BLASTX nr result
ID: Coptis21_contig00012285
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00012285
(1886 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280389.1| PREDICTED: SWI/SNF complex subunit SWI3A [Vi... 479 e-133
emb|CAN80839.1| hypothetical protein VITISV_043833 [Vitis vinifera] 476 e-132
ref|XP_002322279.1| chromatin remodeling complex subunit [Populu... 415 e-113
ref|XP_002511138.1| DNA binding protein, putative [Ricinus commu... 400 e-109
ref|XP_003602787.1| SWI/SNF complex subunit SMARCC2 [Medicago tr... 398 e-108
>ref|XP_002280389.1| PREDICTED: SWI/SNF complex subunit SWI3A [Vitis vinifera]
gi|297734457|emb|CBI15704.3| unnamed protein product
[Vitis vinifera]
Length = 563
Score = 479 bits (1234), Expect = e-133
Identities = 277/560 (49%), Positives = 351/560 (62%), Gaps = 7/560 (1%)
Frame = -2
Query: 1861 MEVTEDGNSKSHFPAYEPDQELYTIPSSSGWFTWDDIDETERQSLKEFFNWSSISKTPKI 1682
ME T D +SK EP+ +LYTIP S WF+WD+I E E+ SLKEFF+ SSIS+TPKI
Sbjct: 1 MESTPDPSSKLTRHD-EPELDLYTIPIHSSWFSWDEIHEKEKISLKEFFDGSSISRTPKI 59
Query: 1681 YKEYRDFIINKYREDPKRRLKFTEIRKSLIGDVSLIYKVYCFLEKWGLINFGVVEKVGGD 1502
YKEYRDFII+KYREDP RRL F EIRKSL+GDVSL++KV+ FLE+WGLINFG G D
Sbjct: 60 YKEYRDFIISKYREDPSRRLTFAEIRKSLVGDVSLLHKVFLFLERWGLINFGA--PGGED 117
Query: 1501 SWSVDEASDK-KVVFEEGAPNGVRVVAFPNSSRP---XXXXXXXXXXXXXGLRLPPLASC 1334
S +V E +++ +V E+GAPNG+RVVA PNS +P G RLPPLAS
Sbjct: 118 SAAVAEGAERHRVRSEDGAPNGIRVVAMPNSLKPITMPLTLDVNGEVDENGFRLPPLASY 177
Query: 1333 NDVFGG--GLKGLSCVKCGEVFASKSGEVN-KKENAVTCLKCLKNGNIEESKSENDVNFK 1163
+DVF KGL C CG+ SG N K + V C+KC KNGN E++S +D F
Sbjct: 178 SDVFSDLTKEKGLVCGNCGD--NCDSGHYNCLKGSPVICVKCFKNGNYGENRSVDDFKFN 235
Query: 1162 DSKDGSDNREADSWTETEIXXXXXXXXLHGDDWDLVARDVKTKKRSDCISKLIQLPFGEL 983
D + NR A WTE E HGDDW+LV ++V+TK + DCISKLI+LPFGEL
Sbjct: 236 DCNENRGNRGA-VWTEAETLLLLESVLKHGDDWELVVQNVQTKTKLDCISKLIELPFGEL 294
Query: 982 MLNTTNGKGDGRKSNSSTINAAQGQSTQIELQDPIKEKDLCHYQVSESDQNGDGETEEPP 803
ML ++ GK N+S+I Q T +E Q+ IK Q++ES+QNGD E + PP
Sbjct: 295 MLGSSLGKSRASNDNTSSIKPVQ---TSLESQENIKNGGQGDEQINESEQNGDAENQGPP 351
Query: 802 LKRRCIDRLADASDSLMKQVAHLSTVVSPHVXXXXXXXXXXALCEENPYARVYFEDVGDD 623
LKR+CI L+DA SLM+QVA +ST+V PH+ ALC+ENP + F+ D+
Sbjct: 352 LKRKCITSLSDAGISLMRQVAVISTMVGPHISAAAADAAVAALCDENPCVKDIFDGAEDN 411
