BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011586
         (487 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83819.1| hypothetical protein VITISV_030951 [Vitis vinifera]   104   8e-21
ref|XP_002274396.2| PREDICTED: 30S ribosomal protein S31, chloro...   103   1e-20
ref|NP_181349.1| 30S ribosomal protein S31 [Arabidopsis thaliana...    99   5e-19
ref|XP_002879729.1| plastid-specific ribosomal protein 4 [Arabid...    97   1e-18
gb|AFK38352.1| unknown [Lotus japonicus]                               94   1e-17

>emb|CAN83819.1| hypothetical protein VITISV_030951 [Vitis vinifera]
          Length = 117

 Score =  104 bits (259), Expect = 8e-21
 Identities = 60/118 (50%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
 Frame = -3

Query: 473 MASLTLGTLPMASPQILNLSSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXI---YCGRGD 303
           MA+L LG  P  +PQ LNLSS+F                           I   YCGRGD
Sbjct: 1   MAALILGA-PAIAPQSLNLSSRFSFSQSETLAVSFDTRFVSLSISATSPPIPSVYCGRGD 59

Query: 302 RKTAKGKRFNHSFGNARPRNKNKGRGPPRVAVPPSPLKKDPFEXXXXXXXXXXDSLFS 129
           +KTAKGKRFNHSFGNARPRNK KGRGPPR  +PPSP KKD FE          +SLF+
Sbjct: 60  KKTAKGKRFNHSFGNARPRNKKKGRGPPRAPIPPSPPKKDRFEDDEVVKIEIDESLFN 117


>ref|XP_002274396.2| PREDICTED: 30S ribosomal protein S31, chloroplastic-like [Vitis
           vinifera] gi|297740225|emb|CBI30407.3| unnamed protein
           product [Vitis vinifera]
          Length = 118

 Score =  103 bits (258), Expect = 1e-20
 Identities = 59/119 (49%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
 Frame = -3

Query: 473 MASLTLGTLPMASPQILNLSSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXI----YCGRG 306
           MA+L LG  P  +PQ LNLSS+F                                YCGRG
Sbjct: 1   MAALILGA-PAIAPQSLNLSSRFSFSQSETLAVSFDTRFVSLSISATSPPPIPSVYCGRG 59

Query: 305 DRKTAKGKRFNHSFGNARPRNKNKGRGPPRVAVPPSPLKKDPFEXXXXXXXXXXDSLFS 129
           D+KTAKGKRFNHSFGNARPRNK KGRGPPR  +PPSP KKD FE          +SLF+
Sbjct: 60  DKKTAKGKRFNHSFGNARPRNKKKGRGPPRAPIPPSPPKKDRFEDDEVVKIEIDESLFN 118


>ref|NP_181349.1| 30S ribosomal protein S31 [Arabidopsis thaliana]
           gi|75275034|sp|O80439.1|RR31_ARATH RecName: Full=30S
           ribosomal protein S31, chloroplastic; AltName:
           Full=Plastid-specific 30S ribosomal protein 4;
           Short=PSRP-4; Flags: Precursor
           gi|7578852|gb|AAF64153.1|AF236826_1 plastid-specific
           ribosomal protein 4 precursor [Arabidopsis thaliana]
           gi|3335362|gb|AAC27163.1| 30S ribosomal protein S31
           [Arabidopsis thaliana] gi|15529182|gb|AAK97685.1|
           At2g38140/F16M14.7 [Arabidopsis thaliana]
           gi|16974357|gb|AAL31104.1| At2g38140/F16M14.7
           [Arabidopsis thaliana] gi|21618289|gb|AAM67339.1| 30S
           ribosomal protein S31 [Arabidopsis thaliana]
           gi|330254400|gb|AEC09494.1| 30S ribosomal protein S31
           [Arabidopsis thaliana]
          Length = 118

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 46/65 (70%), Positives = 51/65 (78%)
 Frame = -3

Query: 320 YCGRGDRKTAKGKRFNHSFGNARPRNKNKGRGPPRVAVPPSPLKKDPFEXXXXXXXXXXD 141
           YCGRGDRKTAKGKRFNHSFGNARPRNK+KGRGP RV VPP+P +KD FE          +
Sbjct: 54  YCGRGDRKTAKGKRFNHSFGNARPRNKSKGRGPERVPVPPAPPRKDKFENDEKIKIDIDE 113

Query: 140 SLFSS 126
           SLFS+
Sbjct: 114 SLFSN 118


>ref|XP_002879729.1| plastid-specific ribosomal protein 4 [Arabidopsis lyrata subsp.
           lyrata] gi|297325568|gb|EFH55988.1| plastid-specific
           ribosomal protein 4 [Arabidopsis lyrata subsp. lyrata]
          Length = 114

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 43/49 (87%), Positives = 45/49 (91%)
 Frame = -3

Query: 320 YCGRGDRKTAKGKRFNHSFGNARPRNKNKGRGPPRVAVPPSPLKKDPFE 174
           YCGRGDRKTAKGKRFNHSFGNARPRNKNKGRGP RV VPP+P +KD FE
Sbjct: 54  YCGRGDRKTAKGKRFNHSFGNARPRNKNKGRGPERVPVPPAPPRKDKFE 102


>gb|AFK38352.1| unknown [Lotus japonicus]
          Length = 121

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 42/64 (65%), Positives = 48/64 (75%)
 Frame = -3

Query: 320 YCGRGDRKTAKGKRFNHSFGNARPRNKNKGRGPPRVAVPPSPLKKDPFEXXXXXXXXXXD 141
           YCGRGDRKT +GKRFNHSFGNARP++K KGRGPPR+  PP+P KKD FE          +
Sbjct: 57  YCGRGDRKTERGKRFNHSFGNARPKDKKKGRGPPRLYAPPAPTKKDKFEDNEVVKIDIDE 116

Query: 140 SLFS 129
           SLFS
Sbjct: 117 SLFS 120