BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011921
         (3536 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein...  1534   0.0  
ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein...  1456   0.0  
ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein...  1455   0.0  
ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein...  1441   0.0  
ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa]...  1427   0.0  

>ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Vitis
            vinifera] gi|297738576|emb|CBI27821.3| unnamed protein
            product [Vitis vinifera]
          Length = 1091

 Score = 1534 bits (3971), Expect = 0.0
 Identities = 787/1093 (72%), Positives = 897/1093 (82%), Gaps = 14/1093 (1%)
 Frame = +2

Query: 50   MGCVYIPVQHSDEEVRVVLNQLPLDANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQ 229
            M  VYIPVQ+S+EEVRV L+QLP DA+DILDILKAEQA LDLWLIIAREYFKQG ++QF+
Sbjct: 1    MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFR 60

Query: 230  QILEEGSSPEIDEYYADVKYDRIAILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKA 409
            QILEEGSSPEIDEYYADV+Y+RIAILNALGAY+SYLGK E+K  +K++HFI AT+YYNKA
Sbjct: 61   QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120

Query: 410  SRIDIHEPSTWVGKGQLLLAKGDLEQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSD 589
            SRID+HE STWVGKGQLLLAKGD+EQA  AFKIVLDG++DNVPALLGQACV+F+RGRYSD
Sbjct: 121  SRIDMHEASTWVGKGQLLLAKGDVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180

Query: 590  SLELYKRALKVYPSCPGAVRLGIGLCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLM 769
            SL+LYKRAL+VYP CP AVR+GIGLC YKLGQF+KAR+AFQRVLQLDP+NVEALVALG+M
Sbjct: 181  SLDLYKRALQVYPDCPAAVRVGIGLCCYKLGQFEKARKAFQRVLQLDPENVEALVALGIM 240

Query: 770  DLQTNEGDEIQKGMEKMQAAFEIYPYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEP 949
            DL TN+   I+KGMEKMQ AFEIYPYCA+AL YLANHFFFTG+H  VE+LT+TALAV+  
Sbjct: 241  DLHTNDASGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300

Query: 950  GLQKSHSFYNLARSYHSKGDYEKAGFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRG 1129
            G  KSHS+YNLARSYHSKGDYEKAG YYMASVKE ++PHDFVLPYYGLGQVQLKLGDFR 
Sbjct: 301  GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKESNKPHDFVLPYYGLGQVQLKLGDFRS 360

Query: 1130 SLSNFEKVLEVYPENGESLRVVGHIYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELL 1309
            SLSNFEKVLEVYPEN E+L+ +GHIYVQLGQTEKA + LRKAT+IDPRDAQAFL+LGELL
Sbjct: 361  SLSNFEKVLEVYPENCEALKALGHIYVQLGQTEKAQEYLRKATKIDPRDAQAFLDLGELL 420

Query: 1310 ISSDAGAALDAFKTARSLLKKSGGKAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVW 1489
            I+SD GAALDAFKTAR LLKK G + PIELLNNIGVL+F++G+FELA+QTFKEA+G+G+W
Sbjct: 421  ITSDTGAALDAFKTARGLLKKGGEEVPIELLNNIGVLYFERGEFELAEQTFKEAVGDGIW 480

Query: 1490 LDLVDGKFCSSAVDS----DQFCDMQLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHD 1657
            L  +D K  S A D+      F DMQLF +L+E G  VEL W+KVT LFN ARLLEQL++
Sbjct: 481  LSFIDDKAYSYANDARTSMHHFKDMQLFHQLEEDGHFVELPWNKVTVLFNLARLLEQLNN 540

Query: 1658 AEKASILYRLILFKYPDYQDAYLRLAAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLG 1837
             + ASILYRLILFK+PDY DAYLRLAAIAK+RNNIQLSIEL+G+A+KVN+K P++L MLG
Sbjct: 541  TKTASILYRLILFKFPDYIDAYLRLAAIAKARNNIQLSIELVGDALKVNDKGPNSLCMLG 600

Query: 1838 ALELKNDDWLKAKETFRAAREATDGKDSYSALSLGNWNYFAAARSEKKGAKLEATHLEKA 2017
             LELKNDDW+KAKETFR+A +ATDGKDSY+ LSLGNWNYFAA RSEK+  KLEATHLEKA
Sbjct: 601  DLELKNDDWVKAKETFRSASDATDGKDSYATLSLGNWNYFAAIRSEKRAPKLEATHLEKA 660