Query: 622 IANVLDSPTSSSKATSLLNVEDSKMVERHAQSESQVGDAEKNPIALTLRXXXXXXXXXXX 443
+ L SP ++K L VEDS++ ER SE Q +EKN I L L+
Sbjct: 412 VTEELGSPIRNNKLERSLMVEDSEINERPILSEIQKTSSEKNAIPLPLQMRAAIATALGA 471
Query: 442 XXXXXXXXADQEDREIEHLVATVIETQLRKIQCKIKHFEELQLIMENEYTQIQELKESXX 263
ADQE REIEHLVAT+IETQ++K+ CKI+HFE+L+LIME EYT ++ELKES
Sbjct: 472 AAANAKSLADQEHREIEHLVATIIETQMKKLHCKIQHFEDLELIMEKEYTHLKELKESII 531
Query: 262 XXXXXXXXXVFSAGIARWRD 203
VF+AGI+RWRD
Sbjct: 532 AERIDILQRVFNAGISRWRD 551
>emb|CAN80839.1| hypothetical protein VITISV_043833 [Vitis vinifera]
Length = 563
Score = 476 bits (1225), Expect = e-132
Identities = 276/560 (49%), Positives = 349/560 (62%), Gaps = 7/560 (1%)
Frame = -2
Query: 1861 MEVTEDGNSKSHFPAYEPDQELYTIPSSSGWFTWDDIDETERQSLKEFFNWSSISKTPKI 1682
ME T D +SK EP+ +LYTIP S WF+WD+I E E+ SLKEFF+ SSIS+TPKI
Sbjct: 1 MESTPDPSSKLTRHD-EPELDLYTIPIHSSWFSWDEIHEKEKISLKEFFDGSSISRTPKI 59
Query: 1681 YKEYRDFIINKYREDPKRRLKFTEIRKSLIGDVSLIYKVYCFLEKWGLINFGVVEKVGGD 1502
YKEYRDFII+KYREDP RRL F EIRKSL+GDVSL++KV+ FLE+WGLINFG G D
Sbjct: 60 YKEYRDFIISKYREDPSRRLTFAEIRKSLVGDVSLLHKVFLFLERWGLINFGA--PGGED 117
Query: 1501 SWSVDEASDK-KVVFEEGAPNGVRVVAFPNSSRP---XXXXXXXXXXXXXGLRLPPLASC 1334
S +V E +++ +V E+GAPNG+RVVA PNS +P G RLPPLAS
Sbjct: 118 SAAVAEGAERHRVRSEDGAPNGIRVVAMPNSLKPITMPLTLDVNGEVDENGFRLPPLASY 177
Query: 1333 NDVFGG--GLKGLSCVKCGEVFASKSGEVN-KKENAVTCLKCLKNGNIEESKSENDVNFK 1163
+DVF KGL C CG+ SG N K + V C+KC KNGN E++S +D F
Sbjct: 178 SDVFSDLTKEKGLVCGNCGD--NCDSGHYNCLKGSPVICVKCFKNGNYGENRSVDDFKFN 235
Query: 1162 DSKDGSDNREADSWTETEIXXXXXXXXLHGDDWDLVARDVKTKKRSDCISKLIQLPFGEL 983
D + NR A WTE E HGDDW+LV ++V+TK + DCISKLI+LPFGEL
Sbjct: 236 DCNENRGNRGA-VWTEAETLLLLESVLKHGDDWELVVQNVQTKTKLDCISKLIELPFGEL 294
Query: 982 MLNTTNGKGDGRKSNSSTINAAQGQSTQIELQDPIKEKDLCHYQVSESDQNGDGETEEPP 803
ML ++ GK N+S+I Q T +E Q+ IK Q++ES+QNGD E + PP
Sbjct: 295 MLGSSLGKSRASNDNTSSIKPVQ---TSLESQENIKNGGQGDEQINESEQNGDAENQGPP 351
Query: 802 LKRRCIDRLADASDSLMKQVAHLSTVVSPHVXXXXXXXXXXALCEENPYARVYFEDVGDD 623
LKR+CI L+DA SLM QVA +ST+V PH+ ALC+ENP + F+ D+
Sbjct: 352 LKRKCITSLSDAGISLMXQVAVISTMVGPHISAAAADAAVAALCDENPCVKDIFDGAEDN 411
Query: 622 IANVLDSPTSSSKATSLLNVEDSKMVERHAQSESQVGDAEKNPIALTLRXXXXXXXXXXX 443
+ L SP ++ L VEDS++ ER SE Q +EKN I L L+
