BLASTX nr result
ID: Coptis21_contig00013100
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00013100
(1915 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002319493.1| predicted protein [Populus trichocarpa] gi|2... 350 6e-94
ref|XP_002330183.1| predicted protein [Populus trichocarpa] gi|2... 340 6e-91
ref|XP_002278421.1| PREDICTED: uncharacterized protein LOC100240... 339 2e-90
ref|XP_002512479.1| splicing factor, arginine/serine-rich 2,rnap... 311 5e-82
ref|NP_187218.1| RING/U-box protein [Arabidopsis thaliana] gi|67... 306 1e-80
>ref|XP_002319493.1| predicted protein [Populus trichocarpa] gi|222857869|gb|EEE95416.1|
predicted protein [Populus trichocarpa]
Length = 810
Score = 350 bits (899), Expect = 6e-94
Identities = 215/513 (41%), Positives = 285/513 (55%), Gaps = 43/513 (8%)
Frame = +1
Query: 157 DDDFDLDYKAVRERNRTKSVIK----------DWVSDDSEPSDVEYTLSDEEKELLREAN 306
D DF D RE+++ S ++ D+VS+ S SD EYTLS+EE+E +REA+
Sbjct: 213 DGDFLADSPVAREKSKKTSGVRKRKFSVNSDSDFVSNGS--SDYEYTLSEEEREQVREAS 270
Query: 307 KFLGISTTCSRDSSLNGKLHKDGASKCLKPTPVERKGKQKVHELHIDTGKQVCGICFSEE 486
+ G T R SS+ ++ ++G C + PV RKGK+KV E + GKQVCGIC SEE
Sbjct: 271 QLYGELKTSLRSSSVGKRIQENG-DLCQQTKPVGRKGKEKVKEEKSELGKQVCGICLSEE 329
Query: 487 RKGIVRGTLNCCSHYFCYACIMEWSKIESRCPLCKQRFVTISMPERSKLGVELRSLVIPI 666
K +RGTL+CCSHYFC+ CIMEWSK+ESRCPLCKQRF TI+ RS +GV+LR++VI +
Sbjct: 330 DKRRLRGTLDCCSHYFCFTCIMEWSKVESRCPLCKQRFSTIAKNGRSAMGVDLRNMVIEV 389
Query: 667 PTRDQVYQPTEEEVMGYLDPYDGVVCIECQEGGDDSLMLLCDICDSPSHTYCVGLGQEVP 846
P RDQVYQPTEEE+ Y+DPY+ V+C EC EGGDD LMLLCD+CDS +HTYCVGLG++VP
Sbjct: 390 PMRDQVYQPTEEEIRSYIDPYENVICKECHEGGDDGLMLLCDLCDSSAHTYCVGLGRQVP 449
Query: 847 EGNWYCKGCRISEPGSSNVLVQDPSLGTSSNSIPTYLTSQRMSVNDLDPTPQAVSALDPS 1026
EGNWYC CR GS++ QDP +P S N P LDP+
Sbjct: 450 EGNWYCDDCRPVALGSTSSQAQDP--------LPDQWNSSNNIFNRPSPILNLDEGLDPN 501
Query: 1027 LFRENEI--------LPSPRSIVGDDVHLVSPSGI-GVSTLSGRRRIHRQIRSMLSN-NR 1176
L + L SPR + GD +H+ SP + G STLSGRR +HR IR++LSN N
Sbjct: 502 LESAPRLTIPQVSGSLSSPRFLTGD-IHVASPVSVAGASTLSGRRHLHRHIRTLLSNRNP 560
Query: 1177 VSHTTEVPRRIDDNIESEIVADSEDEQ--------LEKTTTQLAGPSASNGFHSDGFEVW 1332
++ V RID + + +D + Q L+ TQ G S + +
Sbjct: 561 SANMNPVANRIDVISAASLHSDFLNSQIDPVRETALQNLRTQEIGTSEQT---PNKERLQ 617
Query: 1333 AQDASPSSLLEIDH---TAAQSSRSSNFEGNGSASQQS------------NSVFGFQQLQ 1467
