BLASTX nr result

ID: Coptis21_contig00013100 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013100
         (1915 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319493.1| predicted protein [Populus trichocarpa] gi|2...   350   6e-94
ref|XP_002330183.1| predicted protein [Populus trichocarpa] gi|2...   340   6e-91
ref|XP_002278421.1| PREDICTED: uncharacterized protein LOC100240...   339   2e-90
ref|XP_002512479.1| splicing factor, arginine/serine-rich 2,rnap...   311   5e-82
ref|NP_187218.1| RING/U-box protein [Arabidopsis thaliana] gi|67...   306   1e-80

>ref|XP_002319493.1| predicted protein [Populus trichocarpa] gi|222857869|gb|EEE95416.1|
            predicted protein [Populus trichocarpa]
          Length = 810

 Score =  350 bits (899), Expect = 6e-94
 Identities = 215/513 (41%), Positives = 285/513 (55%), Gaps = 43/513 (8%)
 Frame = +1

Query: 157  DDDFDLDYKAVRERNRTKSVIK----------DWVSDDSEPSDVEYTLSDEEKELLREAN 306
            D DF  D    RE+++  S ++          D+VS+ S  SD EYTLS+EE+E +REA+
Sbjct: 213  DGDFLADSPVAREKSKKTSGVRKRKFSVNSDSDFVSNGS--SDYEYTLSEEEREQVREAS 270

Query: 307  KFLGISTTCSRDSSLNGKLHKDGASKCLKPTPVERKGKQKVHELHIDTGKQVCGICFSEE 486
            +  G   T  R SS+  ++ ++G   C +  PV RKGK+KV E   + GKQVCGIC SEE
Sbjct: 271  QLYGELKTSLRSSSVGKRIQENG-DLCQQTKPVGRKGKEKVKEEKSELGKQVCGICLSEE 329

Query: 487  RKGIVRGTLNCCSHYFCYACIMEWSKIESRCPLCKQRFVTISMPERSKLGVELRSLVIPI 666
             K  +RGTL+CCSHYFC+ CIMEWSK+ESRCPLCKQRF TI+   RS +GV+LR++VI +
Sbjct: 330  DKRRLRGTLDCCSHYFCFTCIMEWSKVESRCPLCKQRFSTIAKNGRSAMGVDLRNMVIEV 389

Query: 667  PTRDQVYQPTEEEVMGYLDPYDGVVCIECQEGGDDSLMLLCDICDSPSHTYCVGLGQEVP 846
            P RDQVYQPTEEE+  Y+DPY+ V+C EC EGGDD LMLLCD+CDS +HTYCVGLG++VP
Sbjct: 390  PMRDQVYQPTEEEIRSYIDPYENVICKECHEGGDDGLMLLCDLCDSSAHTYCVGLGRQVP 449

Query: 847  EGNWYCKGCRISEPGSSNVLVQDPSLGTSSNSIPTYLTSQRMSVNDLDPTPQAVSALDPS 1026
            EGNWYC  CR    GS++   QDP        +P    S     N   P       LDP+
Sbjct: 450  EGNWYCDDCRPVALGSTSSQAQDP--------LPDQWNSSNNIFNRPSPILNLDEGLDPN 501

Query: 1027 LFRENEI--------LPSPRSIVGDDVHLVSPSGI-GVSTLSGRRRIHRQIRSMLSN-NR 1176
            L     +        L SPR + GD +H+ SP  + G STLSGRR +HR IR++LSN N 
Sbjct: 502  LESAPRLTIPQVSGSLSSPRFLTGD-IHVASPVSVAGASTLSGRRHLHRHIRTLLSNRNP 560

Query: 1177 VSHTTEVPRRIDDNIESEIVADSEDEQ--------LEKTTTQLAGPSASNGFHSDGFEVW 1332
             ++   V  RID    + + +D  + Q        L+   TQ  G S       +   + 
Sbjct: 561  SANMNPVANRIDVISAASLHSDFLNSQIDPVRETALQNLRTQEIGTSEQT---PNKERLQ 617

Query: 1333 AQDASPSSLLEIDH---TAAQSSRSSNFEGNGSASQQS------------NSVFGFQQLQ 1467
            A D   SS    D    T  QS R +  +   + + +             NS+ GF+Q  
Sbjct: 618  ANDHPSSSFQNRDSYYLTPNQSRRQTVQDPTITTADRPVNLTLWPDLMGINSIPGFEQSH 677

Query: 1468 HHRSSLFSWPDDCEFPRQRRSSSSHFQVENPLE 1566
              RS   + PD      Q R  S  + V+  L+
Sbjct: 678  QFRSRSSTEPDGTLSSYQVREQSQFYDVKEQLQ 710