Query: 2018 KELYTKVLVQHPANLYAANGAAVVLAEKGQFDVSKDIFTQVQEAASGSIFVQMPDVWINL 2197
            KELYT+VLVQH ANLYAANGA VVLAEKG FDVSKDIFTQVQEAASGS+FVQMPDVWINL
Sbjct: 661  KELYTRVLVQHNANLYAANGAGVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINL 720

Query: 2198 AHVYFAQGQFTSAVKMYQNCLRKFYYNTDTQVLLYLARTHYEAEQWQDCKKTLLRAIHLA 2377
            AHVYFAQG F  AVKMYQNCLRKFYYNTD+QVLLYLARTHYEAEQWQDCKKTLLRAIHLA
Sbjct: 721  AHVYFAQGNFALAVKMYQNCLRKFYYNTDSQVLLYLARTHYEAEQWQDCKKTLLRAIHLA 780

Query: 2378 PSNYTLRFDAGVALQKFSASTLQKTKKTADEVRSTVAELKNAVRVFSQLSAASNHHIHGF 2557
            PSNYTLRFDAGVA+QKFSASTLQKTK+TADEVRSTVAELKNAVR+FSQLSAASN H HGF
Sbjct: 781  PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELKNAVRIFSQLSAASNLHFHGF 840

Query: 2558 DEKKIETHVGYCKHLLDAAKVHCXXXXXXXXXXXXXXXVARQVXXXXXXXXXXXXXXKYQ 2737
            DEKKIETHVGYCKHLL+AAKVHC               +ARQV              K+Q
Sbjct: 841  DEKKIETHVGYCKHLLEAAKVHCEAAEREELQNRHRVELARQVNLAEEARRKAEEQRKFQ 900

Query: 2738 LEKRKQEDEIXXXXXXXXXXXXXXXXXXSSTPASKRKDRSHADDEEGGHSENXXXXXXXX 2917
            LE+RKQEDE+                  S+   SKRK+RS  DD+EGG SE         
Sbjct: 901  LERRKQEDELKRVMQQEQHFERVKEQWKSNNLNSKRKERSQIDDDEGGQSER-RRRKGGK 959

Query: 2918 XXXXXXPQYEMDEVEPNTMYE---------XXXXXXXXXQMNRQENDGEENTQDLLAAAG 3070
                   +Y+ +E   + M +                  QMN Q++DGE++ QDLLAAAG
Sbjct: 960  RRKKDKSRYDSEEARADAMDDQDEMEDEDTNMNHRESTNQMNNQDDDGEDDAQDLLAAAG 1019

Query: 3071 LEDSDVEDDMNDPPSTKYRRKRALSDSDEDEPSDRKVESGQNRESLAE-PESDGEFREEK 3247
            LEDSD EDDM   PS+  RRKRA S+SDEDEP D++ ES   RE+ AE  ESDGE +++ 
Sbjct: 1020 LEDSDAEDDMAG-PSSGNRRKRAWSESDEDEPQDQRPESSPVRENSAEVQESDGEIKDDN 1078

Query: 3248 EELHRDTFEEDED 3286
            ++ + D  E+DED
Sbjct: 1079 DKPNGDAAEDDED 1091


>ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
            max]
          Length = 1088

 Score = 1456 bits (3770), Expect = 0.0
 Identities = 750/1089 (68%), Positives = 872/1089 (80%), Gaps = 11/1089 (1%)
 Frame = +2

Query: 50   MGCVYIPVQHSDEEVRVVLNQLPLDANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQ 229
            M  VYIPVQ+S+EEVRV L+QLP DA+DILDILKAEQA LDLWLIIAREYFKQG ++Q++
Sbjct: 1    MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQYR 60

Query: 230  QILEEGSSPEIDEYYADVKYDRIAILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKA 409
            QILEEGSSPEIDEYYADV+Y+RIAILNALGAY+SYLGK E+K  +K++HFI AT+YYNKA
Sbjct: 61   QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120

Query: 410  SRIDIHEPSTWVGKGQLLLAKGDLEQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSD 589
            SRID+HEPSTWVGKGQLLLAKG++EQAS AFKIVLDG+ DNVPALLGQACV+F+RGR+SD
Sbjct: 121  SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDHDNVPALLGQACVEFNRGRFSD 180