A D SS D T QS R + + + + + NS+ GF+Q
Sbjct: 618 ANDHPSSSFQNRDSYYLTPNQSRRQTVQDPTITTADRPVNLTLWPDLMGINSIPGFEQSH 677
Query: 1468 HHRSSLFSWPDDCEFPRQRRSSSSHFQVENPLE 1566
RS + PD Q R S + V+ L+
Sbjct: 678 QFRSRSSTEPDGTLSSYQVREQSQFYDVKEQLQ 710
>ref|XP_002330183.1| predicted protein [Populus trichocarpa] gi|222871639|gb|EEF08770.1|
predicted protein [Populus trichocarpa]
Length = 735
Score = 340 bits (873), Expect = 6e-91
Identities = 191/383 (49%), Positives = 245/383 (63%), Gaps = 14/383 (3%)
Frame = +1
Query: 157 DDDFDLDYKAVRERNRTKSVI---KDWVSDDSE-----PSDVEYTLSDEEKELLREANKF 312
D DF D VRE+++ S + K V+ DS+ SD +YT+S+EE+EL+REAN+F
Sbjct: 139 DGDFLADSSIVREKSKKHSGVRKRKFAVNSDSDFLSNGSSDYDYTISEEERELVREANQF 198
Query: 313 LGISTTCSRDSSLNGKLHKDGASKCLKPTPVERKGKQKVHELHIDTGKQVCGICFSEERK 492
+ T S SS GK ++ C + P+ RKGK+KV E+ + G+QVCGIC SEE K
Sbjct: 199 GELKT--SLRSSSAGKRFQENGDLCEQTKPLGRKGKEKVDEVKSELGRQVCGICLSEEDK 256
Query: 493 GIVRGTLNCCSHYFCYACIMEWSKIESRCPLCKQRFVTISMPERSKLGVELRSLVIPIPT 672
RGTL+CCSHYFC+ CIMEWSK+ESRCPLCKQRF TI+ RS +GV+LR++VI +P
Sbjct: 257 RRFRGTLDCCSHYFCFTCIMEWSKVESRCPLCKQRFRTITKNGRSIVGVDLRNMVIQVPK 316
Query: 673 RDQVYQPTEEEVMGYLDPYDGVVCIECQEGGDDSLMLLCDICDSPSHTYCVGLGQEVPEG 852
RDQVYQPTEEE+ Y+DPY+ V+C EC EGGDD LMLLCD+CDS +HTYCVGLG++VPEG
Sbjct: 317 RDQVYQPTEEEIRSYIDPYENVICKECHEGGDDGLMLLCDLCDSSAHTYCVGLGRQVPEG 376
Query: 853 NWYCKGCRISEPGSSNVLVQDPSLGTSSNSIPTYLTSQRMSVN---DLDPTPQAVSALD- 1020
NWYC CR GSS+ QD SL N + +N LDP ++ L
Sbjct: 377 NWYCDDCRPVALGSSSSQTQD-SLPDQWNISSNIFNRPSLMLNLEEGLDPNLESSPRLTV 435
Query: 1021 PSLFRENEILPSPRSIVGDDVHLVSP-SGIGVSTLSGRRRIHRQIRSMLSN-NRVSHTTE 1194
P F L SPR GD+ H+ SP SG G STLSGRR IHR IR +LSN N ++
Sbjct: 436 PQAFGS---LSSPRFPTGDN-HVASPVSGAGASTLSGRRHIHRNIRILLSNMNPSTNMNP 491
Query: 1195 VPRRIDDNIESEIVADSEDEQLE 1263
+ RID + + D + Q++
Sbjct: 492 MANRIDVISAASLRGDLSNSQID 514
>ref|XP_002278421.1| PREDICTED: uncharacterized protein LOC100240780 [Vitis vinifera]
Length = 733
Score = 339 bits (869), Expect = 2e-90
Identities = 198/434 (45%), Positives = 258/434 (59%), Gaps = 17/434 (3%)
Frame = +1
Query: 148 VSSDDDFDLDYKAVRERNRTKSVIKDWVSDDSE-----PSDVEYTLSDEEKELLREANKF 312
V +D DF + VRER K + + DSE SD E+T+S+EE+E +REA++F
Sbjct: 153 VDNDGDFIDERPVVRERKSHKRKRRLAPASDSEFVSSGSSDFEFTISEEEREQVREADEF 212
Query: 313 LGISTTCSRDSSLNGKLHKDGASKCLKPTPVERKGKQKVHELHIDTGKQVCGICFSEERK 492
