BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011351
         (2341 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containi...   573   e-161
emb|CBI33534.3| unnamed protein product [Vitis vinifera]              571   e-160
ref|XP_002301697.1| predicted protein [Populus trichocarpa] gi|2...   565   e-158
ref|XP_002532468.1| pentatricopeptide repeat-containing protein,...   546   e-152
ref|XP_003552963.1| PREDICTED: pentatricopeptide repeat-containi...   528   e-147

>ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
            mitochondrial-like [Vitis vinifera]
          Length = 502

 Score =  573 bits (1476), Expect = e-161
 Identities = 285/483 (59%), Positives = 358/483 (74%)
 Frame = +2

Query: 35   RTKKRPTSQPDPSPNKKPHEEKRPTFPSYLQTPNLTPKIKLLCEIIANTPTPNVETTLED 214
            R K+  +S  D + + +    KRP+FP+YL+TPNL+PK++LLCEIIANTP+  VE  L D
Sbjct: 23   RNKRHSSSTTDSATHHQT--PKRPSFPTYLETPNLSPKVRLLCEIIANTPSSTVEEVLHD 80

Query: 215  TGIRVTTDDVEQVLKLSYSHPGPAVKFFRWSGKQLNDNHSPYGWXXXXXXXXXXXXFEAM 394
            T IRV+ +DVE  LKLSY  PG AVKFFRWSG QLNDNHSPY W            F+AM
Sbjct: 81   TAIRVSPEDVEDSLKLSYGFPGSAVKFFRWSGHQLNDNHSPYSWNLVVDMLGKNFLFDAM 140

Query: 395  WDAIKSMKKEGLLSLATFASVFSSYVVGEHVEEAMMTFEVMDQYGCARDVVALNSLLSAI 574
            WDA+KSMKK+GLLSLATFAS+FSSYV+ + V EA+MTF+VM+QYGC RD+VALNSLLSAI
Sbjct: 141  WDAVKSMKKQGLLSLATFASIFSSYVIADRVREAIMTFDVMEQYGCPRDIVALNSLLSAI 200

Query: 575  CREGKTVKAWEFLHIAKEKIRPDGDTYAILLEGWESEGDVGNAHKTFGEMVIQFGWDPVN 754
            CR+G+TV+A EFL   +  IRPD DTYAILLEGWESEG+ G A +TF EMV+  GWDP N
Sbjct: 201  CRDGRTVQAAEFLRNVRGLIRPDADTYAILLEGWESEGNCGAARQTFDEMVMDIGWDPGN 260

Query: 755  VPAYDAFLNTLLKSHHDGVRETMKFFDVMKSNRCFPGMKFFRSALNEFLKTSSLRDASNV 934
            V AYD+FLN LL    DG RE MKFF++M+  +C PGM+F+R  L E +KTS  + A  +
Sbjct: 261  VSAYDSFLNALLHG-PDGRREAMKFFEIMRDRQCSPGMRFYRIGLQECVKTSDSKGAQLL 319

Query: 935  WETMVRLNGCKPDTEMYNSMMSLQCYLNQADVAYRLLDEMVFYGAFPDSKTYSTLLKFML 1114
            W+TM+  N C+PDTEMYNSM++L C  +   +A  +LDEMV  GAFPDS+TY+ L +F++
Sbjct: 320  WQTMLSRNICRPDTEMYNSMIALHCSCDNIVMARGMLDEMVCNGAFPDSETYNVLFRFLI 379

Query: 1115 KLRKVREVSVIFHEMVKNEFIPTHENCSAALTLYVDIGDPDMAIKVWKCMLENEMMPGWE 1294
            + RK+ E   IF EMV+NE +P   NC+AA+ +Y+D+GD   AIKVWK ++EN    G E
Sbjct: 380  RRRKLEEAFSIFSEMVQNECVPDLTNCNAAVRIYLDLGDVYKAIKVWKYIIENH-DSGLE 438

