BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011300
         (259 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB58571.1| predicted to encode 4983 amino acids with a predi...    76   3e-12
sp|P59272.2|RS27A_DAUCA RecName: Full=Ubiquitin-40S ribosomal pr...    75   7e-12
ref|XP_001418619.1| Ribosomal protein S27a, component of cytosol...    74   1e-11
emb|CCO14928.1| predicted protein [Bathycoccus prasinos]               74   1e-11
gb|ADY49357.1| Polyubiquitin-A, partial [Ascaris suum]                 74   1e-11

>gb|AAB58571.1| predicted to encode 4983 amino acids with a predicted molecular mass
            of 558 kDa; ILLC-BVDV ORF [Bovine viral diarrhea virus 1]
          Length = 4983

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 42/72 (58%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
 Frame = +3

Query: 3    EVESSDTVYEVKAKIEAERGIPPSFQKLIFVDKQLEGGRKVLEDDRTLAEYNIRNESTVH 182
            EVE SDT+  VKAKI+ + GIPP  Q+LIF  KQLE   K LED RTL++YNI+ EST+H
Sbjct: 2610 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE---KQLEDGRTLSDYNIQKESTLH 2666

Query: 183  MFL---GNGPKV 209
            + L   G GP V
Sbjct: 2667 LVLRLRGGGPAV 2678


>sp|P59272.2|RS27A_DAUCA RecName: Full=Ubiquitin-40S ribosomal protein S27a; Contains:
           RecName: Full=Ubiquitin; Contains: RecName: Full=40S
           ribosomal protein S27a; Flags: Precursor
           gi|3319208|gb|AAC26159.1| ubiquitin-carboxyl extension
           [Daucus carota]
          Length = 143

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 44/84 (52%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
 Frame = +3

Query: 3   EVESSDTVYEVKAKIEAERGIPPSFQKLIFVDKQLEGGRKVLEDDRTLAEYNIRNESTVH 182
           EVESSDT+  VKAKI+ + GIPP  Q+LIF  KQ       LED RTLA+YNI+ EST+H
Sbjct: 16  EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADYNIQKESTLH 68

Query: 183 MFL---GNGPKVEYETETIEQKKK 245
           + L   G G K + +T T  +K K
Sbjct: 69  LVLRLRGGGKKRKKKTYTKPKKTK 92


>ref|XP_001418619.1| Ribosomal protein S27a, component of cytosolic 80S ribosome and 40S
           small subunit [Ostreococcus lucimarinus CCE9901]
           gi|144578849|gb|ABO96912.1| Ribosomal protein S27a,
           component of cytosolic 80S ribosome and 40S small
           subunit [Ostreococcus lucimarinus CCE9901]
          Length = 150

 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 44/84 (52%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
 Frame = +3

Query: 3   EVESSDTVYEVKAKIEAERGIPPSFQKLIFVDKQLEGGRKVLEDDRTLAEYNIRNESTVH 182
           EVESSDT+  VKAKI+ + GIPP  Q+LIF  KQ       LED RTLA+YNI+ EST+H
Sbjct: 16  EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADYNIQKESTLH 68

Query: 183 MFL---GNGPKVEYETETIEQKKK 245
           + L   G G K + +T T  +K K
Sbjct: 69  LVLRLRGGGKKRKKKTYTKPKKVK 92


>emb|CCO14928.1| predicted protein [Bathycoccus prasinos]
          Length = 169

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 44/84 (52%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
 Frame = +3

Query: 3   EVESSDTVYEVKAKIEAERGIPPSFQKLIFVDKQLEGGRKVLEDDRTLAEYNIRNESTVH 182
           EVESSDT+  VKAKI+ + GIPP  Q+LIF  KQ       LED RTLA+YNI+ EST+H
Sbjct: 32  EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADYNIQKESTLH 84

Query: 183 MFL---GNGPKVEYETETIEQKKK 245
           + L   G G K + +T T  +K K
Sbjct: 85  LVLRLRGGGKKRKKKTYTKPKKIK 108


>gb|ADY49357.1| Polyubiquitin-A, partial [Ascaris suum]
          Length = 177

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
 Frame = +3

Query: 3   EVESSDTVYEVKAKIEAERGIPPSFQKLIFVDKQLEGGRKVLEDDRTLAEYNIRNESTVH 182
           EVE+SDT+  VKAKI+ + GIPP  Q+LIF  KQ       LED RTL++YNI+ EST+H
Sbjct: 16  EVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLSDYNIQKESTLH 68

Query: 183 MFL---GNGPKVEYETETIEQKKK 245
           + L   G G K + +T T  +K K
Sbjct: 69  LVLRLRGGGKKRKKKTYTTPKKNK 92