Query: 590  SLELYKRALKVYPSCPGAVRLGIGLCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLM 769
            SLELYKR L+VYP+CP AVRLGIGLCRYKLGQF+KA+QAF+RVLQLDP+NVE+L+AL +M
Sbjct: 181  SLELYKRVLQVYPNCPAAVRLGIGLCRYKLGQFEKAQQAFERVLQLDPENVESLIALAIM 240

Query: 770  DLQTNEGDEIQKGMEKMQAAFEIYPYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEP 949
            DL+TNE   I+ GM KMQ AFEIYPYCA+AL YLANHFFFTG+H  VE+LT+TALAV+  
Sbjct: 241  DLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300

Query: 950  GLQKSHSFYNLARSYHSKGDYEKAGFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRG 1129
            G  KSHS+YNLARSYHSKGDY+KAG YYMASVKE+++PH+FV PYYGLGQVQ+KLGDF+ 
Sbjct: 301  GPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKS 360

Query: 1130 SLSNFEKVLEVYPENGESLRVVGHIYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELL 1309
            +LSNFEKVLEVYP+N E+L+ +GHIYVQLGQT+K  D +RKAT+IDPRDAQAFLELGELL
Sbjct: 361  ALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELL 420

Query: 1310 ISSDAGAALDAFKTARSLLKKSGGKAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVW 1489
            I SD GAALDAFKTA +L KK G + PIELLNNIGVL F++G+FELA+QTFKEALG+GVW
Sbjct: 421  ILSDTGAALDAFKTAHTLFKKGGQEVPIELLNNIGVLQFERGEFELARQTFKEALGDGVW 480

Query: 1490 LDLVDGKFCSS---AVDSDQFCDMQLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHDA 1660
            L  ++ +  SS   A  + QF DMQLF  L+  G  VE+ WDKVT LFN ARLLEQL+D+
Sbjct: 481  LSFINEENKSSIDAATSTLQFKDMQLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLYDS 540

Query: 1661 EKASILYRLILFKYPDYQDAYLRLAAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLGA 1840
              ASI YRLILFKYPDY DAYLRLAAIAK+RNNI LSIEL+ +A+KVN KCP+ALSMLG 
Sbjct: 541  GTASIFYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLGE 600

Query: 1841 LELKNDDWLKAKETFRAAREATDGKDSYSALSLGNWNYFAAARSEKKGAKLEATHLEKAK 2020
            LELKNDDW+KAKET R A +ATDGKDSY+ LSLGNWNYFAA R+EK+  KLEATHLEKAK
Sbjct: 601  LELKNDDWVKAKETLRTASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAK 660

Query: 2021 ELYTKVLVQHPANLYAANGAAVVLAEKGQFDVSKDIFTQVQEAASGSIFVQMPDVWINLA 2200
            EL T+VL+QH +NLYAANGAAVVLAEKG FDVSKDIFTQVQEAASGS+FVQMPDVWINLA
Sbjct: 661  ELCTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLA 720

Query: 2201 HVYFAQGQFTSAVKMYQNCLRKFYYNTDTQVLLYLARTHYEAEQWQDCKKTLLRAIHLAP 2380
            HVYFAQG FT AVKMYQNCLRKFY+NTD+Q+LLYLARTHYEAEQWQDC KTLLRAIHLAP
Sbjct: 721  HVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAP 780

Query: 2381 SNYTLRFDAGVALQKFSASTLQKTKKTADEVRSTVAELKNAVRVFSQLSAASNHHIHGFD 2560
            SNYTLRFDAGVA+QKFSASTLQK K+TADEVR+TVAEL+NAVRVFSQLSAASN HIHGFD
Sbjct: 781  SNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFD 840

Query: 2561 EKKIETHVGYCKHLLDAAKVHCXXXXXXXXXXXXXXXVARQVXXXXXXXXXXXXXXKYQL 2740
            EKKI+THVGYC HLL AAKVH                +ARQV              K+Q+
Sbjct: 841  EKKIDTHVGYCNHLLSAAKVHLEAAEHEEQQVRQRQELARQVALAEEARRKAEEQRKFQM 900

Query: 2741 EKRKQEDEIXXXXXXXXXXXXXXXXXXSSTPASKRKDRSHADDEEGGHSENXXXXXXXXX 2920
            E+RKQEDE+                  SS+  SKR++RS  DDEEGG  E          
Sbjct: 901  ERRKQEDELKRVQKQEEHFRRVKEQWKSSS-HSKRRERS--DDEEGGTGEKKRKKGGKRR 957

