BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00012260
         (1335 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containi...   466   e-129
ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   462   e-128
ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containi...   461   e-127
ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containi...   446   e-123
gb|ACU21163.1| unknown [Glycine max]                                  446   e-123

>ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
            chloroplastic [Vitis vinifera]
            gi|296084180|emb|CBI24568.3| unnamed protein product
            [Vitis vinifera]
          Length = 516

 Score =  466 bits (1200), Expect = e-129
 Identities = 235/380 (61%), Positives = 288/380 (75%)
 Frame = +1

Query: 196  SITYPKSPPTPLLIQTPYKTPQTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETFFHI 375
            ++ +PKS PTPLLI    +   TK QAL+A+++D+Q SI  GI +D +IFSSLLET F +
Sbjct: 34   NLVFPKSSPTPLLINHKPRN-HTKLQALEALLRDLQASIQDGITVDAQIFSSLLETCFQL 92

Query: 376  QSINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETAHQVFDEMYKRDLSAFPWNS 555
            Q+ +HGI++H LIP +                   G IE AH++FD+M +R+ SAF WNS
Sbjct: 93   QAFDHGIRIHRLIPTSLLRKSVALSSKLLRLYASIGRIEEAHRLFDQMSRRNRSAFAWNS 152

Query: 556  LISGYAELGRYEDALALYFQMEEEGVEPDQFTFPRVLKACAGLGSIRVGEAVHRDIVRRG 735
            LISGYAELG YEDA+ALYFQMEEEGV PD+FTFPRVLKAC G+GSI VGE VHR +VR G
Sbjct: 153  LISGYAELGLYEDAMALYFQMEEEGVVPDRFTFPRVLKACGGIGSISVGEEVHRHVVRCG 212

Query: 736  FLLDGFVLNALVDMYAKCGDIVMARKVFNKIGVRDSVSWNSMLTGYIHHGLMVEALDIFR 915
            F  DGFVLNALVDMYAKCGDIV ARKVF+KI  RDSVSWNSMLTGYI HGL ++AL IFR
Sbjct: 213  FADDGFVLNALVDMYAKCGDIVKARKVFDKIVCRDSVSWNSMLTGYIRHGLPLQALSIFR 272

Query: 916  GMIDDGFEPDSVAISTILSKFSSSKVAFEVHAWVLRRGHEQSLSIANSLIALYSEQGKLD 1095
             M+  GFEPD+VAIST+++   S K+A ++H WVLRRG + +LSIANSLI LYS  GKLD
Sbjct: 273  RMLQYGFEPDAVAISTVVTGVPSLKLAGQIHGWVLRRGVQWNLSIANSLIVLYSNHGKLD 332

Query: 1096 EACWLFDMMVDRDVVSWNAIISGHWKHPQALEYFNQMENFNISPDSVTFVSLLTVCAHLG 1275
            +ACWLFD M +RDVVSWN+IIS H K  +A+ YF++M+  ++ PD VTFVSLL+ CAHLG
Sbjct: 333  QACWLFDHMPERDVVSWNSIISAHRKDLKAITYFSRMQKADVLPDVVTFVSLLSACAHLG 392

Query: 1276 LVEDGRELFVKMKNRYGIKP 1335
            LV+DG  LF  M+  YG+ P
Sbjct: 393  LVKDGEGLFSMMREDYGMIP 412


>ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g25270, chloroplastic-like [Cucumis sativus]
          Length = 489

 Score =  462 bits (1190), Expect = e-128
 Identities = 232/379 (61%), Positives = 282/379 (74%)
 Frame = +1

Query: 199  ITYPKSPPTPLLIQTPYKTPQTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETFFHIQ 378
            +++PKS PTPLLI  P    Q+K QALDA++ D++ SI+ G+ ID EIFSSLLE  + +Q
Sbjct: 10   LSFPKSSPTPLLIH-PKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQ 68

Query: 379  SINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETAHQVFDEMYKRDLSAFPWNSL 558
            +I+HGI++H LIP N                   G +E AHQVFDEM  R+ SAF WNSL
Sbjct: 69   AIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSL 128

Query: 559  ISGYAELGRYEDALALYFQMEEEGVEPDQFTFPRVLKACAGLGSIRVGEAVHRDIVRRGF 738
            ISGYAELG YEDALALYFQMEEEGVEPD FTFPRVLKAC G+GSI++GEAVHR +VR GF
Sbjct: 129  ISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGF 188

Query: 739  LLDGFVLNALVDMYAKCGDIVMARKVFNKIGVRDSVSWNSMLTGYIHHGLMVEALDIFRG 918
              D FVLNALVDMY+KCG IV ARKVF++I  +D VSWNSMLTGY  HGL  EALDIF  
Sbjct: 189  AGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQ 248

