BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011853
         (333 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...    57   3e-08
ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcript...    58   7e-07
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]            58   7e-07
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...    51   1e-06
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    57   1e-06

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score = 57.4 bits (137), Expect(2) = 3e-08
 Identities = 28/55 (50%), Positives = 34/55 (61%)
 Frame = -1

Query: 321 AKHLSHAGRLQLIQSVLSSFHVYWGRTFVPPISVLDQVTKICNKFLWCGPEMQQK 157
           AK LS+AGRLQLI+S+LSS   YW   F     V+  V K+C KFLW G   + K
Sbjct: 787 AKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEETK 841



 Score = 25.0 bits (53), Expect(2) = 3e-08
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 121 RGGSPLHNGLNLWNQAAYSGLVMKISNKQESLW 23
           RGG  + N +  WN+AA   L+  I  K++ LW
Sbjct: 856 RGGWNVIN-MKYWNRAAMLKLLWAIEFKRDKLW 887


>ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcriptase)-related protein
           [Arabidopsis thaliana] gi|332643359|gb|AEE76880.1|
           RNA-directed DNA polymerase (reverse
           transcriptase)-related protein [Arabidopsis thaliana]
          Length = 746

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 26/55 (47%), Positives = 35/55 (63%)
 Frame = -1

Query: 321 AKHLSHAGRLQLIQSVLSSFHVYWGRTFVPPISVLDQVTKICNKFLWCGPEMQQK 157
           A+HLS AGRLQLI SV+ S   +W   F  P + + ++  IC+ FLW GPE+  K
Sbjct: 58  ARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTK 112


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 26/55 (47%), Positives = 35/55 (63%)
 Frame = -1

Query: 321 AKHLSHAGRLQLIQSVLSSFHVYWGRTFVPPISVLDQVTKICNKFLWCGPEMQQK 157
           A+HLS AGRLQLI SV+ S   +W   F  P + + ++  IC+ FLW GPE+  K
Sbjct: 58  ARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTK 112


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score = 50.8 bits (120), Expect(2) = 1e-06
 Identities = 22/46 (47%), Positives = 30/46 (65%)
 Frame = -1

Query: 312 LSHAGRLQLIQSVLSSFHVYWGRTFVPPISVLDQVTKICNKFLWCG 175
           LS+AGRLQL++++L S   YWG+ F  P  ++  V   C KFLW G
Sbjct: 793 LSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRKFLWTG 838



 Score = 26.6 bits (57), Expect(2) = 1e-06
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 88  LWNQAAYSGLVMKISNKQESLW 23
           LWN+AA   L+  I+ KQ+ LW
Sbjct: 869 LWNKAAILKLLWAITFKQDKLW 890


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 26/60 (43%), Positives = 37/60 (61%)
 Frame = -1

Query: 321 AKHLSHAGRLQLIQSVLSSFHVYWGRTFVPPISVLDQVTKICNKFLWCGPEMQQKTCHAS 142
           A+HLS AGRLQLI SV+ S   +W   F  P + + ++  +C+ FLW GPE+ +K    S
Sbjct: 22  ARHLSFAGRLQLISSVIHSLTNFWMSAFRLPNACIKEIDGLCSAFLWSGPELNRKKAKVS 81