Query: 2921 XXXXXP--QYEMDEVEPNTMYEXXXXXXXXXQMNRQE------NDGEENTQDLLAAAGLE 3076
                    +Y+ +E E + M E            R+E      +D EEN Q LLAAAGLE
Sbjct: 958  KKDKHSKLRYDAEEPEDDLMDEQGMEDEEADINYREEPQTQMNDDAEENAQGLLAAAGLE 1017

Query: 3077 DSDVEDDMNDPPSTKYRRKRALSDSDEDEPSDRKVESGQNRESLAEPESDGEFREEKEEL 3256
            DSD +++   P S+  RR++ALS+SD+DEP  ++  S   + S     SDGE R+  +  
Sbjct: 1018 DSDADEETAAPSSSIARRRQALSESDDDEPLLQRQSSPVRQNSADMQLSDGEIRDGDKTN 1077

Query: 3257 HRDTFEEDE 3283
              D  +E++
Sbjct: 1078 GDDGNDEEK 1086


>ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
            max]
          Length = 1086

 Score = 1455 bits (3766), Expect = 0.0
 Identities = 751/1090 (68%), Positives = 873/1090 (80%), Gaps = 12/1090 (1%)
 Frame = +2

Query: 50   MGCVYIPVQHSDEEVRVVLNQLPLDANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQ 229
            M  VYIPVQ+S+EEVRV L+QLP DA+DILDILKAEQA LDLWL+IAREYFKQG ++QF+
Sbjct: 1    MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLVIAREYFKQGKIDQFR 60

Query: 230  QILEEGSSPEIDEYYADVKYDRIAILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKA 409
            QILEEGSSPEID+YYADV+Y+RIAILNALGAY+SYLGK E+K  +K++HFI AT+YYNKA
Sbjct: 61   QILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120

Query: 410  SRIDIHEPSTWVGKGQLLLAKGDLEQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSD 589
            SRID+HEPSTWVGKGQLLLAKG++EQAS AFKIVLDG++DNVPALLGQACV+F+RGRYSD
Sbjct: 121  SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180

Query: 590  SLELYKRALKVYPSCPGAVRLGIGLCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLM 769
            SLELYKRAL VYP CP AVRLGIGLCRYKLGQF+KA+QAF+R   LDP+NVEALVAL +M
Sbjct: 181  SLELYKRALLVYPDCPAAVRLGIGLCRYKLGQFEKAQQAFER---LDPENVEALVALAIM 237

Query: 770  DLQTNEGDEIQKGMEKMQAAFEIYPYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEP 949
            DL+TNE   I+ GM KMQ AFEIYPYCA+AL YLANHFFFTG+H  VE+LT+TALAV+  
Sbjct: 238  DLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 297

Query: 950  GLQKSHSFYNLARSYHSKGDYEKAGFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRG 1129
            G  KSHS+YNLARSYHSKGDY+KAG YYMASVKE+++PH+FV PYYGLGQVQ+KLGDF+ 
Sbjct: 298  GPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKS 357

Query: 1130 SLSNFEKVLEVYPENGESLRVVGHIYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELL 1309
            +LSNFEKVLEVYP+N E+L+ +GHIYVQLGQT+K  D +RKAT+IDPRDAQAFLELGELL
Sbjct: 358  ALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELL 417

Query: 1310 ISSDAGAALDAFKTARSLLKKSGGKAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVW 1489
            I SD GAALDAFKTAR+L KK G + PIELLNNIGVL F++G+FELA+QTFKEALG+GVW
Sbjct: 418  ILSDTGAALDAFKTARTLFKKGGQEVPIELLNNIGVLQFERGEFELAQQTFKEALGDGVW 477

Query: 1490 LDLVDGKFCSS---AVDSDQFCDMQLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHDA 1660
            L  ++ +  SS   A  + QF DM+LF  L+  G  VE+ WDKVT LFN ARLLEQL+D+
Sbjct: 478  LSFINEEKKSSIDAATSTLQFKDMKLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLNDS 537

Query: 1661 EKASILYRLILFKYPDYQDAYLRLAAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLGA 1840
              ASILYRL+LFKYPDY DAYLRLAAIAK+RNNI LSIEL+ +A+KVN KCP+ALSMLG 
Sbjct: 538  GTASILYRLVLFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLGE 597

