BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013028
         (1490 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_174349.1| pentatricopeptide repeat-containing protein [Ar...    62   3e-07
ref|NP_001185117.1| pentatricopeptide repeat-containing protein ...    62   3e-07
ref|XP_002337688.1| predicted protein [Populus trichocarpa] gi|2...    62   3e-07
ref|XP_002890881.1| EMB2279 [Arabidopsis lyrata subsp. lyrata] g...    61   9e-07
emb|CAN72260.1| hypothetical protein VITISV_035448 [Vitis vinifera]    57   1e-05

>ref|NP_174349.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75200328|sp|Q9SA76.1|PPR64_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At1g30610, chloroplastic; AltName: Full=Protein EMBRYO
            DEFECTIVE 2279; Flags: Precursor
            gi|4587517|gb|AAD25748.1|AC007060_6 T5I8.6 [Arabidopsis
            thaliana] gi|332193128|gb|AEE31249.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 1006

 Score = 62.4 bits (150), Expect = 3e-07
 Identities = 89/346 (25%), Positives = 144/346 (41%), Gaps = 34/346 (9%)
 Frame = -1

Query: 1448 MAVTLSTNSSTNPSVLQ----SFWRVPL------NPVSKIALSRKNVKENRVFCAVVANG 1299
            MAVT+STN+  N S+L     SFWR PL      N    + L+ + +    +FC  +   
Sbjct: 1    MAVTISTNAFVNASLLDESRNSFWR-PLFHQPYYNCRRVVRLNSRKLNSKVMFCLNLNTK 59

Query: 1298 LADSGKFIEKQFEFKPTFDDYLKAMESVKTGRETKPVGKDVRRVSE----------AFEE 1149
                 K  +K FEFKP+FD YL+ MESVKT R+ K    D  +V E           +E 
Sbjct: 60   EVGLQKPGDKGFEFKPSFDQYLQIMESVKTARKKKKF--DRLKVEEDDGGGGNGDSVYEV 117

Query: 1148 GKERVESGS-EGYSHRMGNRKREGLYEKSRTRIRPMGVDNSEVSFREGNNGVTRDVEEGF 972
               +++SG  +  + R    ++E + +K   R+      N E+     N+ V  D++   
Sbjct: 118  KDMKIKSGELKDETFRKRYSRQEIVSDKRNERVFKR---NGEIE----NHRVATDLKWSK 170

Query: 971  SRKGGRGSIEDSSGRNKIGFRKRNNGVLKESNKFGWRRGPSEDDGAGSFRGSGRHKLEFG 792
            S +         SG + +     +    K  +K  + R  S D   G  RGS   +L+  
Sbjct: 171  SGESSVALKLSKSGESSVTV-PEDESFRKRYSKQEYHR--SSDTSRGIERGSRGDELDL- 226

Query: 791  EANMDLSRERGLQEEKDEGSLTKPNR-----KWTNGVTS--------RFDAKHLTRKDHR 651
                 +  ER +Q    +   +K        KW+N   S         F  ++  ++ HR
Sbjct: 227  -----VVEERRVQRIAKDARWSKSRESSVAVKWSNSGESSVTMPKDESFRRRYSKQEHHR 281

Query: 650  FSGNYRNMNVVKRPGDDEDLHEVGLDQKRNRINLQKKKLKSNETRV 513
             S   R    + R    ++L  V  +++  RI    +  KS+E+ V
Sbjct: 282  SSDTSRG---IARGSKGDELELVVEERRVQRIAKDVRWSKSDESLV 324


>ref|NP_001185117.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|332193129|gb|AEE31250.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 978

 Score = 62.4 bits (150), Expect = 3e-07
 Identities = 89/346 (25%), Positives = 144/346 (41%), Gaps = 34/346 (9%)
 Frame = -1

Query: 1448 MAVTLSTNSSTNPSVLQ----SFWRVPL------NPVSKIALSRKNVKENRVFCAVVANG 1299
            MAVT+STN+  N S+L     SFWR PL      N    + L+ + +    +FC  +   
Sbjct: 1    MAVTISTNAFVNASLLDESRNSFWR-PLFHQPYYNCRRVVRLNSRKLNSKVMFCLNLNTK 59

Query: 1298 LADSGKFIEKQFEFKPTFDDYLKAMESVKTGRETKPVGKDVRRVSE----------AFEE 1149
                 K  +K FEFKP+FD YL+ MESVKT R+ K    D  +V E           +E 
Sbjct: 60   EVGLQKPGDKGFEFKPSFDQYLQIMESVKTARKKKKF--DRLKVEEDDGGGGNGDSVYEV 117

Query: 1148 GKERVESGS-EGYSHRMGNRKREGLYEKSRTRIRPMGVDNSEVSFREGNNGVTRDVEEGF 972
               +++SG  +  + R    ++E + +K   R+      N E+     N+ V  D++   
Sbjct: 118  KDMKIKSGELKDETFRKRYSRQEIVSDKRNERVFKR---NGEIE----NHRVATDLKWSK 170

Query: 971  SRKGGRGSIEDSSGRNKIGFRKRNNGVLKESNKFGWRRGPSEDDGAGSFRGSGRHKLEFG 792
            S +         SG + +     +    K  +K  + R  S D   G  RGS   +L+  
Sbjct: 171  SGESSVALKLSKSGESSVTV-PEDESFRKRYSKQEYHR--SSDTSRGIERGSRGDELDL- 226