Query: 919  MIDDGFEPDSVAISTILSKFSSSKVAFEVHAWVLRRGHEQSLSIANSLIALYSEQGKLDE 1098
            MI +G+EPDSVA+ST+LS  SS K    +H WV+R G E +LSIANSLI +Y++ GKL+ 
Sbjct: 249  MIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNR 308

Query: 1099 ACWLFDMMVDRDVVSWNAIISGHWKHPQALEYFNQMENFNISPDSVTFVSLLTVCAHLGL 1278
            A WLF  M  +D+VSWN+IIS H+   +AL YF  ME+  +SPD VTFVSLL+ CAHLGL
Sbjct: 309  AKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGL 368

Query: 1279 VEDGRELFVKMKNRYGIKP 1335
            V++G EL+  MK +YGI+P
Sbjct: 369  VKEGXELYFLMKGKYGIRP 387


>ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
            chloroplastic-like [Cucumis sativus]
          Length = 489

 Score =  461 bits (1185), Expect = e-127
 Identities = 231/379 (60%), Positives = 282/379 (74%)
 Frame = +1

Query: 199  ITYPKSPPTPLLIQTPYKTPQTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETFFHIQ 378
            +++PKS PTPLLI  P    Q+K QALDA++ D++ SI+ G+ ID EIFSSLLE  + +Q
Sbjct: 10   LSFPKSSPTPLLIH-PKPFFQSKIQALDAVLTDLEASIDNGLFIDPEIFSSLLELCYQLQ 68

Query: 379  SINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETAHQVFDEMYKRDLSAFPWNSL 558
            +I+HGI++H LIP N                   G +E AHQVFDEM  R+ SAF WNSL
Sbjct: 69   AIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSL 128

Query: 559  ISGYAELGRYEDALALYFQMEEEGVEPDQFTFPRVLKACAGLGSIRVGEAVHRDIVRRGF 738
            ISGYAELG YEDALALYFQMEEEGVEPD FTFPRVLKAC G+GSI++GEAVHR +VR GF
Sbjct: 129  ISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGF 188

Query: 739  LLDGFVLNALVDMYAKCGDIVMARKVFNKIGVRDSVSWNSMLTGYIHHGLMVEALDIFRG 918
              D FVLNALVDMY+KCG IV ARKVF++I  +D VSWNSMLTGY  HGL  EALDIF  
Sbjct: 189  AGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQ 248

Query: 919  MIDDGFEPDSVAISTILSKFSSSKVAFEVHAWVLRRGHEQSLSIANSLIALYSEQGKLDE 1098
            MI +G+EPDSVA+ST+LS  SS K    +H WV+R G E +LSIANSLI +Y++ GKL+ 
Sbjct: 249  MIQEGYEPDSVALSTLLSNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNR 308

Query: 1099 ACWLFDMMVDRDVVSWNAIISGHWKHPQALEYFNQMENFNISPDSVTFVSLLTVCAHLGL 1278
            A WLF  M  +D+VSWN+IIS H+   +AL YF  ME+  +SPD VTFVSLL+ CAHLGL
Sbjct: 309  AKWLFQQMPQKDMVSWNSIISAHFNSAEALTYFEVMESLGVSPDGVTFVSLLSTCAHLGL 368

Query: 1279 VEDGRELFVKMKNRYGIKP 1335
            V++G +L+  MK +YGI+P
Sbjct: 369  VKEGGKLYFLMKGKYGIRP 387


>ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
            chloroplastic-like [Glycine max]
          Length = 526

 Score =  446 bits (1148), Expect = e-123
 Identities = 214/382 (56%), Positives = 285/382 (74%), Gaps = 1/382 (0%)
 Frame = +1

Query: 193  NSITYPKSPPTPLLIQ-TPYKTPQTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETFF 369
            N +++PK   TPLLI   P+  P+TK +AL+ ++KD++ S+ +GI ID EI++SLLET +
Sbjct: 44   NGLSFPKPKSTPLLIHHRPH--PKTKLEALEQVVKDLEASVEKGIKIDPEIYASLLETCY 101

Query: 370  HIQSINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETAHQVFDEMYKRDLSAFPW 549
              Q+I HGI++H LIP +                  CG ++ AH +FD+M KRD SAFPW
Sbjct: 102  RFQAILHGIRVHRLIPTSLLHKNVGISSKLLRLYASCGYLDDAHDLFDQMAKRDTSAFPW 161

Query: 550  NSLISGYAELGRYEDALALYFQMEEEGVEPDQFTFPRVLKACAGLGSIRVGEAVHRDIVR 729
            NSLISGYA++G Y++A+ALYFQM EEGVE D FTFPRVLK CAG+GS++VGE VHR  +R
Sbjct: 162  NSLISGYAQVGHYDEAIALYFQMVEEGVEADLFTFPRVLKVCAGIGSVQVGEEVHRHAIR 221

