BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013096
         (1112 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [V...   566   e-159
ref|XP_002520343.1| replication factor C / DNA polymerase III ga...   550   e-154
ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-li...   548   e-154
ref|XP_002302226.1| predicted protein [Populus trichocarpa] gi|2...   548   e-154
ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-li...   543   e-152

>ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [Vitis vinifera]
            gi|302141794|emb|CBI18997.3| unnamed protein product
            [Vitis vinifera]
          Length = 360

 Score =  566 bits (1459), Expect = e-159
 Identities = 288/329 (87%), Positives = 303/329 (92%), Gaps = 2/329 (0%)
 Frame = -2

Query: 1087 KGKDIIM--QPSDTATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPGT 914
            KGK +++   P   ATPWVEKYRPQSLADVAAHRDIVDTIDRLTSEN+LPHLLLYGPPGT
Sbjct: 22   KGKSVVVGGPPDRKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGT 81

Query: 913  GKTSTILAVARKLYGASYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLV 734
            GKTSTILAVARKLYG  +HNMILELNASDDRGIDVVRQQIQDFASTQSFSFG K+SVKLV
Sbjct: 82   GKTSTILAVARKLYGEQFHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSVKLV 141

Query: 733  LLDEADAMTKDAQFALRRVIEKYTKNTRFSLICNHVNKIIPALQSRCTRFRFAPLDATHV 554
            LLDEADAMTKDAQFALRRVIEKYTKNTRF+LICNHVNKIIPALQSRCTRFRFAPLDA HV
Sbjct: 142  LLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHV 201

Query: 553  TERLKHVIEAEGLNVDESGLTALVRLSSGDMRKALNILQSTHMASPHITEEAVYLCTGNP 374
            TERLKHVI AE L+V ESGL ALVRLSSGDMRKALNILQSTHMAS  ITEEAVYLCTGNP
Sbjct: 202  TERLKHVINAEKLDVSESGLAALVRLSSGDMRKALNILQSTHMASQQITEEAVYLCTGNP 261

Query: 373  MPKDIEQISFWLLNESFTTGLRNISEMKMIKGLALVDIVREVTMFIFKIKMPSDVRVNLI 194
            +PKDIEQIS+WLLNESF      ISE+KM KGLALVD+VREVTMF+FKIKMPSDVRV LI
Sbjct: 262  LPKDIEQISYWLLNESFAASFDRISEVKMRKGLALVDVVREVTMFVFKIKMPSDVRVQLI 321

Query: 193  NDLADIEYRLTFGSNDKLQLGSLIASFTK 107
            NDLADIEYRL+FG NDKLQLGSLIASFT+
Sbjct: 322  NDLADIEYRLSFGCNDKLQLGSLIASFTR 350


>ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
            [Ricinus communis] gi|223540562|gb|EEF42129.1|
            replication factor C / DNA polymerase III gamma-tau
            subunit, putative [Ricinus communis]
          Length = 360

 Score =  550 bits (1417), Expect = e-154
 Identities = 277/326 (84%), Positives = 300/326 (92%)
 Frame = -2

Query: 1087 KGKDIIMQPSDTATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPGTGK 908
            KGK++ +     ATPWVEKYRPQSLADVAAHRDIVDTIDRLT+EN+LPHLLLYGPPGTGK
Sbjct: 26   KGKNVFVDTK--ATPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGK 83

Query: 907  TSTILAVARKLYGASYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLL 728
            TSTILAVARKLYG  YHNMILELNASDDRGIDVVRQQIQDFASTQSFSF  K++VKLVLL
Sbjct: 84   TSTILAVARKLYGVQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFDAKSAVKLVLL 143

Query: 727  DEADAMTKDAQFALRRVIEKYTKNTRFSLICNHVNKIIPALQSRCTRFRFAPLDATHVTE 548
            DEADAMTKDAQFALRRVIEKYTKNTRF+LICNHVNKIIPALQSRCTRFRFAPLD  HVT+
Sbjct: 144  DEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPIHVTD 203