>ref|XP_002330183.1| predicted protein [Populus trichocarpa] gi|222871639|gb|EEF08770.1|
            predicted protein [Populus trichocarpa]
          Length = 735

 Score =  340 bits (873), Expect = 6e-91
 Identities = 191/383 (49%), Positives = 245/383 (63%), Gaps = 14/383 (3%)
 Frame = +1

Query: 157  DDDFDLDYKAVRERNRTKSVI---KDWVSDDSE-----PSDVEYTLSDEEKELLREANKF 312
            D DF  D   VRE+++  S +   K  V+ DS+      SD +YT+S+EE+EL+REAN+F
Sbjct: 139  DGDFLADSSIVREKSKKHSGVRKRKFAVNSDSDFLSNGSSDYDYTISEEERELVREANQF 198

Query: 313  LGISTTCSRDSSLNGKLHKDGASKCLKPTPVERKGKQKVHELHIDTGKQVCGICFSEERK 492
              + T  S  SS  GK  ++    C +  P+ RKGK+KV E+  + G+QVCGIC SEE K
Sbjct: 199  GELKT--SLRSSSAGKRFQENGDLCEQTKPLGRKGKEKVDEVKSELGRQVCGICLSEEDK 256

Query: 493  GIVRGTLNCCSHYFCYACIMEWSKIESRCPLCKQRFVTISMPERSKLGVELRSLVIPIPT 672
               RGTL+CCSHYFC+ CIMEWSK+ESRCPLCKQRF TI+   RS +GV+LR++VI +P 
Sbjct: 257  RRFRGTLDCCSHYFCFTCIMEWSKVESRCPLCKQRFRTITKNGRSIVGVDLRNMVIQVPK 316

Query: 673  RDQVYQPTEEEVMGYLDPYDGVVCIECQEGGDDSLMLLCDICDSPSHTYCVGLGQEVPEG 852
            RDQVYQPTEEE+  Y+DPY+ V+C EC EGGDD LMLLCD+CDS +HTYCVGLG++VPEG
Sbjct: 317  RDQVYQPTEEEIRSYIDPYENVICKECHEGGDDGLMLLCDLCDSSAHTYCVGLGRQVPEG 376

Query: 853  NWYCKGCRISEPGSSNVLVQDPSLGTSSNSIPTYLTSQRMSVN---DLDPTPQAVSALD- 1020
            NWYC  CR    GSS+   QD SL    N          + +N    LDP  ++   L  
Sbjct: 377  NWYCDDCRPVALGSSSSQTQD-SLPDQWNISSNIFNRPSLMLNLEEGLDPNLESSPRLTV 435

Query: 1021 PSLFRENEILPSPRSIVGDDVHLVSP-SGIGVSTLSGRRRIHRQIRSMLSN-NRVSHTTE 1194
            P  F     L SPR   GD+ H+ SP SG G STLSGRR IHR IR +LSN N  ++   
Sbjct: 436  PQAFGS---LSSPRFPTGDN-HVASPVSGAGASTLSGRRHIHRNIRILLSNMNPSTNMNP 491

Query: 1195 VPRRIDDNIESEIVADSEDEQLE 1263
            +  RID    + +  D  + Q++
Sbjct: 492  MANRIDVISAASLRGDLSNSQID 514


>ref|XP_002278421.1| PREDICTED: uncharacterized protein LOC100240780 [Vitis vinifera]
          Length = 733

 Score =  339 bits (869), Expect = 2e-90
 Identities = 198/434 (45%), Positives = 258/434 (59%), Gaps = 17/434 (3%)
 Frame = +1

Query: 148  VSSDDDFDLDYKAVRERNRTKSVIKDWVSDDSE-----PSDVEYTLSDEEKELLREANKF 312
            V +D DF  +   VRER   K   +   + DSE      SD E+T+S+EE+E +REA++F
Sbjct: 153  VDNDGDFIDERPVVRERKSHKRKRRLAPASDSEFVSSGSSDFEFTISEEEREQVREADEF 212

Query: 313  LGISTTCSRDSSLNGKLHKDGASKCLKPTPVERKGKQKVHELHIDTGKQVCGICFSEERK 492
               ST   R +SL  K  ++      +  P  RKGK+KV ++  + GKQVCGIC SEE K
Sbjct: 213  CRRSTNNMRSASLPAKTIEE------ERKPPVRKGKEKVEDVKNEVGKQVCGICLSEEGK 266

