BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011945
         (454 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat...   157   8e-37
ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|2...   157   1e-36
ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|2...   157   1e-36
ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat...   156   2e-36
ref|XP_002524089.1| pentatricopeptide repeat-containing protein,...   144   1e-32

>ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g06400, mitochondrial-like [Glycine max]
          Length = 1034

 Score =  157 bits (397), Expect = 8e-37
 Identities = 73/150 (48%), Positives = 110/150 (73%)
 Frame = +2

Query: 5   DIAMEFYKEMVCKNIEVDMNLYKVLMNCLSRSGNILDVRLVGEDMMNVSQVPQQKVYSCI 184
           DIAMEFY EMV K++ +D+ LYK++MNC++RSG+I  V L+G DM+ +S +P++ V+ C+
Sbjct: 277 DIAMEFYNEMVRKDMVLDVRLYKMVMNCMARSGDIAAVSLLGNDMIRLSVMPEKCVHGCM 336

Query: 185 LRSFCVGXXXXXXXXXXXXXXXXNIMLDPENFEVLVKGLCRDGKISDALEIVSIMKQNHV 364
           L+SFC+                 ++ L+PEN+E LV+GLC+ G+I+DALEIV IMK+  +
Sbjct: 337 LKSFCISGSIEEALELIRELKSKDLDLEPENYETLVRGLCKAGRITDALEIVDIMKRRDM 396

Query: 365 VDGNIYGSIINGYLRRNEVSKAVDMFRSMK 454
           VDG ++G IINGYL RN+V +A+++F+ MK
Sbjct: 397 VDGRVHGIIINGYLGRNDVDRALEVFQCMK 426



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 2/151 (1%)
 Frame = +2

Query: 5    DIAMEFYKEMVCKNIEVDMNLYKVLMNCLSRSGNILDVRLVGEDMMNVS-QVPQQKVYSC 181
            D A++ Y EM+      D  L +  + CL   G +LD R   + + N    VP    YS 
Sbjct: 770  DDALKIYGEMISAGYVPDKELIETYLGCLCEVGRVLDARRCTDSLQNFGYTVPLS--YSL 827

Query: 182  ILRSFCVGXXXXXXXXXXXXXXXXNIMLDPENFEVLVKGLCRDGKISDALEIVSIMKQNH 361
             +R+ C                    ++D   F  +V GL R G++ +AL  V +MKQN 
Sbjct: 828  FIRALCRAGKVEEALALHEEVGEEKFIIDQLTFGSIVHGLLRKGRLEEALAKVDVMKQNG 887

Query: 362  VVDG-NIYGSIINGYLRRNEVSKAVDMFRSM 451
            +    +++ S+I  + +  +V KA++ F  M
Sbjct: 888  ITPTIHVFTSLIVHFFKEKQVEKAIETFEEM 918


>ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|222854309|gb|EEE91856.1|
           predicted protein [Populus trichocarpa]
          Length = 1048

 Score =  157 bits (396), Expect = 1e-36
 Identities = 77/151 (50%), Positives = 107/151 (70%)
 Frame = +2

Query: 2   GDIAMEFYKEMVCKNIEVDMNLYKVLMNCLSRSGNILDVRLVGEDMMNVSQVPQQKVYSC 181
           G+IA+E YKEMV + +E +++LYK+L+NCL++SG++  V+ V +DM+ VSQ+P+  V+ C
Sbjct: 290 GEIALEIYKEMVQREMEPNLSLYKMLLNCLAKSGDVSAVQSVADDMIRVSQIPEHDVHVC 349

Query: 182 ILRSFCVGXXXXXXXXXXXXXXXXNIMLDPENFEVLVKGLCRDGKISDALEIVSIMKQNH 361
           +L+S+CV                  I LD E  E LVKGL R  +I+DALEIV IMK+  
Sbjct: 350 VLKSYCVAGRIREALELIRDLKNKEIQLDYEVSETLVKGLSRANRIADALEIVEIMKRKD 409

Query: 362 VVDGNIYGSIINGYLRRNEVSKAVDMFRSMK 454
            VDG +YG IINGYLRRNE+SKA+D+F+SMK
Sbjct: 410 FVDGKVYGIIINGYLRRNELSKALDLFQSMK 440


>ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|222836989|gb|EEE75382.1|
           predicted protein [Populus trichocarpa]
          Length = 1048

 Score =  157 bits (396), Expect = 1e-36
 Identities = 77/151 (50%), Positives = 107/151 (70%)
 Frame = +2

Query: 2   GDIAMEFYKEMVCKNIEVDMNLYKVLMNCLSRSGNILDVRLVGEDMMNVSQVPQQKVYSC 181
           G+IA+E YKEMV + +E +++LYK+L+NCL++SG++  V+ V +DM+ VSQ+P+  V+ C
Sbjct: 290 GEIALEIYKEMVQREMEPNLSLYKMLLNCLAKSGDVSAVQSVADDMIRVSQIPEHDVHVC 349

Query: 182 ILRSFCVGXXXXXXXXXXXXXXXXNIMLDPENFEVLVKGLCRDGKISDALEIVSIMKQNH 361
           +L+S+CV                  I LD E  E LVKGL R  +I+DALEIV IMK+  
Sbjct: 350 VLKSYCVAGRIREALELIRDLKNKEIQLDYEVSETLVKGLSRANRIADALEIVEIMKRKD 409