Sbjct: 412 VTEELGSPIRNNXLERSLMVEDSEINERPILSEIQKTSSEKNAIPLPLQMRAAIATALGA 471
Query: 442 XXXXXXXXADQEDREIEHLVATVIETQLRKIQCKIKHFEELQLIMENEYTQIQELKESXX 263
ADQE REIEHLVAT+IETQ++K+ CKI+HFE+L+LIME EYT ++ELKES
Sbjct: 472 AAANAKSLADQEHREIEHLVATIIETQMKKLHCKIQHFEDLELIMEKEYTHLKELKESII 531
Query: 262 XXXXXXXXXVFSAGIARWRD 203
VF+AGI+RWRD
Sbjct: 532 AERIDILQRVFNAGISRWRD 551
>ref|XP_002322279.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222869275|gb|EEF06406.1| chromatin remodeling complex
subunit [Populus trichocarpa]
Length = 570
Score = 415 bits (1066), Expect = e-113
Identities = 244/550 (44%), Positives = 327/550 (59%), Gaps = 12/550 (2%)
Frame = -2
Query: 1813 EPDQELYTIPSSSGWFTWDDIDETERQSLKEFFNWSSISKTPKIYKEYRDFIINKYREDP 1634
EP+ +LYTIPS S WF+W DI ETER +L+EFF+ SSI++TPKIYKEYRDFIINKYREDP
Sbjct: 18 EPELDLYTIPSYSSWFSWHDIHETERVALREFFDGSSITRTPKIYKEYRDFIINKYREDP 77
Query: 1633 KRRLKFTEIRKSLIGDVSLIYKVYCFLEKWGLINFGVV--EKVGGDSWSVDEASDKKVVF 1460
RRL FTEIRKSL+GDVSL+ KV+ FL WGLINF E++G S +VD V
Sbjct: 78 SRRLTFTEIRKSLVGDVSLLNKVFLFLNNWGLINFSCEKNEEIGLGSGNVD------VRV 131
Query: 1459 EEGAPNGVRVVAFPNSSRP-------XXXXXXXXXXXXXGLRLPPLASCNDVFG---GGL 1310
E+GAPNGVR+V P+ +P GL+LPPLAS +DVFG G
Sbjct: 132 EDGAPNGVRIVEMPDKLKPISVGSVQSSAEGSGGGGSGTGLKLPPLASYSDVFGELVGKK 191
Query: 1309 KGLSCVKCGEVFASKSGEVNKKENAVTCLKCLKNGNIEESKSENDVNFKDSKDGSDNREA 1130
K + C CG S E + K + + C KC +G E+KS++D K S + + + A
Sbjct: 192 KEVVCGNCGGSCDSGQYE-HSKGDYLICQKCFNDGTYGENKSKDDFKLKVSAENNGSNAA 250
Query: 1129 DSWTETEIXXXXXXXXLHGDDWDLVARDVKTKKRSDCISKLIQLPFGELMLNTTNGKGDG 950
WTE E HG+DWDLVA++VKTK + DCISKLI+LPFG+L+L++T GKG+
Sbjct: 251 -VWTEEETLRLLESVSRHGNDWDLVAQNVKTKTKLDCISKLIELPFGDLILSSTYGKGNS 309
Query: 949 RKSNSSTINAAQGQSTQIELQDPIKEKDLCHYQVSESDQNGDGETEEPPLKRRCIDRLAD 770
ST N+ Q + E QD K +D H Q++ +++ GD + P LKRR I ++D
Sbjct: 310 SGQIGSTNNSKQVPAAPSEHQDDTKHEDQLHEQMNANEEKGDVMDDGPLLKRRRITSVSD 369
Query: 769 ASDSLMKQVAHLSTVVSPHVXXXXXXXXXXALCEENPYARVYFEDVGDDIANVLDSPTSS 590
A SLMKQVA +ST+V P + ALC+E R F+ D +N SP+
Sbjct: 370 AGGSLMKQVALISTMVGPDITAAAAEAAVAALCDETACPREIFDGEEDFPSNGFSSPSFH 429
Query: 589 SKATSLLNVEDSKMVERHAQSESQVGDAEKNPIALTLRXXXXXXXXXXXXXXXXXXXADQ 410
SK+ + V+ S++ + QS ++ A +N I L+LR ADQ
Sbjct: 430 SKSKRVDEVDASEVKQTPTQSVNEEASAWQNDIPLSLRLRAAVATTLGAAAAHAKLLADQ 489