Query: 730  RGFLLDGFVLNALVDMYAKCGDIVMARKVFNKIGVRDSVSWNSMLTGYIHHGLMVEALDI 909
             GF  DGF+LNALVDMY+KCGDIV ARKVF+K+  RD VSWNSMLT Y+HHGL V+A++I
Sbjct: 222  AGFAADGFILNALVDMYSKCGDIVKARKVFDKMPHRDPVSWNSMLTAYVHHGLEVQAMNI 281

Query: 910  FRGMIDDGFEPDSVAISTILSKFSSSKVAFEVHAWVLRRGHEQSLSIANSLIALYSEQGK 1089
            FR M+ +G EPDSV+IST+L+  SS  +  ++H WV+ +GHE +LSIANSLI +YS  G+
Sbjct: 282  FRQMLLEGCEPDSVSISTVLTGVSSLGLGVQIHGWVISQGHEWNLSIANSLIMMYSNHGR 341

Query: 1090 LDEACWLFDMMVDRDVVSWNAIISGHWKHPQALEYFNQMENFNISPDSVTFVSLLTVCAH 1269
            L++A W+F++M +RDVVSWN+IIS H K  +AL +F QME   + PD +TFVS+L+ CA+
Sbjct: 342  LEKARWVFNLMPERDVVSWNSIISAHCKRREALAFFEQMEGAGVQPDKITFVSILSACAY 401

Query: 1270 LGLVEDGRELFVKMKNRYGIKP 1335
            LGL++DG  LF  M  +Y IKP
Sbjct: 402  LGLLKDGERLFALMCGKYKIKP 423


>gb|ACU21163.1| unknown [Glycine max]
          Length = 481

 Score =  446 bits (1148), Expect = e-123
 Identities = 214/382 (56%), Positives = 285/382 (74%), Gaps = 1/382 (0%)
 Frame = +1

Query: 193  NSITYPKSPPTPLLIQ-TPYKTPQTKDQALDAIIKDIQTSINRGIIIDTEIFSSLLETFF 369
            N +++PK   TPLLI   P+  P+TK +AL+ ++KD++ S+ +GI ID EI++SLLET +
Sbjct: 44   NGLSFPKPKSTPLLIHHRPH--PKTKLEALEQVVKDLEASVEKGIKIDPEIYASLLETCY 101

Query: 370  HIQSINHGIQLHHLIPPNXXXXXXXXXXXXXXXXXXCGLIETAHQVFDEMYKRDLSAFPW 549
              Q+I HGI++H LIP +                  CG ++ AH +FD+M KRD SAFPW
Sbjct: 102  RFQAILHGIRVHRLIPTSLLHKNVGISSKLLRLYASCGYLDDAHDLFDQMAKRDTSAFPW 161

Query: 550  NSLISGYAELGRYEDALALYFQMEEEGVEPDQFTFPRVLKACAGLGSIRVGEAVHRDIVR 729
            NSLISGYA++G Y++A+ALYFQM EEGVE D FTFPRVLK CAG+GS++VGE VHR  +R
Sbjct: 162  NSLISGYAQVGHYDEAIALYFQMVEEGVEADLFTFPRVLKVCAGIGSVQVGEEVHRHAIR 221

Query: 730  RGFLLDGFVLNALVDMYAKCGDIVMARKVFNKIGVRDSVSWNSMLTGYIHHGLMVEALDI 909
             GF  DGF+LNALVDMY+KCGDIV ARKVF+K+  RD VSWNSMLT Y+HHGL V+A++I
Sbjct: 222  AGFAADGFILNALVDMYSKCGDIVKARKVFDKMPHRDPVSWNSMLTAYVHHGLEVQAMNI 281

Query: 910  FRGMIDDGFEPDSVAISTILSKFSSSKVAFEVHAWVLRRGHEQSLSIANSLIALYSEQGK 1089
            FR M+ +G EPDSV+IST+L+  SS  +  ++H WV+ +GHE +LSIANSLI +YS  G+
Sbjct: 282  FRQMLLEGCEPDSVSISTVLTGVSSLGLGVQIHGWVISQGHEWNLSIANSLIMMYSNHGR 341

Query: 1090 LDEACWLFDMMVDRDVVSWNAIISGHWKHPQALEYFNQMENFNISPDSVTFVSLLTVCAH 1269
            L++A W+F++M +RDVVSWN+IIS H K  +AL +F QME   + PD +TFVS+L+ CA+
Sbjct: 342  LEKARWVFNLMPERDVVSWNSIISAHCKRREALAFFEQMEGAGVQPDKITFVSILSACAY 401

Query: 1270 LGLVEDGRELFVKMKNRYGIKP 1335
            LGL++DG  LF  M  +Y IKP
Sbjct: 402  LGLLKDGERLFALMCGKYKIKP 423