Query: 1841 LELKNDDWLKAKETFRAAREATDGKDSYSALSLGNWNYFAAARSEKKGAKLEATHLEKAK 2020
            LELKNDDW+KAKET RAA +AT+GKDSY++LSLGNWNYFAA R+EK+  KLEATHLEKAK
Sbjct: 598  LELKNDDWVKAKETLRAASDATEGKDSYASLSLGNWNYFAAVRNEKRNPKLEATHLEKAK 657

Query: 2021 ELYTKVLVQHPANLYAANGAAVVLAEKGQFDVSKDIFTQVQEAASGSIFVQMPDVWINLA 2200
            ELYT+VL+QH +NLYAANGAAVVLAEKG FDVSKDIFTQVQEAASGS+FVQMPDVWINLA
Sbjct: 658  ELYTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLA 717

Query: 2201 HVYFAQGQFTSAVKMYQNCLRKFYYNTDTQVLLYLARTHYEAEQWQDCKKTLLRAIHLAP 2380
            HVYFAQG FT AVKMYQNCLRKFY+NTD+Q+LLYLARTHYEAEQWQDC KTLLRAIHLAP
Sbjct: 718  HVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAP 777

Query: 2381 SNYTLRFDAGVALQKFSASTLQKTKKTADEVRSTVAELKNAVRVFSQLSAASNHHIHGFD 2560
            SNYTLRFDAGVA+QKFSASTLQK K+TADEVR+TVAEL+NAVRVFSQLSAASN HIHGFD
Sbjct: 778  SNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFD 837

Query: 2561 EKKIETHVGYCKHLLDAAKVHCXXXXXXXXXXXXXXXVARQVXXXXXXXXXXXXXXKYQL 2740
            EKKI+THVGYC HLL AAKVH                +ARQV              K+Q+
Sbjct: 838  EKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVAFAEEARRKAEEQRKFQM 897

Query: 2741 EKRKQEDEIXXXXXXXXXXXXXXXXXXSSTPASKRKDRSHADDEEG---GHSENXXXXXX 2911
            E+RKQEDE+                  SS+  SKR++RS  DDEEG   G  +       
Sbjct: 898  ERRKQEDELKRVQQQEEHFRRVKEQWKSSS-HSKRRERS--DDEEGGGTGEKKRKKGGKR 954

Query: 2912 XXXXXXXXPQYEMDEVEPNTMYEXXXXXXXXXQMNRQE------NDGEENTQDLLAAAGL 3073
                     +Y+ +E E + M E            R+E      +D EEN Q LLAAAGL
Sbjct: 955  RKKDKHSKSRYDTEEPENDMMDEQEMEDEEADINYREEPQTQMNDDAEENAQGLLAAAGL 1014

Query: 3074 EDSDVEDDMNDPPSTKYRRKRALSDSDEDEPSDRKVESGQNRESLAEPESDGEFREEKEE 3253
            EDSD +++   P S+  RR++ALS+SD+DEP  ++  S     S     SDGE R+  + 
Sbjct: 1015 EDSDADEEAPAPSSSIARRRQALSESDDDEPLIQRQSSPARENSADMQLSDGEIRDGDKT 1074

Query: 3254 LHRDTFEEDE 3283
               D  EE++
Sbjct: 1075 NGDDGSEEEK 1084


>ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Cucumis
            sativus]
          Length = 1074

 Score = 1441 bits (3731), Expect = 0.0
 Identities = 741/1078 (68%), Positives = 858/1078 (79%), Gaps = 15/1078 (1%)
 Frame = +2

Query: 50   MGCVYIPVQHSDEEVRVVLNQLPLDANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQ 229
            M CVYIPVQ+S+EEVRV L+QLP DA+DILDILKAEQA LDLWLIIAREYFKQG +EQF+
Sbjct: 1    MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60

Query: 230  QILEEGSSPEIDEYYADVKYDRIAILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKA 409
            QILEEGSSPEIDEYYADV+Y+RIAILNALGAY+SYLGK E+K  +K++HFI AT+YYNKA
Sbjct: 61   QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120

Query: 410  SRIDIHEPSTWVGKGQLLLAKGDLEQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSD 589
            SRID+HEPSTWVGKGQLLL KG++EQA  AFKIVLDG++DNVPALLGQACV+F+RG YS+
Sbjct: 121  SRIDMHEPSTWVGKGQLLLTKGEVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGHYSE 180

Query: 590  SLELYKRALKVYPSCPGAVRLGIGLCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLM 769
            SLELYKRAL+VYP CP AVRLGIGLCRY+L Q+ KA+QAF+R   LDP+NVEALV L ++
Sbjct: 181  SLELYKRALQVYPDCPAAVRLGIGLCRYQLKQYGKAQQAFER---LDPENVEALVGLAII 237