Query: 1295 IAGNKLIVGLRDLNRLPEARKYAEDMIERGIKLHSKTLSKLKQSLTQLGKAYAYDELLRK 1474
              GN L+ GLRD +R+PEA KYA+DMI RGIKL S TLSKLK +L ++GK   YDELLRK
Sbjct: 439  ETGNLLVTGLRDHDRIPEAVKYAKDMIVRGIKLTSSTLSKLKHALVEVGKGPVYDELLRK 498

Query: 1475 WKS 1483
            WK+
Sbjct: 499  WKT 501


>emb|CBI33534.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  571 bits (1471), Expect = e-160
 Identities = 281/462 (60%), Positives = 349/462 (75%)
 Frame = +2

Query: 98   KRPTFPSYLQTPNLTPKIKLLCEIIANTPTPNVETTLEDTGIRVTTDDVEQVLKLSYSHP 277
            KRP+FP+YL+TPNL+PK++LLCEIIANTP+  VE  L DT IRV+ +DVE  LKLSY  P
Sbjct: 46   KRPSFPTYLETPNLSPKVRLLCEIIANTPSSTVEEVLHDTAIRVSPEDVEDSLKLSYGFP 105

Query: 278  GPAVKFFRWSGKQLNDNHSPYGWXXXXXXXXXXXXFEAMWDAIKSMKKEGLLSLATFASV 457
            G AVKFFRWSG QLNDNHSPY W            F+AMWDA+KSMKK+GLLSLATFAS+
Sbjct: 106  GSAVKFFRWSGHQLNDNHSPYSWNLVVDMLGKNFLFDAMWDAVKSMKKQGLLSLATFASI 165

Query: 458  FSSYVVGEHVEEAMMTFEVMDQYGCARDVVALNSLLSAICREGKTVKAWEFLHIAKEKIR 637
            FSSYV+ + V EA+MTF+VM+QYGC RD+VALNSLLSAICR+G+TV+A EFL   +  IR
Sbjct: 166  FSSYVIADRVREAIMTFDVMEQYGCPRDIVALNSLLSAICRDGRTVQAAEFLRNVRGLIR 225

Query: 638  PDGDTYAILLEGWESEGDVGNAHKTFGEMVIQFGWDPVNVPAYDAFLNTLLKSHHDGVRE 817
            PD DTYAILLEGWESEG+ G A +TF EMV+  GWDP NV AYD+FLN LL    DG RE
Sbjct: 226  PDADTYAILLEGWESEGNCGAARQTFDEMVMDIGWDPGNVSAYDSFLNALLHG-PDGRRE 284

Query: 818  TMKFFDVMKSNRCFPGMKFFRSALNEFLKTSSLRDASNVWETMVRLNGCKPDTEMYNSMM 997
             MKFF++M+  +C PGM+F+R  L E +KTS  + A  +W+TM+  N C+PDTEMYNSM+
Sbjct: 285  AMKFFEIMRDRQCSPGMRFYRIGLQECVKTSDSKGAQLLWQTMLSRNICRPDTEMYNSMI 344

Query: 998  SLQCYLNQADVAYRLLDEMVFYGAFPDSKTYSTLLKFMLKLRKVREVSVIFHEMVKNEFI 1177
            +L C  +   +A  +LDEMV  GAFPDS+TY+ L +F+++ RK+ E   IF EMV+NE +
Sbjct: 345  ALHCSCDNIVMARGMLDEMVCNGAFPDSETYNVLFRFLIRRRKLEEAFSIFSEMVQNECV 404

Query: 1178 PTHENCSAALTLYVDIGDPDMAIKVWKCMLENEMMPGWEIAGNKLIVGLRDLNRLPEARK 1357
            P   NC+AA+ +Y+D+GD   AIKVWK ++EN    G E  GN L+ GLRD +R+PEA K
Sbjct: 405  PDLTNCNAAVRIYLDLGDVYKAIKVWKYIIENH-DSGLEETGNLLVTGLRDHDRIPEAVK 463

