BLASTX nr result
ID: Coptis21_contig00011448
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00011448
(1158 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002524216.1| zinc finger protein, putative [Ricinus commu... 186 7e-45
ref|XP_004150639.1| PREDICTED: poly(A) RNA polymerase GLD2-like ... 168 2e-39
ref|XP_002277771.2| PREDICTED: poly(A) RNA polymerase GLD2-like ... 163 7e-38
dbj|BAE99845.1| hypothetical protein [Arabidopsis thaliana] 160 4e-37
ref|NP_181504.2| Nucleotidyltransferase family protein [Arabidop... 160 4e-37
>ref|XP_002524216.1| zinc finger protein, putative [Ricinus communis]
gi|223536493|gb|EEF38140.1| zinc finger protein, putative
[Ricinus communis]
Length = 493
Score = 186 bits (473), Expect = 7e-45
Identities = 115/300 (38%), Positives = 166/300 (55%), Gaps = 8/300 (2%)
Frame = -2
Query: 1157 LVIFHFQTCEPAILPPLQELYAGNIAHDLTGFRVTAERQIQDICLTNIARFRTNKMGNIN 978
LVIFHFQTC PAILPPL+E+Y N+ DLTG R AE +I++ C NIAR+ ++K +N
Sbjct: 187 LVIFHFQTCVPAILPPLKEIYPRNVVDDLTGVRTVAEERIKETCNANIARYMSDKYRAVN 246
Query: 977 RSTLSELFISFFKKFSRINTMASEYAICTYTGQWEPITSKESWVAKSHPLVIGDPFELAE 798
RS+LSELFISFF KFS I+ A++ ICT+TGQW I S W+ K++ L I DPFE E
Sbjct: 247 RSSLSELFISFFAKFSGISLKAADLGICTFTGQWLDIRSTMRWLPKTYALFIEDPFEQPE 306
Query: 797 NAARAVGKKELIMISEAFNET-SCMLLGNQEQSFLVTSLVRPQIRSQFSS----NKGYST 633
NAARAV L+ I+EAF T ++L NQ ++ L+ +LVRP+I + + N Y++
Sbjct: 307 NAARAVSAGNLVKIAEAFQTTYHKLVLANQNRTSLLGTLVRPEILNCIAGTPVRNLSYTS 366
Query: 632 FRNEGFGQFTDVSSTTRP-VRGQYQGMPLDSYSSPVYSQLQQFPSPVHPIENRFQNWRST 456
+ S + P V+ Q+Q M + + +Q Q+ + R QN R
Sbjct: 367 LHYQSTHPQISKSMYSSPQVQHQFQNMRQEKHQKIFTAQRQEKHPHSSNSQYRVQNTRLE 426
Query: 455 MHPSPVVSSQRHLSYSTVRPIQNH--YENRQMESPSLPNVYLPRXXXXXXXXXXXVWRPR 282
HPS ++ Q H S+ ++ H Y Q + ++ + +WRP+
Sbjct: 427 KHPS-YLAKQGHESHPENTRLERHPNYFAMQKQESNVNTSTRKKPAQYYHGQGQQLWRPK 485
>ref|XP_004150639.1| PREDICTED: poly(A) RNA polymerase GLD2-like [Cucumis sativus]
gi|449516431|ref|XP_004165250.1| PREDICTED: poly(A) RNA
polymerase GLD2-like [Cucumis sativus]
Length = 464
Score = 168 bits (426), Expect = 2e-39
Identities = 111/297 (37%), Positives = 150/297 (50%), Gaps = 5/297 (1%)
Frame = -2
Query: 1157 LVIFHFQTCEPAILPPLQELYAGNIAHDLTGFRVTAERQIQDICLTNIARFRTNKMGNIN 978
LVIFHFQTC PAI PPL+++Y GN+ +L G R E +I C TNIARF++ N