Query: 770  DLQTNEGDEIQKGMEKMQAAFEIYPYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEP 949
            DL TNE   I+ GMEKMQ AFEIYP+CA+AL YLANHFFFTG+H  VE+LT+TALA++  
Sbjct: 238  DLNTNEAGRIRNGMEKMQRAFEIYPFCAMALNYLANHFFFTGQHFLVEQLTETALAITNH 297

Query: 950  GLQKSHSFYNLARSYHSKGDYEKAGFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRG 1129
            G  KSHSFYNLARSYHSKGDYEKAG YYMAS KE ++P +FV PYYGLGQVQLK+GD R 
Sbjct: 298  GPTKSHSFYNLARSYHSKGDYEKAGLYYMASAKEANKPREFVFPYYGLGQVQLKMGDLRS 357

Query: 1130 SLSNFEKVLEVYPENGESLRVVGHIYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELL 1309
            +LSNFEKVLEVYP+N E+L+V+GHIYVQLGQ EKA + LRKAT+IDPRDAQAFL+LGELL
Sbjct: 358  ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQAEKAQESLRKATKIDPRDAQAFLDLGELL 417

Query: 1310 ISSDAGAALDAFKTARSLLKKSGGKAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVW 1489
            IS+D  AALDAFKTA  LLKK G + PIE+LNN+GVLHF++ +FELA++ FKEALG+G+W
Sbjct: 418  ISTDESAALDAFKTASILLKKGGQEVPIEVLNNLGVLHFEREEFELAERIFKEALGDGIW 477

Query: 1490 LDLVDGKFCSSAVDSD----QFCDMQLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHD 1657
            LD +DGK    A+++     Q+ D++LF +L+  G  + L W KVT+LFN ARLLEQLH 
Sbjct: 478  LDFIDGKVRCPAIEASASVLQYKDVELFYQLEREGRAIVLPWKKVTSLFNLARLLEQLHR 537

Query: 1658 AEKASILYRLILFKYPDYQDAYLRLAAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLG 1837
             E +S+LYRLILFKYPDY DAYLRLA+IAK+RN +QLSIEL+ +A+KVN+KC +ALSMLG
Sbjct: 538  IEVSSVLYRLILFKYPDYVDAYLRLASIAKARNYVQLSIELVNDALKVNDKCSNALSMLG 597

Query: 1838 ALELKNDDWLKAKETFRAAREATDGKDSYSALSLGNWNYFAAARSEKKGAKLEATHLEKA 2017
             LELKNDDW++AKETFRAA EATDGKDSY+ LSLGNWNYFAA R+EK+  KLEATHLEK+
Sbjct: 598  ELELKNDDWVRAKETFRAAGEATDGKDSYATLSLGNWNYFAALRNEKRNPKLEATHLEKS 657

Query: 2018 KELYTKVLVQHPANLYAANGAAVVLAEKGQFDVSKDIFTQVQEAASGSIFVQMPDVWINL 2197
            KELYT+VLVQHPANLYAANGA V+LAEKGQFDVSKDIFTQVQEAASG+IFVQMPDVWINL
Sbjct: 658  KELYTRVLVQHPANLYAANGAGVILAEKGQFDVSKDIFTQVQEAASGNIFVQMPDVWINL 717

Query: 2198 AHVYFAQGQFTSAVKMYQNCLRKFYYNTDTQVLLYLARTHYEAEQWQDCKKTLLRAIHLA 2377
            AHVYFAQG F+ AVKMYQNCLRKFYYNTD Q+LLYLART+YEAEQWQDCKKTLLRAIHLA
Sbjct: 718  AHVYFAQGNFSLAVKMYQNCLRKFYYNTDYQILLYLARTYYEAEQWQDCKKTLLRAIHLA 777

Query: 2378 PSNYTLRFDAGVALQKFSASTLQKTKKTADEVRSTVAELKNAVRVFSQLSAASNHHIHGF 2557
            PSNYTLRFDAGVA+QKFSASTLQKTK+TADEVRSTVAEL+NAVRVFSQLSAASN H HGF
Sbjct: 778  PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELENAVRVFSQLSAASNLHFHGF 837