Query: 1358 YAEDMIERGIKLHSKTLSKLKQSLTQLGKAYAYDELLRKWKS 1483
            YA+DMI RGIKL S TLSKLK +L ++GK   YDELLRKWK+
Sbjct: 464  YAKDMIVRGIKLTSSTLSKLKHALVEVGKGPVYDELLRKWKT 505


>ref|XP_002301697.1| predicted protein [Populus trichocarpa] gi|222843423|gb|EEE80970.1|
            predicted protein [Populus trichocarpa]
          Length = 499

 Score =  565 bits (1456), Expect = e-158
 Identities = 280/463 (60%), Positives = 345/463 (74%)
 Frame = +2

Query: 98   KRPTFPSYLQTPNLTPKIKLLCEIIANTPTPNVETTLEDTGIRVTTDDVEQVLKLSYSHP 277
            K+P+F SYL+TPNL P IKLLCEIIANTP+ NVE+ L+ T IRV   DVEQVLKLSYS P
Sbjct: 35   KKPSFQSYLETPNLPPTIKLLCEIIANTPSHNVESVLDATVIRVKQTDVEQVLKLSYSSP 94

Query: 278  GPAVKFFRWSGKQLNDNHSPYGWXXXXXXXXXXXXFEAMWDAIKSMKKEGLLSLATFASV 457
            G AVKFFRW+G QLND HSPY W            F+AMW AIKSMK+E L+SLATFASV
Sbjct: 95   GSAVKFFRWAGLQLNDKHSPYSWNLVVDLLGKNSMFDAMWGAIKSMKRENLVSLATFASV 154

Query: 458  FSSYVVGEHVEEAMMTFEVMDQYGCARDVVALNSLLSAICREGKTVKAWEFLHIAKEKIR 637
            FSSYV+ + V+EA+MTFEVMDQYGC R+VVALNSLLSAICREG+T  A EFLH+AK +I 
Sbjct: 155  FSSYVIVDRVKEAIMTFEVMDQYGCTRNVVALNSLLSAICREGRTFDAVEFLHVAKNRIL 214

Query: 638  PDGDTYAILLEGWESEGDVGNAHKTFGEMVIQFGWDPVNVPAYDAFLNTLLKSHHDGVRE 817
            PD D+YAILLEGWE E +V +A  TF +MV   GWDP NVPAYD FL+TLL   +DG+RE
Sbjct: 215  PDADSYAILLEGWEKEMNVASARTTFADMVSMVGWDPRNVPAYDTFLSTLLMG-YDGLRE 273

Query: 818  TMKFFDVMKSNRCFPGMKFFRSALNEFLKTSSLRDASNVWETMVRLNGCKPDTEMYNSMM 997
             MK FD MK   CFPG+KFFR AL E LK + +R A  +WET+V   G +PD ++YN M+
Sbjct: 274  AMKHFDTMKDRGCFPGVKFFRLALEECLKCNDVRAAMLIWETLVARVGFRPDIQLYNLMI 333

Query: 998  SLQCYLNQADVAYRLLDEMVFYGAFPDSKTYSTLLKFMLKLRKVREVSVIFHEMVKNEFI 1177
             + CY NQ D+A + LDEM++ G FPDS+TY+ L ++++K +K++E S + +EM+KNEF 
Sbjct: 334  GIHCYDNQTDIANKFLDEMIYNGVFPDSQTYNVLFQYLIKYKKLKEASFVLNEMIKNEFF 393

Query: 1178 PTHENCSAALTLYVDIGDPDMAIKVWKCMLENEMMPGWEIAGNKLIVGLRDLNRLPEARK 1357
            P   NC+AA+  Y+D  +P MAIKVWKCM+EN      E AGN L+V LR  + +PEA K
Sbjct: 394  PNKTNCNAAIKAYMDSKEPYMAIKVWKCMMENYGESDLEEAGNMLVVELRYHHMVPEAVK 453

Query: 1358 YAEDMIERGIKLHSKTLSKLKQSLTQLGKAYAYDELLRKWKSN 1486
            YAE MIE+GIKL S +LSKLKQ L +  K   Y+ELLRKWK++
Sbjct: 454  YAEVMIEKGIKLTSSSLSKLKQMLNEEKKPILYEELLRKWKAH 496


