BLASTX nr result

ID: Coptis21_contig00011275 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00011275
         (316 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI39451.3| unnamed protein product [Vitis vinifera]              137   9e-31
ref|XP_002320451.1| predicted protein [Populus trichocarpa] gi|2...   136   2e-30
gb|ABK94723.1| unknown [Populus trichocarpa]                          132   4e-29
ref|XP_004152079.1| PREDICTED: protein CMSS1-like [Cucumis sativ...   125   3e-27
ref|NP_850384.1| uncharacterized protein [Arabidopsis thaliana] ...   125   5e-27

>emb|CBI39451.3| unnamed protein product [Vitis vinifera]
          Length = 273

 Score =  137 bits (345), Expect = 9e-31
 Identities = 69/105 (65%), Positives = 79/105 (75%)
 Frame = +2

Query: 2   QDLDQDAGALSTHMKDAFGTSWXXXXXXXXXXXXTVDPGNPAILVISTSAIRSLELLRGL 181
           Q LDQ+   L   +K AFG SW             +DPGNPA+L+IS SA+RSLE LRGL
Sbjct: 92  QGLDQEVSTLGKQVKAAFGPSWKEVLCEGQLMEGKIDPGNPAVLIISASALRSLEFLRGL 151

Query: 182 RPLTVECSAAKLFAKHMKVEDQVSMLKSRVNIASGTPSRIKKLID 316
           RPLT EC AAKLF+KHMKV+DQVS+LK+RVNIASGTPSRIKKLID
Sbjct: 152 RPLTRECPAAKLFSKHMKVDDQVSILKNRVNIASGTPSRIKKLID 196


>ref|XP_002320451.1| predicted protein [Populus trichocarpa] gi|222861224|gb|EEE98766.1|
           predicted protein [Populus trichocarpa]
          Length = 279

 Score =  136 bits (343), Expect = 2e-30
 Identities = 68/105 (64%), Positives = 81/105 (77%)
 Frame = +2

Query: 2   QDLDQDAGALSTHMKDAFGTSWXXXXXXXXXXXXTVDPGNPAILVISTSAIRSLELLRGL 181
           Q+  QD  AL +HMK AFG SW             +DPG+PA+L+ISTSA+RSLELLRG+
Sbjct: 96  QESGQDVMALGSHMKAAFGPSWKQVLCEGKLVEGIIDPGSPAVLIISTSALRSLELLRGV 155

Query: 182 RPLTVECSAAKLFAKHMKVEDQVSMLKSRVNIASGTPSRIKKLID 316
           R LT EC AAKLF+KHMKVE+QV+MLK+RVN ASGTPSR+KKLID
Sbjct: 156 RSLTKECHAAKLFSKHMKVEEQVAMLKNRVNFASGTPSRVKKLID 200


>gb|ABK94723.1| unknown [Populus trichocarpa]
          Length = 191

 Score =  132 bits (331), Expect = 4e-29
 Identities = 65/97 (67%), Positives = 77/97 (79%)
 Frame = +2

Query: 26  ALSTHMKDAFGTSWXXXXXXXXXXXXTVDPGNPAILVISTSAIRSLELLRGLRPLTVECS 205
           AL +HMK AFG SW             +DPG+PA+L+ISTSA+RSLELLRG+R LT EC 
Sbjct: 2   ALGSHMKAAFGPSWKQVLCEGKLVEGIIDPGSPAVLIISTSALRSLELLRGVRSLTKECH 61

Query: 206 AAKLFAKHMKVEDQVSMLKSRVNIASGTPSRIKKLID 316
           AAKLF+KHMKVE+QV+MLK+RVN ASGTPSR+KKLID
Sbjct: 62  AAKLFSKHMKVEEQVAMLKNRVNFASGTPSRVKKLID 98


>ref|XP_004152079.1| PREDICTED: protein CMSS1-like [Cucumis sativus]
           gi|449520825|ref|XP_004167433.1| PREDICTED: protein
           CMSS1-like [Cucumis sativus]
          Length = 271

 Score =  125 bits (315), Expect = 3e-27
 Identities = 61/101 (60%), Positives = 77/101 (76%)
 Frame = +2

Query: 14  QDAGALSTHMKDAFGTSWXXXXXXXXXXXXTVDPGNPAILVISTSAIRSLELLRGLRPLT 193
           QD  +L  H+K+AFG+SW              +PG+PA+L+ISTSA+RS+ELL+G R +T
Sbjct: 100 QDDKSLVKHVKEAFGSSWKEILCKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSIT 159

Query: 194 VECSAAKLFAKHMKVEDQVSMLKSRVNIASGTPSRIKKLID 316
            EC A KLF+KHMKVE+QV +LK+RVNIASGTPSRIKKLID
Sbjct: 160 QECHAVKLFSKHMKVEEQVQLLKNRVNIASGTPSRIKKLID 200


>ref|NP_850384.1| uncharacterized protein [Arabidopsis thaliana]
           gi|26452917|dbj|BAC43536.1| unknown protein [Arabidopsis
           thaliana] gi|114050605|gb|ABI49452.1| At2g43110
           [Arabidopsis thaliana] gi|330255116|gb|AEC10210.1|
           uncharacterized protein [Arabidopsis thaliana]
          Length = 288

 Score =  125 bits (313), Expect = 5e-27
 Identities = 62/105 (59%), Positives = 77/105 (73%)
 Frame = +2

Query: 2   QDLDQDAGALSTHMKDAFGTSWXXXXXXXXXXXXTVDPGNPAILVISTSAIRSLELLRGL 181
           Q LDQD   L  H+K + G+SW             V+PGNP++LVIS+SA+RSLELLRGL
Sbjct: 113 QGLDQDVSNLGEHIKLSCGSSWRETLCEGESLERKVEPGNPSVLVISSSALRSLELLRGL 172

Query: 182 RPLTVECSAAKLFAKHMKVEDQVSMLKSRVNIASGTPSRIKKLID 316
             LT +C A KLF+KH+KVE+QVS+LK RVNI SGTP+RIKKL+D
Sbjct: 173 HSLTKQCPAVKLFSKHLKVEEQVSLLKKRVNIGSGTPNRIKKLVD 217


Top