Query: 791  EANMDLSRERGLQEEKDEGSLTKPNR-----KWTNGVTS--------RFDAKHLTRKDHR 651
                 +  ER +Q    +   +K        KW+N   S         F  ++  ++ HR
Sbjct: 227  -----VVEERRVQRIAKDARWSKSRESSVAVKWSNSGESSVTMPKDESFRRRYSKQEHHR 281

Query: 650  FSGNYRNMNVVKRPGDDEDLHEVGLDQKRNRINLQKKKLKSNETRV 513
             S   R    + R    ++L  V  +++  RI    +  KS+E+ V
Sbjct: 282  SSDTSRG---IARGSKGDELELVVEERRVQRIAKDVRWSKSDESLV 324


>ref|XP_002337688.1| predicted protein [Populus trichocarpa] gi|222869559|gb|EEF06690.1|
            predicted protein [Populus trichocarpa]
          Length = 528

 Score = 62.4 bits (150), Expect = 3e-07
 Identities = 54/154 (35%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
 Frame = -1

Query: 1304 NGLADSGKFIEKQFEFKPTFDDYLKAMESVKTGRETKPVGKDVRRVSEAFEEGK-----E 1140
            N L  SG  IEK+FEFKP+F +YLKAMESVKTGRE   V K      +   EG      E
Sbjct: 18   NRLVGSGGVIEKEFEFKPSFGEYLKAMESVKTGREKNQVHKSNSSKLKDDLEGNDAPLLE 77

Query: 1139 RVESGSE--GYSHRMGNRKREGLYEKSRTRIRPMG---VDNSEVSFREGNNGVTRDVEEG 975
            R E   +  G+  R+   K     E      RP G   V N+E+ +R G       + E 
Sbjct: 78   RDERSVKLRGFKDRVKVSKVMESDEFGENANRPSGEEDVVNAELDYRRGR------IREF 131

Query: 974  FSRKGGRGSIEDSSGRNKIGFRKRNNGVLKESNK 873
                GG+ S   ++ R K G    N   L+   +
Sbjct: 132  NHNVGGKESHAHANVRRKRGGATSNERWLRNGTR 165


>ref|XP_002890881.1| EMB2279 [Arabidopsis lyrata subsp. lyrata]
            gi|297336723|gb|EFH67140.1| EMB2279 [Arabidopsis lyrata
            subsp. lyrata]
          Length = 913

 Score = 60.8 bits (146), Expect = 9e-07
 Identities = 65/206 (31%), Positives = 85/206 (41%), Gaps = 32/206 (15%)
 Frame = -1

Query: 1448 MAVTLSTNSSTNPSVLQS----FWRVPLNPVSK------IALSRKNVKENRVFCAVVAN- 1302
            MAVT+STN+  N S L      FW+ PL P         + L+ +  K   +FC  +   
Sbjct: 1    MAVTISTNTFVNASFLDESRNFFWK-PLFPQPSYNCRRVVRLNSRKSKTKVMFCLNLNTK 59

Query: 1301 --GLADSGKFIEKQFEFKPTFDDYLKAMESVKTGRETKPVGK--------DVRRVSEAFE 1152
              G+  SG   +K FEFKP+FD YL+ MESVKT R+ K   +         V        
Sbjct: 60   EVGMQTSG---DKGFEFKPSFDQYLQIMESVKTARKKKKFDRFKVEDDDGGVGNSDSVDS 116

Query: 1151 EGKERVESGSEGYSHRMGNRKREGLYEKSRTRIRPMGVDNSEVSFREGNNGVTRDVEEGF 972
            E K+ V S   G    +  +  E   E  R R     +    VS +    GV R  E G 
Sbjct: 117  EVKDGVSSRRLGLDKDVKIKSGEAKDESFRRRYTRQEI----VSDKRNVRGVNRSAEIGI 172

Query: 971  SR--------KGGRGSI---EDSSGR 927
             R        K G  S+   ED S R
Sbjct: 173  QRINKDVKWSKSGESSVTVQEDESFR 198


>emb|CAN72260.1| hypothetical protein VITISV_035448 [Vitis vinifera]
          Length = 1032

 Score = 57.4 bits (137), Expect = 1e-05
 Identities = 57/203 (28%), Positives = 85/203 (41%), Gaps = 29/203 (14%)
 Frame = -1

Query: 1307 ANGLADSGKFIEKQFEFKPTFDDYLKAMESVKTGR------------ETKPVGKDVRRVS 1164
            +NG +     ++K+ EFKP+F +YLK MESV+TGR             +   GK V R+ 
Sbjct: 56   SNGRSADNGLLDKELEFKPSFGEYLKTMESVRTGRGKNQSRNLNRSKSSSRRGKGVLRM- 114

Query: 1163 EAFEEGKERVESGS-EGYSHRMGNR---KREGLYEKSRTRIR--------PMGVDNSEVS 1020
             + E  +E V  G  +G+ ++       K++ LY+ S  R           +G +N + +
Sbjct: 115  PSLERDEENVNLGDFKGHPYQEKKSKFGKQDELYKNSGGRSARGLVQDELDLGWENDDEN 174

Query: 1019 FREGNNGVTRDVEEGFSRKGGRGSIEDSSGRNKIGFRKRN--NGVLKE---SNKFGWRRG 855
              E   G      +   +  GR    DSSG    G RKR+  NG   E     K G ++G
Sbjct: 175  SSEILEGKGSSKSQRDDKLKGRAXKADSSGLGSKGMRKRHEMNGAQVEKVGDEKIGIKKG 234

Query: 854  PSEDDGAGSFRGSGRHKLEFGEA 786
                   G     G   LE   A
Sbjct: 235  EFNKSRKGFLEKGGNDILEIERA 257