>ref|XP_002532468.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223527826|gb|EEF29924.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 510

 Score =  546 bits (1406), Expect = e-152
 Identities = 271/465 (58%), Positives = 338/465 (72%)
 Frame = +2

Query: 89   HEEKRPTFPSYLQTPNLTPKIKLLCEIIANTPTPNVETTLEDTGIRVTTDDVEQVLKLSY 268
            +  K PTFPSYL+TPNL+PKIKLLCEIIA  P+  VET L++TG+ V+  DVEQV+KLSY
Sbjct: 47   YPNKHPTFPSYLETPNLSPKIKLLCEIIAKIPSSTVETILDETGLYVSQYDVEQVIKLSY 106

Query: 269  SHPGPAVKFFRWSGKQLNDNHSPYGWXXXXXXXXXXXXFEAMWDAIKSMKKEGLLSLATF 448
            S PGPAVKFFRW+G +L DNHSPY W            F+AMWDAIKSMK + L+SLATF
Sbjct: 107  SFPGPAVKFFRWAGFRLQDNHSPYSWNLVVDLLGKNCLFDAMWDAIKSMKSKELVSLATF 166

Query: 449  ASVFSSYVVGEHVEEAMMTFEVMDQYGCARDVVALNSLLSAICREGKTVKAWEFLHIAKE 628
            ASVF SYV    V++A+ TFEVM+QYG  RDVVALNSLLSAICR+GKTV A +FL +AK 
Sbjct: 167  ASVFGSYVTAGRVKDAIFTFEVMNQYGVVRDVVALNSLLSAICRDGKTVDAVDFLFVAKN 226

Query: 629  KIRPDGDTYAILLEGWESEGDVGNAHKTFGEMVIQFGWDPVNVPAYDAFLNTLLKSHHDG 808
             I+PD DT+AILLEGWE E ++ N+ +TF EMV + GWDP N PAYD FL TLL     G
Sbjct: 227  SIKPDADTFAILLEGWEKELNLVNSRQTFDEMVREIGWDPANTPAYDTFLCTLLMG-RIG 285

Query: 809  VRETMKFFDVMKSNRCFPGMKFFRSALNEFLKTSSLRDASNVWETMVRLNGCKPDTEMYN 988
              E ++F ++MK  RC PGM+FFR+A+ E LK + +R A  +WE M+  NG +PD EMYN
Sbjct: 286  FNEVIEFLEIMKEKRCCPGMRFFRAAIEECLKVNDVRVAGLIWEVMMETNGFRPDIEMYN 345

Query: 989  SMMSLQCYLNQADVAYRLLDEMVFYGAFPDSKTYSTLLKFMLKLRKVREVSVIFHEMVKN 1168
             M+SL CY N  D+A R LDEMV+ G FPD +TY+ L +F++K RK++E SV+F+EM+KN
Sbjct: 346  LMISLYCYTNNTDIALRFLDEMVYNGVFPDRQTYNLLFQFLIKSRKLKEASVLFNEMIKN 405

Query: 1169 EFIPTHENCSAALTLYVDIGDPDMAIKVWKCMLENEMMPGWEIAGNKLIVGLRDLNRLPE 1348
            E +P   NCSAA+ +++   DP MAIKVWKCM+EN  +   E  GN LIV L DL+  PE
Sbjct: 406  ECLPNQANCSAAVRVFMHSKDPYMAIKVWKCMIENYEL-DLEETGNLLIVELCDLHMDPE 464

Query: 1349 ARKYAEDMIERGIKLHSKTLSKLKQSLTQLGKAYAYDELLRKWKS 1483
            A KYAE MI +GIK+ S T+ KLK  L Q  K + Y+ LLRKWK+
Sbjct: 465  AVKYAESMIGKGIKVTSPTMEKLKLCLKQARKEFVYERLLRKWKA 509


