BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013160
         (267 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containi...    70   2e-10
ref|XP_002319940.1| predicted protein [Populus trichocarpa] gi|2...    69   5e-10
ref|XP_002514843.1| pentatricopeptide repeat-containing protein,...    68   7e-10
gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]             68   9e-10
ref|NP_172730.3| helicase domain and pentatricopeptide repeat-co...    68   9e-10

>ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
           gi|297735515|emb|CBI17955.3| unnamed protein product
           [Vitis vinifera]
          Length = 627

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 35/89 (39%), Positives = 55/89 (61%)
 Frame = -1

Query: 267 RIVDAQNVFNDMPIHELSPDIVTYGALLDGLFTHGCVSEAMELFLVMEKNGXXXXXXXXX 88
           ++ DA N+F +M +H+L+P+  TY  LLDGL  +  +SEAMELF  +E +          
Sbjct: 428 KVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFN 487

Query: 87  XXIDGMCKAGELSKAKEIFCSLTAKNLQP 1
             IDG+CKA ++  A+E+F  L+ + L+P
Sbjct: 488 CLIDGLCKARKIEIARELFNRLSHEGLEP 516



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 31/89 (34%), Positives = 48/89 (53%)
 Frame = -1

Query: 267 RIVDAQNVFNDMPIHELSPDIVTYGALLDGLFTHGCVSEAMELFLVMEKNGXXXXXXXXX 88
           R+V+A+ ++ +M   E+ P ++TY  LL GLF  G V +A  LF  M+ +          
Sbjct: 393 RMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYN 452

Query: 87  XXIDGMCKAGELSKAKEIFCSLTAKNLQP 1
             +DG+CK   LS+A E+F  L   + QP
Sbjct: 453 ILLDGLCKNNHLSEAMELFHYLENHDFQP 481


>ref|XP_002319940.1| predicted protein [Populus trichocarpa] gi|222858316|gb|EEE95863.1|
           predicted protein [Populus trichocarpa]
          Length = 555

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 36/89 (40%), Positives = 50/89 (56%)
 Frame = -1

Query: 267 RIVDAQNVFNDMPIHELSPDIVTYGALLDGLFTHGCVSEAMELFLVMEKNGXXXXXXXXX 88
           R ++A+ +F DM  +   P++VTY  LLD L   G + +AM LF  ME +G         
Sbjct: 421 RPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYN 480

Query: 87  XXIDGMCKAGELSKAKEIFCSLTAKNLQP 1
             IDGMCK G+   A+E+F  L+ K LQP
Sbjct: 481 IMIDGMCKYGKFKDARELFAELSVKGLQP 509


>ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545894|gb|EEF47397.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 594

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 34/85 (40%), Positives = 48/85 (56%)
 Frame = -1

Query: 255 AQNVFNDMPIHELSPDIVTYGALLDGLFTHGCVSEAMELFLVMEKNGXXXXXXXXXXXID 76
           A+ +F  M  H   PD++TY  LL G   HG + EA+ LF  ++K+            + 
Sbjct: 508 AKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLG 567

Query: 75  GMCKAGELSKAKEIFCSLTAKNLQP 1
           GMCKAG+L  AKE+F SL+ + LQP
Sbjct: 568 GMCKAGKLEDAKELFSSLSIEELQP 592



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 28/88 (31%), Positives = 47/88 (53%)
 Frame = -1

Query: 264 IVDAQNVFNDMPIHELSPDIVTYGALLDGLFTHGCVSEAMELFLVMEKNGXXXXXXXXXX 85
           + +AQ++ N M    L P++VTY +L+DG   H  + EA ++F +M   G          
Sbjct: 400 VSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNI 459

Query: 84  XIDGMCKAGELSKAKEIFCSLTAKNLQP 1
            I G CK+  + +AK++F  ++ K L P
Sbjct: 460 LIKGYCKSERIDEAKQLFDEMSHKGLTP 487


>gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 32/85 (37%), Positives = 52/85 (61%)
 Frame = -1

Query: 255 AQNVFNDMPIHELSPDIVTYGALLDGLFTHGCVSEAMELFLVMEKNGXXXXXXXXXXXID 76
           A+ +F +M  H + PD++TYG LLDGL  +G + +A+E+F  ++K+            I+
Sbjct: 412 AEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIE 471

Query: 75  GMCKAGELSKAKEIFCSLTAKNLQP 1
           GMCK G++  A  +FCSL  K ++P
Sbjct: 472 GMCKGGKVEDAWNLFCSLPCKGVKP 496


>ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana] gi|332190794|gb|AEE28915.1|
           helicase domain and pentatricopeptide repeat-containing
           protein [Arabidopsis thaliana]
          Length = 735

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 32/85 (37%), Positives = 52/85 (61%)
 Frame = -1

Query: 255 AQNVFNDMPIHELSPDIVTYGALLDGLFTHGCVSEAMELFLVMEKNGXXXXXXXXXXXID 76
           A+ +F +M  H + PD++TYG LLDGL  +G + +A+E+F  ++K+            I+
Sbjct: 422 AEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIE 481

Query: 75  GMCKAGELSKAKEIFCSLTAKNLQP 1
           GMCK G++  A  +FCSL  K ++P
Sbjct: 482 GMCKGGKVEDAWNLFCSLPCKGVKP 506