BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011551
         (1217 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containi...   458   e-126
ref|XP_002306730.1| predicted protein [Populus trichocarpa] gi|2...   436   e-120
ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containi...   419   e-115
ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   416   e-114
gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Ja...   387   e-105

>ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein At1g34160-like
            [Vitis vinifera]
          Length = 573

 Score =  458 bits (1179), Expect = e-126
 Identities = 223/287 (77%), Positives = 249/287 (86%)
 Frame = +3

Query: 3    ALELFNEMGRVGVVPDGITYLAALFACNHAGLVSDGLGLFRAMVDSGVRPNVKHFGSVVD 182
            ALELF EMG+  V  D +TYLA L ACNHAGLV +G+ LF  MV  GV  NVKH+GSVVD
Sbjct: 287  ALELFEEMGKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGRGVNRNVKHYGSVVD 346

Query: 183  LLGRAGRLEEAYQMITSMPMVPDAVLWQTLLGASKTFGNVAMAEHASRALVEMGSNSDGD 362
            LLGRAGRL EAY++I SMP+VPD VLWQ+LLGA KT+GNV MAE ASR LVEMGSNS GD
Sbjct: 347  LLGRAGRLGEAYRIINSMPIVPDVVLWQSLLGACKTYGNVEMAEMASRKLVEMGSNSCGD 406

Query: 363  FVLLSNIYAARERWDDVGRVREAMRSRNVKKVPGFSFIEVEGVIHKFINGDQSHPGWREI 542
            FVLLSN+YAARERW+DVGRVREAM+SR+V+KVPGFS+IEVEGVIHKF+NGDQSHP WREI
Sbjct: 407  FVLLSNVYAARERWEDVGRVREAMKSRDVRKVPGFSYIEVEGVIHKFVNGDQSHPDWREI 466

Query: 543  YRKLDEIGFRVKEYGYVPETCYVLHDIGEEEKEVALCHHSEKLAIAFGLISTGAGTSIQV 722
            Y KLDEI FR+K +GYV ET  VLHDIGEE+KE ALCHHSEKLA+AFGLIST  GT I+V
Sbjct: 467  YAKLDEIRFRIKAFGYVAETSLVLHDIGEEDKENALCHHSEKLAVAFGLISTSEGTPIRV 526

Query: 723  IKNLRICGDCHVVFKLISKIYEREIIVRDRSRFHRFKEGSCSCGDYW 863
             KNLRICGDCHVV KLISKIY++EIIVRDR+RFHRFK+GSCSC DYW
Sbjct: 527  NKNLRICGDCHVVIKLISKIYDQEIIVRDRARFHRFKDGSCSCRDYW 573


>ref|XP_002306730.1| predicted protein [Populus trichocarpa] gi|222856179|gb|EEE93726.1|
            predicted protein [Populus trichocarpa]
          Length = 578

 Score =  436 bits (1121), Expect = e-120
 Identities = 214/287 (74%), Positives = 237/287 (82%)
 Frame = +3

Query: 3    ALELFNEMGRVGVVPDGITYLAALFACNHAGLVSDGLGLFRAMVDSGVRPNVKHFGSVVD 182
            ALELF +M + GV PD ++YLA L ACNH GLV +G  LF +M + GV+PNVKH+GSVVD
Sbjct: 292  ALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVD 351

Query: 183  LLGRAGRLEEAYQMITSMPMVPDAVLWQTLLGASKTFGNVAMAEHASRALVEMGSNSDGD 362
            LLGRAGRL EAY ++ SMP VPD VLWQTLLGAS+T  NV +AE  SR LVEMGSN  GD
Sbjct: 352  LLGRAGRLHEAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGD 411

Query: 363  FVLLSNIYAARERWDDVGRVREAMRSRNVKKVPGFSFIEVEGVIHKFINGDQSHPGWREI 542
            FVLLSN+YAARERW DVGRVREAM++R+VKKVPG S+IE  GVIHKF N D+SH  WREI
Sbjct: 412  FVLLSNVYAARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREI 471

Query: 543  YRKLDEIGFRVKEYGYVPETCYVLHDIGEEEKEVALCHHSEKLAIAFGLISTGAGTSIQV 722
            Y KLDEI FRVKEYGYV ET +VLHDIGEE+KE  L HHSEKLA+AFGLIST  GT IQV
Sbjct: 472  YAKLDEIRFRVKEYGYVAETSFVLHDIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQV 531

Query: 723  IKNLRICGDCHVVFKLISKIYEREIIVRDRSRFHRFKEGSCSCGDYW 863
            IKNLRICGDCH V KLISKIY+REIIVRDR RFHRFKEG CSC DYW
Sbjct: 532  IKNLRICGDCHFVIKLISKIYDREIIVRDRVRFHRFKEGFCSCRDYW 578


>ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein At1g34160-like
            [Cucumis sativus]
          Length = 576

 Score =  419 bits (1077), Expect = e-115
 Identities = 202/287 (70%), Positives = 239/287 (83%)
 Frame = +3