Query: 547  RLKHVIEAEGLNVDESGLTALVRLSSGDMRKALNILQSTHMASPHITEEAVYLCTGNPMP 368
            RLKHVIEAEGL+V E GL A+VRLS+GDMRKALNILQSTHMAS  ITEEAV+LCTGNP+P
Sbjct: 204  RLKHVIEAEGLDVPEPGLAAVVRLSNGDMRKALNILQSTHMASQQITEEAVHLCTGNPLP 263

Query: 367  KDIEQISFWLLNESFTTGLRNISEMKMIKGLALVDIVREVTMFIFKIKMPSDVRVNLIND 188
            KDI+QIS+WLLNESF    + ISE+K  KGLALVDIVREVTMF+FKIKMPSDVRV LIND
Sbjct: 264  KDIQQISYWLLNESFAESFKRISEIKTKKGLALVDIVREVTMFVFKIKMPSDVRVQLIND 323

Query: 187  LADIEYRLTFGSNDKLQLGSLIASFT 110
            +ADIEYRL+FG +DKLQLGSL+ASFT
Sbjct: 324  MADIEYRLSFGCSDKLQLGSLVASFT 349


>ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
            gi|449499057|ref|XP_004160708.1| PREDICTED: replication
            factor C subunit 5-like [Cucumis sativus]
          Length = 363

 Score =  548 bits (1413), Expect = e-154
 Identities = 278/329 (84%), Positives = 300/329 (91%), Gaps = 3/329 (0%)
 Frame = -2

Query: 1087 KGKDIIMQ---PSDTATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPG 917
            KGK++      P   A PWVEK+RP+SLADVAAHRDIVDTID+LTSEN+LPHLLLYGPPG
Sbjct: 24   KGKNVASPAAAPEGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPG 83

Query: 916  TGKTSTILAVARKLYGASYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKL 737
            TGKTSTILAVARKLYG +YHNMILELNASDDRGIDVVRQQIQDFASTQSFSFG KASVKL
Sbjct: 84   TGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKL 143

Query: 736  VLLDEADAMTKDAQFALRRVIEKYTKNTRFSLICNHVNKIIPALQSRCTRFRFAPLDATH 557
            VLLDEADAMTKDAQFALRRVIEKYTKNTRF+LICNHVNKIIPALQSRCTRFRFAPLD  H
Sbjct: 144  VLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFH 203

Query: 556  VTERLKHVIEAEGLNVDESGLTALVRLSSGDMRKALNILQSTHMASPHITEEAVYLCTGN 377
            VTERL++VIEAE L+V E GL ALVRL +GDMRKALNILQSTHMAS HITEEAVYLCTGN
Sbjct: 204  VTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGN 263

Query: 376  PMPKDIEQISFWLLNESFTTGLRNISEMKMIKGLALVDIVREVTMFIFKIKMPSDVRVNL 197
            PMPKDIEQISFWLLNE F+   + ISE+K  KGLALVDIVREVT+F+FKI+MPS++RV L
Sbjct: 264  PMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKIEMPSNIRVQL 323

Query: 196  INDLADIEYRLTFGSNDKLQLGSLIASFT 110
            INDLADIEYR+TFG NDKLQLGSLI+SFT
Sbjct: 324  INDLADIEYRMTFGCNDKLQLGSLISSFT 352


>ref|XP_002302226.1| predicted protein [Populus trichocarpa] gi|222843952|gb|EEE81499.1|
            predicted protein [Populus trichocarpa]
          Length = 363

 Score =  548 bits (1413), Expect = e-154
 Identities = 279/330 (84%), Positives = 299/330 (90%), Gaps = 3/330 (0%)
 Frame = -2

Query: 1087 KGKDIIMQ---PSDTATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPG 917
            KGK +++    P   ATPWVEKYRPQSLADVAAHRDI+DTIDRLTSEN+LPHLLLYGPPG
Sbjct: 24   KGKKVVVPATPPGGKATPWVEKYRPQSLADVAAHRDIIDTIDRLTSENRLPHLLLYGPPG 83