Sbjct: 186 LVIFHFQTCSPAIFPPLRDIYPGNVVDNLKGVRAEVENEIARTCATNIARFKSR---TAN 242
Query: 977 RSTLSELFISFFKKFSRINTMASEYAICTYTGQWEPITSKESWVAKSHPLVIGDPFELAE 798
RS+LSELF+SF KFS I++ ASE IC YTGQW I S W+ K++ + + DPFE E
Sbjct: 243 RSSLSELFVSFLAKFSDISSKASELGICPYTGQWLKIESNMRWLPKTYAIFVEDPFEQPE 302
Query: 797 NAARAVGKKELIMISEAFNETSCMLLG-NQEQSFLVTSLVRPQIRSQFSSNKGYSTFRNE 621
N ARA+ ++L+ ISEAF T L Q +S ++ L RPQI ++ G ++
Sbjct: 303 NTARAINARQLMRISEAFRMTHLRLTSVYQNRSSILNDLARPQISQLIINSSGSASAPAF 362
Query: 620 GFGQFTDVSSTTRPVRGQYQGMPLDSYSSPVYSQLQQFPSPVHPIENRFQN--WRSTMHP 447
+T P+R Q V+ P P I+++FQN R M
Sbjct: 363 NVENYT-------PIRPQ------------VHQARVMQPRPW--IQHQFQNNIPRFNMGN 401
Query: 446 SPVVSSQR-HLSYSTVRPIQNHYENRQMESPSLPNVY-LPRXXXXXXXXXXXVWRPR 282
P ++SQ H S P+ H + S PNV + WRPR
Sbjct: 402 FPAINSQAPHAGTSQSHPLVQHKTPKTKRIVSSPNVLNVGEPSKTYSGQGQQKWRPR 458
>ref|XP_002277771.2| PREDICTED: poly(A) RNA polymerase GLD2-like [Vitis vinifera]
gi|296086183|emb|CBI31624.3| unnamed protein product
[Vitis vinifera]
Length = 453
Score = 163 bits (413), Expect = 7e-38
Identities = 89/205 (43%), Positives = 121/205 (59%), Gaps = 6/205 (2%)
Frame = -2
Query: 1157 LVIFHFQTCEPAILPPLQELYAGNIAHDLTGFRVTAERQIQDICLTNIARFRTNKMGNIN 978
LV+FH QTC PAILPPL+E+Y GN+A DL G R E QI++ NI RF+ ++ N
Sbjct: 187 LVVFHLQTCRPAILPPLKEIYPGNVADDLIGVRAVVEGQIEETSAANINRFKRDRSRAPN 246
Query: 977 RSTLSELFISFFKKFSRINTMASEYAICTYTGQWEPITSKESWVAKSHPLVIGDPFELAE 798
RS+LSELFISF KF I + ASE IC YTGQW I S W+ +++ L + DPFE E
Sbjct: 247 RSSLSELFISFLAKFVDITSRASEQGICPYTGQWVDIDSNMRWMPRTYELFVEDPFEQPE 306
Query: 797 NAARAVGKKELIMISEAFNETSCMLL-GNQEQSFLVTSLVRPQI-----RSQFSSNKGYS 636
N AR V ++L ISEAF T L NQ+Q L+ +LVRPQI R+ ++ Y
Sbjct: 307 NTARGVRSRQLQRISEAFQTTHQRLTSANQDQHSLIDTLVRPQIAQFIRRAPSRNSSAYG 366
Query: 635 TFRNEGFGQFTDVSSTTRPVRGQYQ 561
+ + +V+++ + +Q
Sbjct: 367 RNNSRTYPSVPNVANSPLQFQNDFQ 391
>dbj|BAE99845.1| hypothetical protein [Arabidopsis thaliana]
Length = 511
Score = 160 bits (406), Expect = 4e-37
Identities = 109/325 (33%), Positives = 156/325 (48%), Gaps = 30/325 (9%)
Frame = -2
Query: 1157 LVIFHFQTCEPAILPPLQELYAGNIAHDLTGFRVTAERQIQDICLTNIARFRTNKMGNIN 978
LVIFHFQTC PAILPPL+ +Y + DLTG R TAE I + NIARF++ + ++N
Sbjct: 187 LVIFHFQTCVPAILPPLRVIYPKSAVDDLTGVRKTAEESIAQVTAANIARFKSERAKSVN 246
Query: 977 RSTLSELFISFFKKFSRINTMASEYAICTYTGQWEPITSKESWVAKSHPLVIGDPFELAE 798