Query: 2558 DEKKIETHVGYCKHLLDAAKVHCXXXXXXXXXXXXXXXVARQVXXXXXXXXXXXXXXKYQ 2737
            DEKKI+THVGYCKHLL+AA VH                +ARQV              K+Q
Sbjct: 838  DEKKIDTHVGYCKHLLEAAGVHLKAAEHEEQQIRQRQELARQVALAEDARRKADEQRKFQ 897

Query: 2738 LEKRKQEDEIXXXXXXXXXXXXXXXXXXSSTPASKRKDRSHADDEEGGHSE--NXXXXXX 2911
            LE+RK EDE                   S TPA KR++RS  DD+E G+SE         
Sbjct: 898  LERRKLEDEEKRMMQQEQHFKRVKEQWKSITPA-KRRERSEIDDDEAGNSEKRRRKGGKR 956

Query: 2912 XXXXXXXXPQYEMDEVEPNTMYE--------XXXXXXXXXQMNRQENDGEENTQDLLAAA 3067
                      YE +E + + M +                 Q+N Q +D E N QD LA A
Sbjct: 957  RKKDRKGKSHYETEEADNDMMDDQELYNEDNNISYRESRSQVNDQGDDFEGNDQDALAEA 1016

Query: 3068 GLEDSDVEDDMNDPPSTKYRRKRALSDSDEDEPSDRKVESGQNRESLAEPE-SDGEFR 3238
            GLEDSD ED+   P S   RR+   SDS+EDEP D + ES   RE+ A  E SDGE R
Sbjct: 1017 GLEDSDAEDEAGAPSSNAARRRATWSDSEEDEPIDTQRESRLQRENSAGLEDSDGEIR 1074


>ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa]
            gi|222833309|gb|EEE71786.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 1056

 Score = 1427 bits (3693), Expect = 0.0
 Identities = 736/1059 (69%), Positives = 849/1059 (80%), Gaps = 13/1059 (1%)
 Frame = +2

Query: 50   MGCVYIPVQHSDEEVRVVLNQLPLDANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQ 229
            M  VYIPVQ+S+EEVRV L+QLP DA+DILDILKAEQA LDLWLIIAREYFKQG ++QF+
Sbjct: 1    MAFVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLDQFR 60

Query: 230  QILEEGSSPEIDEYYADVKYDRIAILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKA 409
            QILEEGSS EIDEYYADV+Y+RIAILNALGAY+SYLGK E+K  +K+++FI ATK+YNKA
Sbjct: 61   QILEEGSSHEIDEYYADVRYERIAILNALGAYYSYLGKVETKQREKEEYFIQATKHYNKA 120

Query: 410  SRIDIHEPSTWVGKGQLLLAKGDLEQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSD 589
            SRID+HEPSTWVGKGQLLLAKG++EQAS AF+IVL+G++DNV ALLGQACV++SRG Y +
Sbjct: 121  SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFRIVLEGDRDNVSALLGQACVEYSRGHYGE 180

Query: 590  SLELYKRALKVYPSCPGAVRLGIGLCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLM 769
            SL L+KRAL+VYP CPGAVRLGIG C YKLG   KA  AFQR   LDP+NVEALV+L ++
Sbjct: 181  SLTLFKRALQVYPDCPGAVRLGIGHCHYKLGHVGKACLAFQR---LDPENVEALVSLAIL 237

Query: 770  DLQTNEGDEIQKGMEKMQAAFEIYPYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEP 949
            DLQTNE   I+KGMEKMQ AFEIYPYCA+AL YLANHFFFTG+H  VE+LT+TALAV+  
Sbjct: 238  DLQTNEAAAIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 297

Query: 950  GLQKSHSFYNLARSYHSKGDYEKAGFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRG 1129
            G  KSHS+YNLARSYHSKGDYE A  YY ASVKEI++P +FV PYYGLGQVQLKLG+ + 
Sbjct: 298  GPTKSHSYYNLARSYHSKGDYETASRYYWASVKEINKPSEFVFPYYGLGQVQLKLGEIKN 357

Query: 1130 SLSNFEKVLEVYPENGESLRVVGHIYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELL 1309
            +LSNFEKVLEVYP+N E+L+V+GHIYVQLGQTEKA + LRKA +IDPRDAQAFL+LGELL
Sbjct: 358  ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQTEKAQEFLRKAAKIDPRDAQAFLDLGELL 417