ST R +SL K ++ + P RKGK+KV ++ + GKQVCGIC SEE K
Sbjct: 213 CRRSTNNMRSASLPAKTIEE------ERKPPVRKGKEKVEDVKNEVGKQVCGICLSEEGK 266
Query: 493 GIVRGTLNCCSHYFCYACIMEWSKIESRCPLCKQRFVTISMPERSKLGVELRSLVIPIPT 672
VRGTL+CCSHYFC+ CIMEWSK+ESRCPLCKQRF+TIS P R+ G++LR ++I +P
Sbjct: 267 RRVRGTLDCCSHYFCFGCIMEWSKVESRCPLCKQRFMTISKPARANTGIDLRDVMIQVPE 326
Query: 673 RDQVYQPTEEEVMGYLDPYDGVVCIECQEGGDDSLMLLCDICDSPSHTYCVGLGQEVPEG 852
RDQVY P+EEE+ GYLDPY+ V+C EC +GGDD LMLLCD+CDSP+HTYCVGLG+EVPEG
Sbjct: 327 RDQVYLPSEEEIRGYLDPYENVICTECHQGGDDGLMLLCDLCDSPAHTYCVGLGREVPEG 386
Query: 853 NWYCKGCRISEPGSSNVLVQDPSLGTSSNSIPTYLTSQRMSVNDLDPTPQAVSALDPSLF 1032
NWYC+GCR S+ VQDP L+ R + N L P V + SL
Sbjct: 387 NWYCEGCRPSQ-------VQDP------------LSDHRTTQNTLSDRPSPVGNIGESLV 427
Query: 1033 RENEILPSP-RSIVGDDV-------HLVSP-SGIGVSTLSGRRRIHRQIRSMLSNNRVSH 1185
+L +P +G ++ SP S G STLSGRR IHRQI + SNNR+SH
Sbjct: 428 TSLSLLSTPFTQGIGINISPRYRNAEAASPVSASGASTLSGRRWIHRQIHQIRSNNRMSH 487
Query: 1186 TTEVPRRIDD---NIESEIVADSEDEQLEKTTTQLAGPSASNGFHSDGFEVWAQDASPSS 1356
R I + N S+ + D+ L+ T +Q + HS E QD S
Sbjct: 488 V--AVRNIGNSAPNSGSDFLNSQIDQGLD-TASQHTKALETGTSHSTFLEESLQDNRYPS 544
Query: 1357 LLEIDHTAAQSSRS 1398
L +D + + S+S
Sbjct: 545 LQNMDLLSPRLSQS 558
>ref|XP_002512479.1| splicing factor, arginine/serine-rich 2,rnap interacting protein,
putative [Ricinus communis] gi|223548440|gb|EEF49931.1|
splicing factor, arginine/serine-rich 2,rnap interacting
protein, putative [Ricinus communis]
Length = 791
Score = 311 bits (796), Expect = 5e-82
Identities = 178/400 (44%), Positives = 249/400 (62%), Gaps = 9/400 (2%)
Frame = +1
Query: 223 DWVSDDSEPSDVEYTLSDEEKELLREANKFLGISTTCSRDSSLNGKLHKDGASKCLKPTP 402
D++S S SD EYT+S+EE+E +RE +K G+ T+ SS+ + ++ C +
Sbjct: 232 DFMSSGS--SDYEYTISEEEREQVREGSKLFGVKTSLRSSSSI--RKTQESGDLCQQGKS 287
Query: 403 VERKGKQKVHELHIDTGKQVCGICFSEERKGIVRGTLNCCSHYFCYACIMEWSKIESRCP 582
+ RKGK+KV E+ + GKQ+CGIC SEE K +RGTL+CCSHYFC+ CIMEWSK+ESRCP
Sbjct: 288 LARKGKEKVKEVKPELGKQMCGICLSEEDKRRLRGTLDCCSHYFCFTCIMEWSKVESRCP 347
Query: 583 LCKQRFVTISMPERSKLGVELRSLVIPIPTRDQVYQPTEEEVMGYLDPYDGVVCIECQEG 762
LCKQRF TI+ R+ +GVE R++VI +P RDQVYQP+EEE+ ++DPY+ V+C EC EG
Sbjct: 348 LCKQRFKTITKNGRAAVGVEPRNVVIQVPKRDQVYQPSEEEIRSFIDPYENVICTECHEG 407
Query: 763 GDDSLMLLCDICDSPSHTYCVGLGQEVPEGNWYCKGCRISEPGSSNVLVQDPSLG-TSSN 939
G+D LMLLCD+CDSP+HT+CVGLG++VPEGNWYC+ CR GS++ DP ++N
