BLASTX nr result

ID: Coptis21_contig00011448 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011448
         (1158 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524216.1| zinc finger protein, putative [Ricinus commu...   186   7e-45
ref|XP_004150639.1| PREDICTED: poly(A) RNA polymerase GLD2-like ...   168   2e-39
ref|XP_002277771.2| PREDICTED: poly(A) RNA polymerase GLD2-like ...   163   7e-38
dbj|BAE99845.1| hypothetical protein [Arabidopsis thaliana]           160   4e-37
ref|NP_181504.2| Nucleotidyltransferase family protein [Arabidop...   160   4e-37

>ref|XP_002524216.1| zinc finger protein, putative [Ricinus communis]
            gi|223536493|gb|EEF38140.1| zinc finger protein, putative
            [Ricinus communis]
          Length = 493

 Score =  186 bits (473), Expect = 7e-45
 Identities = 115/300 (38%), Positives = 166/300 (55%), Gaps = 8/300 (2%)
 Frame = -2

Query: 1157 LVIFHFQTCEPAILPPLQELYAGNIAHDLTGFRVTAERQIQDICLTNIARFRTNKMGNIN 978
            LVIFHFQTC PAILPPL+E+Y  N+  DLTG R  AE +I++ C  NIAR+ ++K   +N
Sbjct: 187  LVIFHFQTCVPAILPPLKEIYPRNVVDDLTGVRTVAEERIKETCNANIARYMSDKYRAVN 246

Query: 977  RSTLSELFISFFKKFSRINTMASEYAICTYTGQWEPITSKESWVAKSHPLVIGDPFELAE 798
            RS+LSELFISFF KFS I+  A++  ICT+TGQW  I S   W+ K++ L I DPFE  E
Sbjct: 247  RSSLSELFISFFAKFSGISLKAADLGICTFTGQWLDIRSTMRWLPKTYALFIEDPFEQPE 306

Query: 797  NAARAVGKKELIMISEAFNET-SCMLLGNQEQSFLVTSLVRPQIRSQFSS----NKGYST 633
            NAARAV    L+ I+EAF  T   ++L NQ ++ L+ +LVRP+I +  +     N  Y++
Sbjct: 307  NAARAVSAGNLVKIAEAFQTTYHKLVLANQNRTSLLGTLVRPEILNCIAGTPVRNLSYTS 366

Query: 632  FRNEGFGQFTDVSSTTRP-VRGQYQGMPLDSYSSPVYSQLQQFPSPVHPIENRFQNWRST 456
               +        S  + P V+ Q+Q M  + +     +Q Q+        + R QN R  
Sbjct: 367  LHYQSTHPQISKSMYSSPQVQHQFQNMRQEKHQKIFTAQRQEKHPHSSNSQYRVQNTRLE 426

Query: 455  MHPSPVVSSQRHLSYSTVRPIQNH--YENRQMESPSLPNVYLPRXXXXXXXXXXXVWRPR 282
             HPS  ++ Q H S+     ++ H  Y   Q +  ++      +           +WRP+
Sbjct: 427  KHPS-YLAKQGHESHPENTRLERHPNYFAMQKQESNVNTSTRKKPAQYYHGQGQQLWRPK 485


>ref|XP_004150639.1| PREDICTED: poly(A) RNA polymerase GLD2-like [Cucumis sativus]
            gi|449516431|ref|XP_004165250.1| PREDICTED: poly(A) RNA
            polymerase GLD2-like [Cucumis sativus]
          Length = 464

 Score =  168 bits (426), Expect = 2e-39
 Identities = 111/297 (37%), Positives = 150/297 (50%), Gaps = 5/297 (1%)
 Frame = -2

Query: 1157 LVIFHFQTCEPAILPPLQELYAGNIAHDLTGFRVTAERQIQDICLTNIARFRTNKMGNIN 978
            LVIFHFQTC PAI PPL+++Y GN+  +L G R   E +I   C TNIARF++      N
Sbjct: 186  LVIFHFQTCSPAIFPPLRDIYPGNVVDNLKGVRAEVENEIARTCATNIARFKSR---TAN 242

Query: 977  RSTLSELFISFFKKFSRINTMASEYAICTYTGQWEPITSKESWVAKSHPLVIGDPFELAE 798
            RS+LSELF+SF  KFS I++ ASE  IC YTGQW  I S   W+ K++ + + DPFE  E
Sbjct: 243  RSSLSELFVSFLAKFSDISSKASELGICPYTGQWLKIESNMRWLPKTYAIFVEDPFEQPE 302