Query: 1310 ISSDAGAALDAFKTARSLLKKSGGKAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVW 1489
            IS+D GAALDAFKTARSLLKK G + PIE+LNNI V+HF++ + ELA Q FKEALG+G+W
Sbjct: 418  ISTDTGAALDAFKTARSLLKKGGEEVPIEVLNNIAVIHFEREELELALQNFKEALGDGIW 477

Query: 1490 LDLVDGKFCSSAVDSD----QFCDMQLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHD 1657
            L  ++GK  +  VD+     Q+ DMQ+F+RL+E G  VEL W+KVTTLFN ARLLEQLH+
Sbjct: 478  LTFLEGKANTYEVDATSSLLQYKDMQIFRRLEEEGHSVELSWNKVTTLFNLARLLEQLHN 537

Query: 1658 AEKASILYRLILFKYPDYQDAYLRLAAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLG 1837
             E AS LYRLILFKYPDY DAYLRLAAIAK+RNN+ LSIEL+ EA+ VN+KCP+ALSMLG
Sbjct: 538  TETASTLYRLILFKYPDYVDAYLRLAAIAKARNNLPLSIELVNEALTVNDKCPNALSMLG 597

Query: 1838 ALELKNDDWLKAKETFRAAREATDGKDSYSALSLGNWNYFAAARSEKKGAKLEATHLEKA 2017
             LELKNDDW+KAKETFRAA EATDGKDSY+ LSLGNWNYFAA R+EK+  KLEATHLEKA
Sbjct: 598  DLELKNDDWVKAKETFRAASEATDGKDSYATLSLGNWNYFAAIRNEKRNPKLEATHLEKA 657

Query: 2018 KELYTKVLVQHPANLYAANGAAVVLAEKGQFDVSKDIFTQVQEAASGSIFVQMPDVWINL 2197
            KELYT+VLVQH ANLYAANGA VVLAEKG FDVSKD+FTQVQEAASGSIFVQMPDVWINL
Sbjct: 658  KELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDLFTQVQEAASGSIFVQMPDVWINL 717

Query: 2198 AHVYFAQGQFTSAVKMYQNCLRKFYYNTDTQVLLYLARTHYEAEQWQDCKKTLLRAIHLA 2377
            AHVYFAQG F  AVKMYQNCL+KF+YNTD+Q+LLYLARTHYEAEQWQDCK+TLLRAIHL 
Sbjct: 718  AHVYFAQGNFALAVKMYQNCLQKFFYNTDSQILLYLARTHYEAEQWQDCKRTLLRAIHLT 777

Query: 2378 PSNYTLRFDAGVALQKFSASTLQKTKKTADEVRSTVAELKNAVRVFSQLSAASNHHIHGF 2557
            PSNYTLRFDAGVA+QKFSASTLQKTK+T DEVRSTV EL+NAVR+FSQLSAASN + +GF
Sbjct: 778  PSNYTLRFDAGVAMQKFSASTLQKTKRTVDEVRSTVDELENAVRLFSQLSAASNLYFNGF 837

Query: 2558 DEKKIETHVGYCKHLLDAAKVHCXXXXXXXXXXXXXXXVARQVXXXXXXXXXXXXXXKYQ 2737
            DEKKI THV YCKHLL+AA VH                +ARQ+              K+Q
Sbjct: 838  DEKKINTHVEYCKHLLEAAIVHREAAEREEQQNRQRLDLARQMALAEEARRKAEEQRKFQ 897

Query: 2738 LEKRKQEDEIXXXXXXXXXXXXXXXXXXSSTPASKRKDRSHADDEEGGHSE--NXXXXXX 2911
            LE+RKQEDE+                  SST ASKR+DR+  DD EGGH E         
Sbjct: 898  LERRKQEDELKRVRQQEEHFERVKEQWKSSTSASKRRDRADIDDGEGGHGEKRRRKGGKR 957

Query: 2912 XXXXXXXXPQYEMDEV-------EPNTMYEXXXXXXXXXQMNRQENDGEENTQDLLAAAG 3070
                     +YEM+E        EP              QMN Q+++ EEN QD+LAAAG
Sbjct: 958  RKKEKSSRSRYEMEEADMMDDHDEPEDDDANVNFREPGYQMNDQDDNAEENAQDVLAAAG 1017

Query: 3071 LEDSDVEDDMNDPPSTKYRRKRALSDSDEDEPSDRKVES 3187
            LEDSD +DD    PS+  RRKRA S+SDEDE S+RK +S
Sbjct: 1018 LEDSDADDDA-AAPSSAGRRKRAWSESDEDEISERKPQS 1055