Query: 493  GIVRGTLNCCSHYFCYACIMEWSKIESRCPLCKQRFVTISMPERSKLGVELRSLVIPIPT 672
              VRGTL+CCSHYFC+ CIMEWSK+ESRCPLCKQRF+TIS P R+  G++LR ++I +P 
Sbjct: 267  RRVRGTLDCCSHYFCFGCIMEWSKVESRCPLCKQRFMTISKPARANTGIDLRDVMIQVPE 326

Query: 673  RDQVYQPTEEEVMGYLDPYDGVVCIECQEGGDDSLMLLCDICDSPSHTYCVGLGQEVPEG 852
            RDQVY P+EEE+ GYLDPY+ V+C EC +GGDD LMLLCD+CDSP+HTYCVGLG+EVPEG
Sbjct: 327  RDQVYLPSEEEIRGYLDPYENVICTECHQGGDDGLMLLCDLCDSPAHTYCVGLGREVPEG 386

Query: 853  NWYCKGCRISEPGSSNVLVQDPSLGTSSNSIPTYLTSQRMSVNDLDPTPQAVSALDPSLF 1032
            NWYC+GCR S+       VQDP            L+  R + N L   P  V  +  SL 
Sbjct: 387  NWYCEGCRPSQ-------VQDP------------LSDHRTTQNTLSDRPSPVGNIGESLV 427

Query: 1033 RENEILPSP-RSIVGDDV-------HLVSP-SGIGVSTLSGRRRIHRQIRSMLSNNRVSH 1185
                +L +P    +G ++          SP S  G STLSGRR IHRQI  + SNNR+SH
Sbjct: 428  TSLSLLSTPFTQGIGINISPRYRNAEAASPVSASGASTLSGRRWIHRQIHQIRSNNRMSH 487

Query: 1186 TTEVPRRIDD---NIESEIVADSEDEQLEKTTTQLAGPSASNGFHSDGFEVWAQDASPSS 1356
                 R I +   N  S+ +    D+ L+ T +Q      +   HS   E   QD    S
Sbjct: 488  V--AVRNIGNSAPNSGSDFLNSQIDQGLD-TASQHTKALETGTSHSTFLEESLQDNRYPS 544

Query: 1357 LLEIDHTAAQSSRS 1398
            L  +D  + + S+S
Sbjct: 545  LQNMDLLSPRLSQS 558


>ref|XP_002512479.1| splicing factor, arginine/serine-rich 2,rnap interacting protein,
            putative [Ricinus communis] gi|223548440|gb|EEF49931.1|
            splicing factor, arginine/serine-rich 2,rnap interacting
            protein, putative [Ricinus communis]
          Length = 791

 Score =  311 bits (796), Expect = 5e-82
 Identities = 178/400 (44%), Positives = 249/400 (62%), Gaps = 9/400 (2%)
 Frame = +1

Query: 223  DWVSDDSEPSDVEYTLSDEEKELLREANKFLGISTTCSRDSSLNGKLHKDGASKCLKPTP 402
            D++S  S  SD EYT+S+EE+E +RE +K  G+ T+    SS+  +  ++    C +   
Sbjct: 232  DFMSSGS--SDYEYTISEEEREQVREGSKLFGVKTSLRSSSSI--RKTQESGDLCQQGKS 287

Query: 403  VERKGKQKVHELHIDTGKQVCGICFSEERKGIVRGTLNCCSHYFCYACIMEWSKIESRCP 582
            + RKGK+KV E+  + GKQ+CGIC SEE K  +RGTL+CCSHYFC+ CIMEWSK+ESRCP
Sbjct: 288  LARKGKEKVKEVKPELGKQMCGICLSEEDKRRLRGTLDCCSHYFCFTCIMEWSKVESRCP 347

Query: 583  LCKQRFVTISMPERSKLGVELRSLVIPIPTRDQVYQPTEEEVMGYLDPYDGVVCIECQEG 762
            LCKQRF TI+   R+ +GVE R++VI +P RDQVYQP+EEE+  ++DPY+ V+C EC EG
Sbjct: 348  LCKQRFKTITKNGRAAVGVEPRNVVIQVPKRDQVYQPSEEEIRSFIDPYENVICTECHEG 407

Query: 763  GDDSLMLLCDICDSPSHTYCVGLGQEVPEGNWYCKGCRISEPGSSNVLVQDPSLG-TSSN 939
            G+D LMLLCD+CDSP+HT+CVGLG++VPEGNWYC+ CR    GS++    DP     ++N
Sbjct: 408  GEDGLMLLCDLCDSPAHTFCVGLGRQVPEGNWYCEVCRPVALGSTSSQALDPMPDQRTTN 467

