BLASTX nr result

ID: Coptis21_contig00012076 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00012076
         (403 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278877.1| PREDICTED: uncharacterized protein LOC100260...    72   4e-11
emb|CAN63850.1| hypothetical protein VITISV_016795 [Vitis vinifera]    72   4e-11
ref|XP_002527673.1| conserved hypothetical protein [Ricinus comm...    66   3e-09
ref|XP_002329510.1| predicted protein [Populus trichocarpa] gi|2...    64   1e-08
ref|XP_002326726.1| predicted protein [Populus trichocarpa] gi|2...    60   1e-07

>ref|XP_002278877.1| PREDICTED: uncharacterized protein LOC100260856 [Vitis vinifera]
          Length = 222

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 60/164 (36%), Positives = 76/164 (46%), Gaps = 30/164 (18%)
 Frame = -1

Query: 403 ERLLQLCPDCATVRPCGCHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGVGVTGRMST 224
           ERL  LCPDCA VRPC C                              S GVG  GR+S 
Sbjct: 32  ERLASLCPDCARVRPCAC-------CTTSSSSSSTLSRFSTGGGGDADSSGVGSVGRVSN 84

Query: 223 LIDTEPAFQRSRSAAFPFL-YRSKI-------------SNSSPRKWFWNKVFK------- 107
           LID+EPAF+RSRS A PFL  RS+              SN S +  FW+ VFK       
Sbjct: 85  LIDSEPAFRRSRSVAIPFLRSRSRFVGNDLEDGRPPNPSNRS-KSSFWS-VFKSSKIKKP 142

Query: 106 --------KQKDEQVGERKVDVKMVRSKSVGV-IDKDNNGKGRG 2
                   + K ++VGE +   +M+RS+SVG+ +  D+ G G G
Sbjct: 143 EETVAEVEETKKKEVGENEDLKRMMRSRSVGISLFSDSGGGGGG 186


>emb|CAN63850.1| hypothetical protein VITISV_016795 [Vitis vinifera]
          Length = 222

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 61/164 (37%), Positives = 77/164 (46%), Gaps = 30/164 (18%)
 Frame = -1

Query: 403 ERLLQLCPDCATVRPCGCHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGVGVTGRMST 224
           ERL  LCPDCA VRPC C                              S GVG  GR+S 
Sbjct: 32  ERLASLCPDCARVRPCAC-------CTTSSSSSSTLXRFSTGGGGDADSSGVGSVGRVSN 84

Query: 223 LIDTEPAFQRSRSAAFPFL-YRSKI-------------SNSSPRKWFWNKVFK------- 107
           LID+EPAF+RSRS A PFL  RS+              SN S +  FW+ VFK       
Sbjct: 85  LIDSEPAFRRSRSVAIPFLRSRSRFVGNDLEDGRPPNPSNRS-KSSFWS-VFKSSKIKKP 142

Query: 106 --------KQKDEQVGERKVDVKMVRSKSVGV-IDKDNNGKGRG 2
                   + K ++VGE +   +M+RS+SVG+ +  D+ G G G
Sbjct: 143 EETVAEVEETKKKEVGENEDLKRMMRSRSVGISLFSDSGGGGGG 186


>ref|XP_002527673.1| conserved hypothetical protein [Ricinus communis]
           gi|223532978|gb|EEF34744.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 207

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 57/166 (34%), Positives = 75/166 (45%), Gaps = 32/166 (19%)
 Frame = -1

Query: 403 ERLLQLCPDCATVRPCGCHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGVGVTGRMST 224
           ERL  LCPDCA+VRPCGC+                                +G   R+S 
Sbjct: 32  ERLSSLCPDCASVRPCGCYATTTSSSNSSSASFSR----------------IGTVARVSN 75

Query: 223 LIDTEPAFQRSRSAAFPFLYRSKIS---NSSPRK------WFWNKVFK--KQKDEQVG-- 83
           LID+EPAF+RSRS A PF +RSK S   + SPRK       FW++ FK   +    VG  
Sbjct: 76  LIDSEPAFRRSRSVAVPF-FRSKPSVDHDHSPRKDSPKTASFWSR-FKSGSRSKRDVGLN 133

Query: 82  -------------------ERKVDVKMVRSKSVGVIDKDNNGKGRG 2
                              E++  V M +S+SV V D  ++ KG+G
Sbjct: 134 VAAAVVEQGDNNDHNDNSEEQRRKVMMRKSRSVAV-DVKSSSKGKG 178


>ref|XP_002329510.1| predicted protein [Populus trichocarpa] gi|222870219|gb|EEF07350.1|
           predicted protein [Populus trichocarpa]
          Length = 203

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 48/144 (33%), Positives = 63/144 (43%), Gaps = 14/144 (9%)
 Frame = -1

Query: 403 ERLLQLCPDCATVRPCGCHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGVGVTGRMST 224
           ERL  LCPDCA  RPC C+                               GVG  GR+S 
Sbjct: 32  ERLSSLCPDCANARPCACYATTASSSSGYSSSFSSFHRFSSE-------AGVGSVGRVSN 84

Query: 223 LIDTEPAFQRSRSAAFPFL---------YRSKISNSSPRKWFWNKVFK-----KQKDEQV 86
           LI +EP+F+RSRS A PFL         Y S  ++SS    FW+ +FK     +   E+V
Sbjct: 85  LIGSEPSFRRSRSVAVPFLRSKPSADQSYNSHKTSSS----FWS-LFKGGHGNRSMTEEV 139

Query: 85  GERKVDVKMVRSKSVGVIDKDNNG 14
            E +   KM+R      +  D+ G
Sbjct: 140 NEDEERRKMMRKSRSVAVTSDSRG 163


>ref|XP_002326726.1| predicted protein [Populus trichocarpa] gi|222834048|gb|EEE72525.1|
           predicted protein [Populus trichocarpa]
          Length = 223

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 39/101 (38%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
 Frame = -1

Query: 403 ERLLQLCPDCATVRPCGCHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGVGVTGRMST 224
           ERL  LCPDCA+ RPC C+                               G+G  GR+S 
Sbjct: 32  ERLSSLCPDCASARPCTCYATTASSSSGTTSSSSSHCFSSA--------SGIGSVGRVSN 83

Query: 223 LIDTEPAFQRSRSAAFPFLYRSKIS------NSSPRKWFWN 119
           LI++EPAF+RSRS A PFL RSK S      N      FW+
Sbjct: 84  LIESEPAFRRSRSLAVPFL-RSKPSADHSYNNHKASSSFWS 123


Top