Query: 916  TGKTSTILAVARKLYGASYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVKL 737
            TGKTSTILAVARKLYGA YHNMILELNASDDRGIDVVR+QIQDFASTQSFSFG KASVKL
Sbjct: 84   TGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRKQIQDFASTQSFSFGAKASVKL 143

Query: 736  VLLDEADAMTKDAQFALRRVIEKYTKNTRFSLICNHVNKIIPALQSRCTRFRFAPLDATH 557
            VLLDEADAMTKDAQFALRRVIEKYTKNTRF+LICNHVNKIIPALQSRCTRFRFAPLD  H
Sbjct: 144  VLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPMH 203

Query: 556  VTERLKHVIEAEGLNVDESGLTALVRLSSGDMRKALNILQSTHMASPHITEEAVYLCTGN 377
            V ERLKHVIEAEGL+V ESGL AL  LS+GDMRKALNILQSTHMAS  ITEE VYLCTGN
Sbjct: 204  VGERLKHVIEAEGLDVPESGLEALKCLSNGDMRKALNILQSTHMASQQITEETVYLCTGN 263

Query: 376  PMPKDIEQISFWLLNESFTTGLRNISEMKMIKGLALVDIVREVTMFIFKIKMPSDVRVNL 197
            P+P+D++QI+ WLLNESF    + ISE+K  KGLALVDIVREVTMF+FKIKM SD+RV L
Sbjct: 264  PLPQDVQQITHWLLNESFAESYKRISEIKTRKGLALVDIVREVTMFVFKIKMQSDIRVPL 323

Query: 196  INDLADIEYRLTFGSNDKLQLGSLIASFTK 107
            INDLADIEYRL+FG NDKLQLGSLIASFT+
Sbjct: 324  INDLADIEYRLSFGCNDKLQLGSLIASFTR 353


>ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
          Length = 361

 Score =  543 bits (1399), Expect = e-152
 Identities = 275/331 (83%), Positives = 298/331 (90%), Gaps = 4/331 (1%)
 Frame = -2

Query: 1087 KGKDIIMQPSDTAT----PWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPP 920
            KGK ++   +  A     PWVEKYRPQSL DVAAHRDIVDTIDRLT+EN+LPHLLLYGPP
Sbjct: 21   KGKSVVFAGNPPAAGKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPP 80

Query: 919  GTGKTSTILAVARKLYGASYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKASVK 740
            GTGKTSTILAVARKLYG+ Y NMILELNASDDRGIDVVRQQIQDFASTQS SFGVK+SVK
Sbjct: 81   GTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVK 140

Query: 739  LVLLDEADAMTKDAQFALRRVIEKYTKNTRFSLICNHVNKIIPALQSRCTRFRFAPLDAT 560
            LVLLDEADAMTKDAQFALRRVIEKYTK+TRF+LICNHVNKIIPALQSRCTRFRFAPLDA 
Sbjct: 141  LVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAV 200

Query: 559  HVTERLKHVIEAEGLNVDESGLTALVRLSSGDMRKALNILQSTHMASPHITEEAVYLCTG 380
            HVTERLKHVI+AEGL+V++SGL A VRLS+GDMRKALNILQSTHMAS  ITEEAVYLCTG
Sbjct: 201  HVTERLKHVIKAEGLDVEDSGLAAFVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTG 260

Query: 379  NPMPKDIEQISFWLLNESFTTGLRNISEMKMIKGLALVDIVREVTMFIFKIKMPSDVRVN 200
            NP+PKDIE IS+WLLNE F    + I EMK  KGLAL+DIVREVTMF+FKIKMPS VRV 
Sbjct: 261  NPLPKDIELISYWLLNEQFADSFKRIDEMKTRKGLALIDIVREVTMFVFKIKMPSAVRVQ 320

Query: 199  LINDLADIEYRLTFGSNDKLQLGSLIASFTK 107
            L+NDLADIEYRL+FG NDKLQLGS+IASFT+
Sbjct: 321  LMNDLADIEYRLSFGCNDKLQLGSVIASFTR 351