Query: 940  SIPTYLTSQRMSVNDLDPT--PQAVSALDPSLFRENEILPSPRSIVGDDVHLVSP-SGIG 1110
            +I +  +    SV   D T  P    A  P        L SPR   G DV   SP SG G
Sbjct: 468  NIFSRPSPDTNSVEGFDATSEPSPRLAFAPGF----GSLSSPRFPAG-DVQAASPVSGAG 522

Query: 1111 VSTLSGRRRIHRQIRSMLSNNRVSHTTEVPRRID-DNIESEIVADSEDE----QLEKTTT 1275
             STLS RR++HR I++++S +R+ +       I   N+  ++     D+     ++ + T
Sbjct: 523  GSTLSQRRQLHRHIQNLISMSRMHYMANRTDGISAANLHIDLSNPHNDQCRETIVQNSRT 582

Query: 1276 QLAGPSASNGFHSDGFEVWAQDASPSSLLEIDHTAAQSSR 1395
            Q  G S S  F  +  E  A D   SS+   D  +++SS+
Sbjct: 583  QEIGASQST-FLDERLE--ANDYPSSSMQNGDLFSSRSSQ 619


>ref|NP_187218.1| RING/U-box protein [Arabidopsis thaliana]
            gi|6714443|gb|AAF26130.1|AC011620_6 unknown protein
            [Arabidopsis thaliana] gi|21539513|gb|AAM53309.1| unknown
            protein [Arabidopsis thaliana] gi|27311925|gb|AAO00928.1|
            unknown protein [Arabidopsis thaliana]
            gi|332640753|gb|AEE74274.1| RING/U-box protein
            [Arabidopsis thaliana]
          Length = 883

 Score =  306 bits (784), Expect = 1e-80
 Identities = 172/359 (47%), Positives = 224/359 (62%), Gaps = 18/359 (5%)
 Frame = +1

Query: 157  DDDFDLDYKAVRERNRTKS----------VIKDWVSDDSEPSDVEYTLSDEEKELLREAN 306
            DDDF  D    R++ +TKS          V  D     S  SD EYT+S+EE+E +REA 
Sbjct: 305  DDDFVDDCLPARKKAKTKSSRPRPRRRCTVPSDSDVASSGESDYEYTISEEEREQIREAG 364

Query: 307  KFLGISTTCS---RDSSLNGKLHKDGASKCLKPTPVERKGKQKVHELHIDTGKQVCGICF 477
              L  S   +   R +++N  L +      L+ +PV +KG++KV  +  D  K VCGIC 
Sbjct: 365  SLLKSSVNHASSIRQTTVNKDLPQ------LRKSPV-KKGEKKVELVKRDVIKNVCGICL 417

Query: 478  SEERKGIVRGTLNCCSHYFCYACIMEWSKIESRCPLCKQRFVTISMPERSKLGVELRSLV 657
            SEE    ++GTL+CCSHYFC+ CIMEWSK+ESRCPLCKQRF TIS P RS  GV+LR +V
Sbjct: 418  SEEDMRRLKGTLDCCSHYFCFTCIMEWSKVESRCPLCKQRFRTISKPARSTPGVDLREVV 477

Query: 658  IPIPTRDQVYQPTEEEVMGYLDPYDGVVCIECQEGGDDSLMLLCDICDSPSHTYCVGLGQ 837
            IP+P RDQVYQPTEEE+  YLDPY+ ++C EC +G DD LMLLCD+CDS +HTYCVGLG+
Sbjct: 478  IPVPERDQVYQPTEEELRSYLDPYENIICTECHQGDDDGLMLLCDLCDSSAHTYCVGLGR 537

Query: 838  EVPEGNWYCKGCRISEPGSSN-----VLVQDPSLGTSSNSIPTYLTSQRMSVNDLDPTPQ 1002
            EVPEGNWYC+GCR    GS++     +  Q    G  S   P  ++ Q   V+ +     
Sbjct: 538  EVPEGNWYCEGCRPVALGSASSQTHIISEQQRGSGFYSRPSPLVVSGQYQDVSLI----- 592

Query: 1003 AVSALDPSLFRENEILPSPRSIVGDDVHLVSPSGIGVSTLSGRRRIHRQIRSMLSNNRV 1179
             VS   P  F   E L SPR I   D    SPSG+G +TLS RR +HR I+++++ +R+
Sbjct: 593  -VSPRTP--FFNGENLFSPR-IPNGDAQGSSPSGLGATTLSRRRTLHRHIQNIINGDRL 647


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