Query: 362 VVDGNIYGSIINGYLRRNEVSKAVDMFRSMK 454
            VDG +YG IINGYLRRNE+SKA+D+F+SMK
Sbjct: 410 FVDGKVYGIIINGYLRRNELSKALDLFQSMK 440


>ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g06400, mitochondrial-like [Vitis vinifera]
          Length = 1048

 Score =  156 bits (394), Expect = 2e-36
 Identities = 74/149 (49%), Positives = 106/149 (71%)
 Frame = +2

Query: 5   DIAMEFYKEMVCKNIEVDMNLYKVLMNCLSRSGNILDVRLVGEDMMNVSQVPQQKVYSCI 184
           DIA+EFYKEMV K + +DM+LY++L+ CL+ SG+I  V+LV +DM+  SQ+P++ V+SC+
Sbjct: 292 DIALEFYKEMVQKEMGLDMSLYELLLTCLAGSGDIAGVQLVADDMIRRSQIPERDVFSCM 351

Query: 185 LRSFCVGXXXXXXXXXXXXXXXXNIMLDPENFEVLVKGLCRDGKISDALEIVSIMKQNHV 364
           L+SFC+                 N+ L+P +FE LVKGLCR  +I+DA EIV IMK+  V
Sbjct: 352 LKSFCIAGRIREALELIRDLNDKNLTLEPNDFETLVKGLCRADRITDAAEIVDIMKKRKV 411

Query: 365 VDGNIYGSIINGYLRRNEVSKAVDMFRSM 451
           VD  +YG II+GYLRRN++ KA D+ ++M
Sbjct: 412 VDAKVYGIIISGYLRRNDIPKAFDVLQTM 440



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 3/153 (1%)
 Frame = +2

Query: 5    DIAMEFYKEMVCKNIEVDMNLYKVLMNCL-SRSGNILDVRL-VGEDMMNVSQVPQQKVYS 178
            +IA+  + EM   + + + + YK L+ CL  R G  +D  +    +M+    VP +++  
Sbjct: 749  EIALRNFAEMKANDCKPNGSTYKYLIICLCGRKGRKVDEAIKTFLEMIRAGYVPDKELVE 808

Query: 179  CILRSFCVGXXXXXXXXXXXXXXXXNIMLDPENFEVLVKGLCRDGKISDALEIVSIMKQN 358
              L+  C                     + P ++ + ++ LCR G++ +AL +V  +   
Sbjct: 809  SYLKCLCEVGKLLDARRCTEALCKLGFTI-PLSYSLYIRALCRAGRLEEALALVDEVGPE 867

Query: 359  HV-VDGNIYGSIINGYLRRNEVSKAVDMFRSMK 454
             V +D  IYGS+++G LRR  + +A++   SMK
Sbjct: 868  RVTLDQYIYGSLVHGLLRRGRLKEALEKVDSMK 900



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 2/152 (1%)
 Frame = +2

Query: 5    DIAMEFYKEMVCKNIEVDMNLYKVLMNCLSRSGNILDVRLVGEDMMNVS-QVPQQKVYSC 181
            D A++ + EM+      D  L +  + CL   G +LD R   E +  +   +P    YS 
Sbjct: 786  DEAIKTFLEMIRAGYVPDKELVESYLKCLCEVGKLLDARRCTEALCKLGFTIPLS--YSL 843

Query: 182  ILRSFCVGXXXXXXXXXXXXXXXXNIMLDPENFEVLVKGLCRDGKISDALEIVSIMKQNH 361
             +R+ C                   + LD   +  LV GL R G++ +ALE V  MKQ  
Sbjct: 844  YIRALCRAGRLEEALALVDEVGPERVTLDQYIYGSLVHGLLRRGRLKEALEKVDSMKQIG 903

Query: 362  V-VDGNIYGSIINGYLRRNEVSKAVDMFRSMK 454
            +    ++Y S+I  + +  ++ KA++ F+ MK
Sbjct: 904  IHPTVHVYTSLIVHFFKEKQMRKALETFQKMK 935


>ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536657|gb|EEF38299.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1072

 Score =  144 bits (362), Expect = 1e-32
 Identities = 68/151 (45%), Positives = 104/151 (68%)
 Frame = +2

Query: 2   GDIAMEFYKEMVCKNIEVDMNLYKVLMNCLSRSGNILDVRLVGEDMMNVSQVPQQKVYSC 181
           G++A+ FYKEMV K++ +D++LYK+L+  +++SG++  V LV  DM  +SQ+P+  V  C
Sbjct: 296 GEVALAFYKEMVQKDMRLDLSLYKILLISMAKSGDVGAVHLVANDMSRLSQIPEHDVNVC 355

Query: 182 ILRSFCVGXXXXXXXXXXXXXXXXNIMLDPENFEVLVKGLCRDGKISDALEIVSIMKQNH 361
           IL+SFCV                 +I++D E    LVKGLCR  +I+DA+EIV IMK+ +
Sbjct: 356 ILKSFCVAGKIREALELIRDLKNKDILIDYEYLGTLVKGLCRGDRITDAVEIVEIMKKRN 415

Query: 362 VVDGNIYGSIINGYLRRNEVSKAVDMFRSMK 454
           ++D  IYG IINGYLR+ ++SKA+++F+ MK
Sbjct: 416 LIDAKIYGIIINGYLRKKDLSKAIELFQRMK 446