Query: 797  NAARAVGKKELIMISEAFNETSCMLLG-NQEQSFLVTSLVRPQIRSQFSSNKGYSTFRNE 621
            N ARA+  ++L+ ISEAF  T   L    Q +S ++  L RPQI     ++ G ++    
Sbjct: 303  NTARAINARQLMRISEAFRMTHLRLTSVYQNRSSILNDLARPQISQLIINSSGSASAPAF 362

Query: 620  GFGQFTDVSSTTRPVRGQYQGMPLDSYSSPVYSQLQQFPSPVHPIENRFQN--WRSTMHP 447
                +T       P+R Q            V+      P P   I+++FQN   R  M  
Sbjct: 363  NVENYT-------PIRPQ------------VHQARVMQPRPW--IQHQFQNNIPRFNMGN 401

Query: 446  SPVVSSQR-HLSYSTVRPIQNHYENRQMESPSLPNVY-LPRXXXXXXXXXXXVWRPR 282
             P ++SQ  H   S   P+  H   +     S PNV  +              WRPR
Sbjct: 402  FPAINSQAPHAGTSQSHPLVQHKTPKTKRIVSSPNVLNVGEPSKTYSGQGQQKWRPR 458


>ref|XP_002277771.2| PREDICTED: poly(A) RNA polymerase GLD2-like [Vitis vinifera]
            gi|296086183|emb|CBI31624.3| unnamed protein product
            [Vitis vinifera]
          Length = 453

 Score =  163 bits (413), Expect = 7e-38
 Identities = 89/205 (43%), Positives = 121/205 (59%), Gaps = 6/205 (2%)
 Frame = -2

Query: 1157 LVIFHFQTCEPAILPPLQELYAGNIAHDLTGFRVTAERQIQDICLTNIARFRTNKMGNIN 978
            LV+FH QTC PAILPPL+E+Y GN+A DL G R   E QI++    NI RF+ ++    N
Sbjct: 187  LVVFHLQTCRPAILPPLKEIYPGNVADDLIGVRAVVEGQIEETSAANINRFKRDRSRAPN 246

Query: 977  RSTLSELFISFFKKFSRINTMASEYAICTYTGQWEPITSKESWVAKSHPLVIGDPFELAE 798
            RS+LSELFISF  KF  I + ASE  IC YTGQW  I S   W+ +++ L + DPFE  E
Sbjct: 247  RSSLSELFISFLAKFVDITSRASEQGICPYTGQWVDIDSNMRWMPRTYELFVEDPFEQPE 306

Query: 797  NAARAVGKKELIMISEAFNETSCMLL-GNQEQSFLVTSLVRPQI-----RSQFSSNKGYS 636
            N AR V  ++L  ISEAF  T   L   NQ+Q  L+ +LVRPQI     R+   ++  Y 
Sbjct: 307  NTARGVRSRQLQRISEAFQTTHQRLTSANQDQHSLIDTLVRPQIAQFIRRAPSRNSSAYG 366

Query: 635  TFRNEGFGQFTDVSSTTRPVRGQYQ 561
               +  +    +V+++    +  +Q
Sbjct: 367  RNNSRTYPSVPNVANSPLQFQNDFQ 391


>dbj|BAE99845.1| hypothetical protein [Arabidopsis thaliana]
          Length = 511

 Score =  160 bits (406), Expect = 4e-37
 Identities = 109/325 (33%), Positives = 156/325 (48%), Gaps = 30/325 (9%)
 Frame = -2

Query: 1157 LVIFHFQTCEPAILPPLQELYAGNIAHDLTGFRVTAERQIQDICLTNIARFRTNKMGNIN 978
            LVIFHFQTC PAILPPL+ +Y  +   DLTG R TAE  I  +   NIARF++ +  ++N
Sbjct: 187  LVIFHFQTCVPAILPPLRVIYPKSAVDDLTGVRKTAEESIAQVTAANIARFKSERAKSVN 246

Query: 977  RSTLSELFISFFKKFSRINTMASEYAICTYTGQWEPITSKESWVAKSHPLVIGDPFELAE 798
            RS+LSEL +SFF KFS IN  A E+ +C +TG+WE I+S  +W+ K++ L + DPFE   
Sbjct: 247  RSSLSELLVSFFAKFSDINVKAQEFGVCPFTGRWETISSNTTWLPKTYSLFVEDPFEQPV 306