Sbjct: 408 GEDGLMLLCDLCDSPAHTFCVGLGRQVPEGNWYCEVCRPVALGSTSSQALDPMPDQRTTN 467
Query: 940 SIPTYLTSQRMSVNDLDPT--PQAVSALDPSLFRENEILPSPRSIVGDDVHLVSP-SGIG 1110
+I + + SV D T P A P L SPR G DV SP SG G
Sbjct: 468 NIFSRPSPDTNSVEGFDATSEPSPRLAFAPGF----GSLSSPRFPAG-DVQAASPVSGAG 522
Query: 1111 VSTLSGRRRIHRQIRSMLSNNRVSHTTEVPRRID-DNIESEIVADSEDE----QLEKTTT 1275
STLS RR++HR I++++S +R+ + I N+ ++ D+ ++ + T
Sbjct: 523 GSTLSQRRQLHRHIQNLISMSRMHYMANRTDGISAANLHIDLSNPHNDQCRETIVQNSRT 582
Query: 1276 QLAGPSASNGFHSDGFEVWAQDASPSSLLEIDHTAAQSSR 1395
Q G S S F + E A D SS+ D +++SS+
Sbjct: 583 QEIGASQST-FLDERLE--ANDYPSSSMQNGDLFSSRSSQ 619
>ref|NP_187218.1| RING/U-box protein [Arabidopsis thaliana]
gi|6714443|gb|AAF26130.1|AC011620_6 unknown protein
[Arabidopsis thaliana] gi|21539513|gb|AAM53309.1| unknown
protein [Arabidopsis thaliana] gi|27311925|gb|AAO00928.1|
unknown protein [Arabidopsis thaliana]
gi|332640753|gb|AEE74274.1| RING/U-box protein
[Arabidopsis thaliana]
Length = 883
Score = 306 bits (784), Expect = 1e-80
Identities = 172/359 (47%), Positives = 224/359 (62%), Gaps = 18/359 (5%)
Frame = +1
Query: 157 DDDFDLDYKAVRERNRTKS----------VIKDWVSDDSEPSDVEYTLSDEEKELLREAN 306
DDDF D R++ +TKS V D S SD EYT+S+EE+E +REA
Sbjct: 305 DDDFVDDCLPARKKAKTKSSRPRPRRRCTVPSDSDVASSGESDYEYTISEEEREQIREAG 364
Query: 307 KFLGISTTCS---RDSSLNGKLHKDGASKCLKPTPVERKGKQKVHELHIDTGKQVCGICF 477
L S + R +++N L + L+ +PV +KG++KV + D K VCGIC
Sbjct: 365 SLLKSSVNHASSIRQTTVNKDLPQ------LRKSPV-KKGEKKVELVKRDVIKNVCGICL 417
Query: 478 SEERKGIVRGTLNCCSHYFCYACIMEWSKIESRCPLCKQRFVTISMPERSKLGVELRSLV 657
SEE ++GTL+CCSHYFC+ CIMEWSK+ESRCPLCKQRF TIS P RS GV+LR +V
Sbjct: 418 SEEDMRRLKGTLDCCSHYFCFTCIMEWSKVESRCPLCKQRFRTISKPARSTPGVDLREVV 477
Query: 658 IPIPTRDQVYQPTEEEVMGYLDPYDGVVCIECQEGGDDSLMLLCDICDSPSHTYCVGLGQ 837
IP+P RDQVYQPTEEE+ YLDPY+ ++C EC +G DD LMLLCD+CDS +HTYCVGLG+
Sbjct: 478 IPVPERDQVYQPTEEELRSYLDPYENIICTECHQGDDDGLMLLCDLCDSSAHTYCVGLGR 537
Query: 838 EVPEGNWYCKGCRISEPGSSN-----VLVQDPSLGTSSNSIPTYLTSQRMSVNDLDPTPQ 1002
EVPEGNWYC+GCR GS++ + Q G S P ++ Q V+ +
Sbjct: 538 EVPEGNWYCEGCRPVALGSASSQTHIISEQQRGSGFYSRPSPLVVSGQYQDVSLI----- 592
Query: 1003 AVSALDPSLFRENEILPSPRSIVGDDVHLVSPSGIGVSTLSGRRRIHRQIRSMLSNNRV 1179
VS P F E L SPR I D SPSG+G +TLS RR +HR I+++++ +R+
Sbjct: 593 -VSPRTP--FFNGENLFSPR-IPNGDAQGSSPSGLGATTLSRRRTLHRHIQNIINGDRL 647