Query: 409 EDREIEHLVATVIETQLRKIQCKIKHFEELQLIMENEYTQIQELKESXXXXXXXXXXXVF 230
EDRE+E+L+AT++ETQL+K+ KIKHF++L+LIME EY ++ EL ES
Sbjct: 490 EDREVENLMATIVETQLKKLHHKIKHFDDLELIMEKEYAELDELTESLTEERIDVLQRAI 549
Query: 229 SAGIARWRDH 200
AGI++ RDH
Sbjct: 550 RAGISKSRDH 559
>ref|XP_002511138.1| DNA binding protein, putative [Ricinus communis]
gi|223550253|gb|EEF51740.1| DNA binding protein, putative
[Ricinus communis]
Length = 547
Score = 400 bits (1028), Expect = e-109
Identities = 239/543 (44%), Positives = 315/543 (58%), Gaps = 2/543 (0%)
Frame = -2
Query: 1813 EPDQELYTIPSSSGWFTWDDIDETERQSLKEFFNWSSISKTPKIYKEYRDFIINKYREDP 1634
EP+ +LYTIPS S WF WD+I ETER +LKEFF+ SSI++TPKIYKEYRDFIINKYREDP
Sbjct: 13 EPEFDLYTIPSYSSWFAWDNIHETERAALKEFFDGSSITRTPKIYKEYRDFIINKYREDP 72
Query: 1633 KRRLKFTEIRKSLIGDVSLIYKVYCFLEKWGLINFGVVEKVGGDSWSVDEASDKKVVFEE 1454
RRL FTEIRKSL+GDV+L+ KV+ FL+ GLINFG DS +E + +V E+
Sbjct: 73 SRRLTFTEIRKSLVGDVTLLNKVFRFLDNSGLINFGADSAPYNDS-EREEIGNFRV--ED 129
Query: 1453 GAPNGVRVVAFPNSSRPXXXXXXXXXXXXXGLRLPPLASCNDVFGGGLKGLSCVKCGEVF 1274
G PNG+RVVA PNS +P LRLPPL S +DVFG + G C CGE
Sbjct: 130 GPPNGIRVVAMPNSLKPLSVPPQNAEIVENVLRLPPLTSHSDVFGKQI-GFVCGNCGETC 188
Query: 1273 ASKSGEVNKKENAVTCLKCLKNGNIEESKSENDVNFKDSKDGSDNREADSWTETEIXXXX 1094
S E +K E + C C NG+ ++ S++D F DS D S W+E E
Sbjct: 189 NSGRYECSKGE-YILCTNCFNNGDYGQNNSKDDYKFNDSVDHS---SGTVWSEAETILLL 244
Query: 1093 XXXXLHGDDWDLVARDVKTKKRSDCISKLIQLPFGELMLNTT-NGKGDGRKSNSSTINAA 917
HGD+WDLV RDV+TK + +CI+KLI+LPF L+L++T G G ++ +
Sbjct: 245 ESVLKHGDNWDLVVRDVQTKSKLECIAKLIELPFRNLLLSSTLVGDTSGLSGSADYLKPV 304
Query: 916 QGQSTQIELQDPIKE-KDLCHYQVSESDQNGDGETEEPPLKRRCIDRLADASDSLMKQVA 740
S+ E QD + + L + S+QNGD E PLKR+ I L+DA LMKQVA
Sbjct: 305 PVSSS--EKQDAVDNIEGLLPESQNVSEQNGDAADEGSPLKRKRIVSLSDAGSCLMKQVA 362
Query: 739 HLSTVVSPHVXXXXXXXXXXALCEENPYARVYFEDVGDDIANVLDSPTSSSKATSLLNVE 560
+ST+ P V ALC+E R F D A L SPT S+ +L V+
Sbjct: 363 LISTMAGPDVASAAAKAAIGALCDETSCPREIFGGKEDFPAKGLWSPTLCSRPERVLYVK 422
Query: 559 DSKMVERHAQSESQVGDAEKNPIALTLRXXXXXXXXXXXXXXXXXXXADQEDREIEHLVA 380
D+++ ER Q E++ +N I LTLR AD+ED++IE LV
Sbjct: 423 DTEIKERSTQLETEDTSLGQNDIPLTLRLRTAVATSLGAAAAHAKLLADEEDQKIEKLVT 482
Query: 379 TVIETQLRKIQCKIKHFEELQLIMENEYTQIQELKESXXXXXXXXXXXVFSAGIARWRDH 200
TV+E QL+K+Q KIKHF+ L+LIME EY +++EL+ES AG+++WRDH