Query: 797  NAARAVGKKELIMISEAFNETSCMLLGNQEQSFLVTSLVRPQIR-SQFSSNKGYSTFRNE 621
            NAAR+V ++ L  I++ F  TS  L+    ++ ++  L    I+ S + +    S     
Sbjct: 307  NAARSVSRRNLDRIAQVFQITSRRLVSECNRNSIIGILTGQHIQESLYRTISLPSQHHAN 366

Query: 620  GFGQFTDVSSTTRPVRGQYQGMPLDSYSSP--------VYSQLQQFPSPVHPIE------ 483
            G     ++    RP   Q Q     SY++P          S+ QQ  +  +P        
Sbjct: 367  GMHNVRNLHGQARPQNQQMQQNWSQSYNTPNPPHWPPLTQSRPQQNWTQNNPRNLQGQPP 426

Query: 482  NRFQNW-----RSTMHPSPVVSSQRHLSYSTVRPIQN---------HYENRQMESPSLPN 345
             + Q W       T   SP  S  R L  ++    QN         H        P+  N
Sbjct: 427  VQGQTWPVITQTQTQQKSPYKSGNRPLKNTSAGSSQNQGHIGKPSGHMNGVNSARPAYTN 486

Query: 344  -VYLPRXXXXXXXXXXXVWRPRHSE 273
             V   R           +WRPRH +
Sbjct: 487  GVNSARPPSKIPSQGGQIWRPRHEQ 511


>ref|NP_181504.2| Nucleotidyltransferase family protein [Arabidopsis thaliana]
            gi|53850481|gb|AAU95417.1| At2g39740 [Arabidopsis
            thaliana] gi|55733735|gb|AAV59264.1| At2g39740
            [Arabidopsis thaliana] gi|330254623|gb|AEC09717.1|
            Nucleotidyltransferase family protein [Arabidopsis
            thaliana]
          Length = 511

 Score =  160 bits (406), Expect = 4e-37
 Identities = 109/325 (33%), Positives = 156/325 (48%), Gaps = 30/325 (9%)
 Frame = -2

Query: 1157 LVIFHFQTCEPAILPPLQELYAGNIAHDLTGFRVTAERQIQDICLTNIARFRTNKMGNIN 978
            LVIFHFQTC PAILPPL+ +Y  +   DLTG R TAE  I  +   NIARF++ +  ++N
Sbjct: 187  LVIFHFQTCVPAILPPLRVIYPKSAVDDLTGVRKTAEESIAQVTAANIARFKSERAKSVN 246

Query: 977  RSTLSELFISFFKKFSRINTMASEYAICTYTGQWEPITSKESWVAKSHPLVIGDPFELAE 798
            RS+LSEL +SFF KFS IN  A E+ +C +TG+WE I+S  +W+ K++ L + DPFE   
Sbjct: 247  RSSLSELLVSFFAKFSDINVKAQEFGVCPFTGRWETISSNTTWLPKTYSLFVEDPFEQPV 306

Query: 797  NAARAVGKKELIMISEAFNETSCMLLGNQEQSFLVTSLVRPQIR-SQFSSNKGYSTFRNE 621
            NAAR+V ++ L  I++ F  TS  L+    ++ ++  L    I+ S + +    S     
Sbjct: 307  NAARSVSRRNLDRIAQVFQITSRRLVSECNRNSIIGILTGQHIQESLYRTISLPSQHHAN 366

Query: 620  GFGQFTDVSSTTRPVRGQYQGMPLDSYSSP--------VYSQLQQFPSPVHPIE------ 483
            G     ++    RP   Q Q     SY++P          S+ QQ  +  +P        
Sbjct: 367  GMHNVRNLHGQARPQNQQMQQNWSQSYNTPNPPHWPPLTQSRPQQNWTQNNPRNLQGQPP 426

Query: 482  NRFQNW-----RSTMHPSPVVSSQRHLSYSTVRPIQN---------HYENRQMESPSLPN 345
             + Q W       T   SP  S  R L  ++    QN         H        P+  N
Sbjct: 427  VQGQTWPVITQTQTQQKSPYKSGNRPLKNTSAGSSQNQGHIGKPSGHMNGVNSARPAYTN 486

Query: 344  -VYLPRXXXXXXXXXXXVWRPRHSE 273
             V   R           +WRPRH +
Sbjct: 487  GVNSARPPSKIPSQGGQIWRPRHEQ 511


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