>ref|XP_003552963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
            mitochondrial-like [Glycine max]
          Length = 485

 Score =  528 bits (1360), Expect = e-147
 Identities = 271/485 (55%), Positives = 339/485 (69%), Gaps = 1/485 (0%)
 Frame = +2

Query: 35   RTKKRPTSQPDPSP-NKKPHEEKRPTFPSYLQTPNLTPKIKLLCEIIANTPTPNVETTLE 211
            R K+   S   PSP +KKP      TFPS+   PNL   IK LC +IA T   +VE +L+
Sbjct: 8    RRKRAHPSSSSPSPISKKPQ-----TFPSFQDIPNLPSNIKSLCHLIATTSAASVEHSLQ 62

Query: 212  DTGIRVTTDDVEQVLKLSYSHPGPAVKFFRWSGKQLNDNHSPYGWXXXXXXXXXXXXFEA 391
               I VT  DVE+VLKLSY  PG AVKFFRWSG+ LNDNH+PY W            F+A
Sbjct: 63   SAAISVTPHDVEEVLKLSYGFPGQAVKFFRWSGRHLNDNHTPYSWNLVVDILGKNRFFDA 122

Query: 392  MWDAIKSMKKEGLLSLATFASVFSSYVVGEHVEEAMMTFEVMDQYGCARDVVALNSLLSA 571
            MWDAIKSM KEGLLSLATFASVFSSYV  + + EA+M FE+MD Y   RDVVALNSLLSA
Sbjct: 123  MWDAIKSMNKEGLLSLATFASVFSSYVAADRIREAIMAFEIMDNYCVVRDVVALNSLLSA 182

Query: 572  ICREGKTVKAWEFLHIAKEKIRPDGDTYAILLEGWESEGDVGNAHKTFGEMVIQFGWDPV 751
            IC  G+T+ A ++L +AK+ +RPD DTYAIL+EGWE E  V  A +TF EMVI+ GWDP+
Sbjct: 183  ICSNGRTLDACDYLQVAKKLVRPDTDTYAILMEGWEGENGVVGAKETFAEMVIEIGWDPL 242

Query: 752  NVPAYDAFLNTLLKSHHDGVRETMKFFDVMKSNRCFPGMKFFRSALNEFLKTSSLRDASN 931
            NVPAYD+FL TL++   DG+ E +KF D M+  RCFPG++F ++AL+E +K+  +R A  
Sbjct: 243  NVPAYDSFLCTLVRG-PDGLLEAIKFVDSMRDRRCFPGVRFLKAALDECVKSHDVRTAEF 301

Query: 932  VWETMVRLNGCKPDTEMYNSMMSLQCYLNQADVAYRLLDEMVFYGAFPDSKTYSTLLKFM 1111
             WE +V     +P  EMYN M+ L CY    D A R+LDEMV+ GAFPD +TY+ L KF+
Sbjct: 302  FWEVLVVGKVVQPTAEMYNLMIGLCCYRGDTDAARRMLDEMVYQGAFPDVETYNLLFKFL 361

Query: 1112 LKLRKVREVSVIFHEMVKNEFIPTHENCSAALTLYVDIGDPDMAIKVWKCMLENEMMPGW 1291
            +K RK+RE SV+F EMVKNE +P  +NC AA+  YVD G+P MAIKVWK ++EN      
Sbjct: 362  IKGRKLREASVVFAEMVKNECVPEQDNCDAAVKAYVDCGEPVMAIKVWKYLVEN-YKKDL 420

Query: 1292 EIAGNKLIVGLRDLNRLPEARKYAEDMIERGIKLHSKTLSKLKQSLTQLGKAYAYDELLR 1471
            E   N L+VGLRDLNRLPEA KYAEDMI+R I+L S T+SKL+QSL +  + + Y++LLR
Sbjct: 421  ERTANFLVVGLRDLNRLPEAVKYAEDMIDREIRLSSNTMSKLRQSLIKERREFVYEDLLR 480

Query: 1472 KWKSN 1486
            K KS+
Sbjct: 481  KSKSH 485