BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013068
         (467 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522208.1| hypothetical protein RCOM_1732210 [Ricinus c...    63   2e-08
ref|XP_004146631.1| PREDICTED: putative ribonuclease H protein A...    59   3e-07
gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Ze...    59   3e-07
gb|AFW65836.1| hypothetical protein ZEAMMB73_825751 [Zea mays]         59   5e-07
ref|XP_002869889.1| At4g21420 [Arabidopsis lyrata subsp. lyrata]...    58   7e-07

>ref|XP_002522208.1| hypothetical protein RCOM_1732210 [Ricinus communis]
           gi|223538579|gb|EEF40183.1| hypothetical protein
           RCOM_1732210 [Ricinus communis]
          Length = 95

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 33/86 (38%), Positives = 47/86 (54%)
 Frame = +1

Query: 208 PQLLECYWFLPPMGIMKISTDGASRGNPGIAGWGVVARNHLGVVCAAGIGGLGVETSYMA 387
           P++    W  PP   +K++++GA+RG PG  G G + RN  GVV    I  L    +++A
Sbjct: 2   PKIFTIKWHPPPPSWIKLNSNGATRGAPGTTGVGGLFRNCRGVVKGCFIVPLSTTYAFVA 61

Query: 388 ECHDIIEGTRRAVEQGWKDIWIESDS 465
           E    I G  +A   GW  IW+ESDS
Sbjct: 62  EIKAAIYGIDKAYNFGWNKIWLESDS 87


>ref|XP_004146631.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus] gi|449488498|ref|XP_004158057.1| PREDICTED:
           putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 205

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
 Frame = +1

Query: 196 LSRAPQLLECYWFLPPMGIMKISTDGASRGN--PGIAGWGVVARNHLGVVCAAGIGGLGV 369
           L + P  +   W  P  G  K++ DG+S+G   PG+A  G V R+H           +G 
Sbjct: 25  LHKRPIPIPVAWTRPEFGWTKLNFDGSSKGEIGPGVASIGGVLRDHKAQFLLGYAESIGR 84

Query: 370 ETSYMAECHDIIEGTRRAVEQGWKDIWIESDS 465
             S MAE   + +G    +E GWKD+W+E D+
Sbjct: 85  AYSSMAELKALTKGLELVLENGWKDVWVEGDA 116


>gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Zea mays]
          Length = 472

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
 Frame = +1

Query: 157 DTILLLKLNLEP----RLSRAPQLLECYWFLPPMGIMKISTDGASRGNPGIAGWGVVARN 324
           +T+    +N+E     + +RAP +    W  PP G  KI+ DG+ R   G+  WG + R 
Sbjct: 280 NTVAYHLMNMEKLQIGKSARAPPM-NLKWQPPPAGFYKINCDGSYRAKSGLGSWGCIIRG 338

Query: 325 HLGVVCAAGIGGL-GVETSYMAECHDIIEGTRRAVEQGWKDIWIESDS 465
           H G   AAG G L G+ ++  AE    ++G   AV  G +++ IE+D+
Sbjct: 339 HDGGFLAAGAGALTGISSALHAESVACMKGLELAVFLGMQNVMIETDA 386


>gb|AFW65836.1| hypothetical protein ZEAMMB73_825751 [Zea mays]
          Length = 279

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
 Frame = +1

Query: 157 DTILLLKLNLEP----RLSRAPQLLECYWFLPPMGIMKISTDGASRGNPGIAGWGVVARN 324
           +T+    +N+E     + +RAP +    W  PP G  KI+ DG+     G+ GWG + R 
Sbjct: 87  NTVAYHLMNMEKLQIGKSARAPPM-NLKWQPPPAGFYKINCDGSYLAKSGLGGWGCIIRG 145

Query: 325 HLGVVCAAGIGGL-GVETSYMAECHDIIEGTRRAVEQGWKDIWIESDS 465
           H G   AAG G L G+ ++  AE    ++G   AV  G +++ IE+D+
Sbjct: 146 HDGSFLAAGAGTLTGISSTLHAESVACMKGLELAVFLGMQNVMIETDA 193


>ref|XP_002869889.1| At4g21420 [Arabidopsis lyrata subsp. lyrata]
           gi|297315725|gb|EFH46148.1| At4g21420 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 201

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 36/110 (32%), Positives = 55/110 (50%)
 Frame = +1

Query: 136 KGTMSSSDTILLLKLNLEPRLSRAPQLLECYWFLPPMGIMKISTDGASRGNPGIAGWGVV 315
           +G++ S  T+LL++       +   Q ++  W  P +G +K++ DG SRG  G A  G +
Sbjct: 11  QGSLQSRATLLLIR-------NYHKQPVKVVWKKPQIGWIKLNFDG-SRGREGQASIGGI 62

Query: 316 ARNHLGVVCAAGIGGLGVETSYMAECHDIIEGTRRAVEQGWKDIWIESDS 465
            RNH           +G  TS MAE   +  G    +E GW DIW+E D+
Sbjct: 63  FRNHKAEFLLGYSESIGEATSTMAEFAALKRGLELVLENGWTDIWLEGDA 112