Query: 3    ALELFNEMGRVGVVPDGITYLAALFACNHAGLVSDGLGLFRAMVDSGVRPNVKHFGSVVD 182
            AL+LF ++GR G+ PD ++YLA L ACNHAGLV DGL LF +M   G+ PN+KH+GS+VD
Sbjct: 291  ALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVD 350

Query: 183  LLGRAGRLEEAYQMITSMPMVPDAVLWQTLLGASKTFGNVAMAEHASRALVEMGSNSDGD 362
            LLGRAGRL+EAY +++S+P  P+ VLWQTLLGA +T+G+V MAE ASR LVEMG  S GD
Sbjct: 351  LLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGD 409

Query: 363  FVLLSNIYAARERWDDVGRVREAMRSRNVKKVPGFSFIEVEGVIHKFINGDQSHPGWREI 542
            FVLLSN+YAAR+RWDDVGRVR+AMR R+VKK PGFS+IE++G ++KF+NGDQSH   REI
Sbjct: 410  FVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREI 469

Query: 543  YRKLDEIGFRVKEYGYVPETCYVLHDIGEEEKEVALCHHSEKLAIAFGLISTGAGTSIQV 722
            Y KLDEI  R+K YGY  +T  VLHDIG+E+KE ALC+HSEKLA+AFGL  T  GT IQV
Sbjct: 470  YAKLDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQV 529

Query: 723  IKNLRICGDCHVVFKLISKIYEREIIVRDRSRFHRFKEGSCSCGDYW 863
            IKNLRICGDCHVV KLISKIY REIIVRDR+RFHRFKEG CSC DYW
Sbjct: 530  IKNLRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576


>ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  416 bits (1070), Expect = e-114
 Identities = 201/287 (70%), Positives = 238/287 (82%)
 Frame = +3

Query: 3    ALELFNEMGRVGVVPDGITYLAALFACNHAGLVSDGLGLFRAMVDSGVRPNVKHFGSVVD 182
            AL+LF ++GR G+ PD ++YLA L ACNHAGLV DGL LF +M   G+ PN+KH+GS+VD
Sbjct: 291  ALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVD 350

Query: 183  LLGRAGRLEEAYQMITSMPMVPDAVLWQTLLGASKTFGNVAMAEHASRALVEMGSNSDGD 362
            LLGRAGRL+EAY +++S+P  P+ VLWQTLLGA +T+G+V MAE ASR LVEMG  S G 
Sbjct: 351  LLGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGX 409

Query: 363  FVLLSNIYAARERWDDVGRVREAMRSRNVKKVPGFSFIEVEGVIHKFINGDQSHPGWREI 542
            FVLLSN+YAAR+RWDDVGRVR+AMR R+VKK PGFS+IE++G ++KF+NGDQSH   REI
Sbjct: 410  FVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREI 469

Query: 543  YRKLDEIGFRVKEYGYVPETCYVLHDIGEEEKEVALCHHSEKLAIAFGLISTGAGTSIQV 722
            Y KLDEI  R+K YGY  +T  VLHDIG+E+KE ALC+HSEKLA+AFGL  T  GT IQV
Sbjct: 470  YAKLDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQV 529

Query: 723  IKNLRICGDCHVVFKLISKIYEREIIVRDRSRFHRFKEGSCSCGDYW 863
            IKNLRICGDCHVV KLISKIY REIIVRDR+RFHRFKEG CSC DYW
Sbjct: 530  IKNLRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576


>gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 587

 Score =  387 bits (994), Expect = e-105
 Identities = 186/287 (64%), Positives = 228/287 (79%)
 Frame = +3

Query: 3    ALELFNEMGRVGVVPDGITYLAALFACNHAGLVSDGLGLFRAMVDSGVRPNVKHFGSVVD 182
            AL LF+EM    + PDG+TYLA L  CNH+GLV DGL +F +M    V PN+KH+G++VD
Sbjct: 305  ALRLFDEMP-TRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSM---RVAPNMKHYGTIVD 360

Query: 183  LLGRAGRLEEAYQMITSMPMVPDAVLWQTLLGASKTFGNVAMAEHASRALVEMGSNSDGD 362
            LLGRAGRL EAY  + SMP   D VLWQTLLGA+K  G V +AE A+  L E+GSN DGD
Sbjct: 361  LLGRAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGD 420

Query: 363  FVLLSNIYAARERWDDVGRVREAMRSRNVKKVPGFSFIEVEGVIHKFINGDQSHPGWREI 542
            +VLLSN+YA++ RW DVGRVR+ MRS +V+KVPGFS+ E++GV+HKFINGD+ HP W+EI
Sbjct: 421  YVLLSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEI 480

Query: 543  YRKLDEIGFRVKEYGYVPETCYVLHDIGEEEKEVALCHHSEKLAIAFGLISTGAGTSIQV 722
            YR L++I  R+ E GY PET  VLHDIGEEEK+ ALC+HSEKLAIAFGLI+T  G +++V
Sbjct: 481  YRALEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRV 540

Query: 723  IKNLRICGDCHVVFKLISKIYEREIIVRDRSRFHRFKEGSCSCGDYW 863
            IKNLRICGDCHVV KLISK Y R I++RDR+RFHRF++G CSC DYW
Sbjct: 541  IKNLRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 587