Sbjct: 483 TVVEAQLKKLQYKIKHFDNLELIMEKEYAELEELQESLIEERMDVVQRAIMAGLSKWRDH 542
Query: 199 HSS 191
++
Sbjct: 543 SAA 545
>ref|XP_003602787.1| SWI/SNF complex subunit SMARCC2 [Medicago truncatula]
gi|355491835|gb|AES73038.1| SWI/SNF complex subunit
SMARCC2 [Medicago truncatula]
Length = 540
Score = 398 bits (1023), Expect = e-108
Identities = 241/555 (43%), Positives = 319/555 (57%), Gaps = 9/555 (1%)
Frame = -2
Query: 1822 PAYEPDQELYTIPSSSGWFTWDDIDETERQSLKEFFNWSSISKTPKIYKEYRDFIINKYR 1643
P + + ELYTIPSSS WF WD+I ETE+ + KE+F+ +SI++TPKIYKEYRDFIINKYR
Sbjct: 7 PISDSELELYTIPSSSKWFAWDEIHETEKTAFKEYFDGTSITRTPKIYKEYRDFIINKYR 66
Query: 1642 EDPKRRLKFTEIRKSLIGDVSLIYKVYCFLEKWGLINFGVVEKVG-GDSWSVDEASDKKV 1466
E+P RRL FTE+RKSL+GDV+ + KV+ FLE WGLIN+G G++ E K+
Sbjct: 67 EEPSRRLTFTEVRKSLVGDVTFLNKVFLFLECWGLINYGAPSAGNDGEAEKEHEKERCKL 126
Query: 1465 VFEEGAPNGVRVVAFPNSSRP------XXXXXXXXXXXXXGLRLPPLASCNDVFGGGL-- 1310
EEGAPNG+RVVA PNS +P G+++ PLAS +DV+G +
Sbjct: 127 KVEEGAPNGIRVVATPNSLKPISLPRDTKIAAGGGDESGAGVKIAPLASYSDVYGDLIRR 186
Query: 1309 KGLSCVKCGEVFASKSGEVNKKENAVTCLKCLKNGNIEESKSENDVNFKDSKDGSDNREA 1130
K ++C CG+ S + K+N + C KC KNGN E +S D +S + S N A
Sbjct: 187 KEVNCGNCGDKCGSGHYR-STKDNFIICTKCFKNGNYGEKRSMEDFKLNESSEISANHSA 245
Query: 1129 DSWTETEIXXXXXXXXLHGDDWDLVARDVKTKKRSDCISKLIQLPFGELMLNTTNGKGDG 950
WTE E HGDDW+LVA+ V+TK + +CISKLI+LPFGELML + +
Sbjct: 246 -VWTEGETLLLLESVLKHGDDWELVAQSVRTKTKLECISKLIELPFGELMLASVRRNDNS 304
Query: 949 RKSNSSTINAAQGQSTQIELQDPIKEKDLCHYQVSESDQNGDGETEEPPLKRRCIDRLAD 770
N Q Q + + Q+ +D +E +QNGD E P KRR + L+D
Sbjct: 305 NSVTGIVNNRNQVQVSSSDHQETSMTQDQSSEPKNEVEQNGDAVNENPS-KRRRVSTLSD 363
Query: 769 ASDSLMKQVAHLSTVVSPHVXXXXXXXXXXALCEENPYARVYFEDVGDDIANVLDSPTSS 590
+S SLMKQV LSTVV PHV ALC+EN R F DV +D +S
Sbjct: 364 SSSSLMKQVGLLSTVVDPHVTAAAASAAITALCDENSLPRDIF-DVEED--------NAS 414
Query: 589 SKATSLLNVEDSKMVERHAQSESQVGDAEKNPIALTLRXXXXXXXXXXXXXXXXXXXADQ 410
++A L E +MVE QSE K+ I LTLR ADQ
Sbjct: 415 ARA---LEAEGLEMVEGSTQSE------VKDDIPLTLRIRAAIGTALGATAARAKLLADQ 465
Query: 409 EDREIEHLVATVIETQLRKIQCKIKHFEELQLIMENEYTQIQELKESXXXXXXXXXXXVF 230
EDREIEHLVAT+IE Q+ K+Q K+KHF+EL+L+ME E+ +++ELK+S F
Sbjct: 466 EDREIEHLVATIIEAQVEKLQQKVKHFDELELLMEKEHAEMEELKDSILTERIDVLRKTF 525
Query: 229 SAGIARWRDHHSSVK 185
+G+ARW+ H+ S+K
Sbjct: 526 KSGVARWK-HYPSLK 539