 343 LVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYKME 402
Query: 207 DRCIITWTTMVSGLALNGKFREALSLFDIMCRERIEPDCVIFTAVLSACSHGGLVEEGQR 28
RCIITWTTM+SG A NG R+AL +++ MCRE ++ D +F A L+AC+HGGL++EG
Sbjct: 403 TRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWS 462
Query: 27 VFKQMVMQF 1
+F +MV ++
Sbjct: 463 IFNEMVERY 471
Score = 104 bits (259), Expect = 2e-20
Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 1/206 (0%)
Frame = -1
Query: 654 GKGDIRNAKLVFDRMPEKSVVSWTAMISGYAKVGELSSANNLFGLMPVKNVVTWNAMIAG 475
G G + A+ VFD M ++ VVSW +++ Y G+ + A F MP +NVV+WN ++AG
Sbjct: 161 GGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAG 220
Query: 474 YVQNNMFDEALSLFHEMLSNGECTPNEATLGSVLSACGRLGALEQGKWIDSYMKKNGSNL 295
+ + A ++F M S N + ++S G +E + + M +
Sbjct: 221 FARMGDMVTARAVFDRMPSR-----NAVSWNLMISGYATSGDVEAARSVFDRMDQK---- 271
Query: 294 SNVLGNALIDMFAKCGDIEFAIEVFHCVTDRCIITWTTMVSGLALNGKFREALSLFDIMC 115
V A++ +AK GD++ A E+F + + +++W M++G N ++ EAL F +M
Sbjct: 272 DVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMM 331
Query: 114 RE-RIEPDCVIFTAVLSACSHGGLVE 40
E R PD +V+SAC+ G VE
Sbjct: 332 LEGRFRPDEATLVSVVSACAQLGSVE 357