RS+LSEL +SFF KFS IN A E+ +C +TG+WE I+S +W+ K++ L + DPFE
Sbjct: 247 RSSLSELLVSFFAKFSDINVKAQEFGVCPFTGRWETISSNTTWLPKTYSLFVEDPFEQPV 306
Query: 797 NAARAVGKKELIMISEAFNETSCMLLGNQEQSFLVTSLVRPQIR-SQFSSNKGYSTFRNE 621
NAAR+V ++ L I++ F TS L+ ++ ++ L I+ S + + S
Sbjct: 307 NAARSVSRRNLDRIAQVFQITSRRLVSECNRNSIIGILTGQHIQESLYRTISLPSQHHAN 366
Query: 620 GFGQFTDVSSTTRPVRGQYQGMPLDSYSSP--------VYSQLQQFPSPVHPIE------ 483
G ++ RP Q Q SY++P S+ QQ + +P
Sbjct: 367 GMHNVRNLHGQARPQNQQMQQNWSQSYNTPNPPHWPPLTQSRPQQNWTQNNPRNLQGQPP 426
Query: 482 NRFQNW-----RSTMHPSPVVSSQRHLSYSTVRPIQN---------HYENRQMESPSLPN 345
+ Q W T SP S R L ++ QN H P+ N
Sbjct: 427 VQGQTWPVITQTQTQQKSPYKSGNRPLKNTSAGSSQNQGHIGKPSGHMNGVNSARPAYTN 486
Query: 344 -VYLPRXXXXXXXXXXXVWRPRHSE 273
V R +WRPRH +
Sbjct: 487 GVNSARPPSKIPSQGGQIWRPRHEQ 511
>ref|NP_181504.2| Nucleotidyltransferase family protein [Arabidopsis thaliana]
gi|53850481|gb|AAU95417.1| At2g39740 [Arabidopsis
thaliana] gi|55733735|gb|AAV59264.1| At2g39740
[Arabidopsis thaliana] gi|330254623|gb|AEC09717.1|
Nucleotidyltransferase family protein [Arabidopsis
thaliana]
Length = 511
Score = 160 bits (406), Expect = 4e-37
Identities = 109/325 (33%), Positives = 156/325 (48%), Gaps = 30/325 (9%)
Frame = -2
Query: 1157 LVIFHFQTCEPAILPPLQELYAGNIAHDLTGFRVTAERQIQDICLTNIARFRTNKMGNIN 978
LVIFHFQTC PAILPPL+ +Y + DLTG R TAE I + NIARF++ + ++N
Sbjct: 187 LVIFHFQTCVPAILPPLRVIYPKSAVDDLTGVRKTAEESIAQVTAANIARFKSERAKSVN 246
Query: 977 RSTLSELFISFFKKFSRINTMASEYAICTYTGQWEPITSKESWVAKSHPLVIGDPFELAE 798
RS+LSEL +SFF KFS IN A E+ +C +TG+WE I+S +W+ K++ L + DPFE
Sbjct: 247 RSSLSELLVSFFAKFSDINVKAQEFGVCPFTGRWETISSNTTWLPKTYSLFVEDPFEQPV 306
Query: 797 NAARAVGKKELIMISEAFNETSCMLLGNQEQSFLVTSLVRPQIR-SQFSSNKGYSTFRNE 621
NAAR+V ++ L I++ F TS L+ ++ ++ L I+ S + + S
Sbjct: 307 NAARSVSRRNLDRIAQVFQITSRRLVSECNRNSIIGILTGQHIQESLYRTISLPSQHHAN 366
Query: 620 GFGQFTDVSSTTRPVRGQYQGMPLDSYSSP--------VYSQLQQFPSPVHPIE------ 483
G ++ RP Q Q SY++P S+ QQ + +P
Sbjct: 367 GMHNVRNLHGQARPQNQQMQQNWSQSYNTPNPPHWPPLTQSRPQQNWTQNNPRNLQGQPP 426
Query: 482 NRFQNW-----RSTMHPSPVVSSQRHLSYSTVRPIQN---------HYENRQMESPSLPN 345
+ Q W T SP S R L ++ QN H P+ N
Sbjct: 427 VQGQTWPVITQTQTQQKSPYKSGNRPLKNTSAGSSQNQGHIGKPSGHMNGVNSARPAYTN 486
Query: 344 -VYLPRXXXXXXXXXXXVWRPRHSE 273
V R +WRPRH +
Sbjct: 487 GVNSARPPSKIPSQGGQIWRPRHEQ 511